Wall clock time and date at job start Mon Mar 30 2020 04:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99743 * 2 1 4 4 H 1.48501 * 109.47262 * 270.00013 * 3 2 1 5 5 H 1.48497 * 109.47499 * 30.00263 * 3 2 1 6 6 H 1.48507 * 109.47234 * 150.00149 * 3 2 1 7 7 C 1.37874 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00108 * 179.14416 * 7 2 1 9 9 C 1.50708 * 119.99753 * 359.42221 * 7 2 1 10 10 C 1.52991 * 115.54985 * 35.39632 * 9 7 2 11 11 N 1.46897 * 109.47610 * 54.55559 * 10 9 7 12 12 C 1.46901 * 111.00264 * 64.71498 * 11 10 9 13 13 C 1.52992 * 109.47304 * 190.00527 * 12 11 10 14 14 N 1.46905 * 109.47159 * 180.02562 * 13 12 11 15 15 C 1.46899 * 111.00378 * 188.67382 * 11 10 9 16 16 C 1.52998 * 109.47404 * 77.86293 * 15 11 10 17 17 F 1.39903 * 109.46879 * 56.39849 * 16 15 11 18 18 F 1.39898 * 109.46998 * 176.40011 * 16 15 11 19 19 F 1.39900 * 109.47257 * 296.40472 * 16 15 11 20 20 C 1.53005 * 117.49507 * 249.72030 * 9 7 2 21 21 C 1.53002 * 117.49609 * 181.06372 * 9 7 2 22 22 H 0.96996 * 120.00161 * 4.79346 * 1 2 3 23 23 H 1.09000 * 109.46711 * 174.55310 * 10 9 7 24 24 H 1.08997 * 109.46993 * 294.54971 * 10 9 7 25 25 H 1.09003 * 109.47160 * 310.00692 * 12 11 10 26 26 H 1.09004 * 109.46771 * 70.00105 * 12 11 10 27 27 H 1.09007 * 109.46951 * 299.99702 * 13 12 11 28 28 H 1.08994 * 109.47612 * 60.00055 * 13 12 11 29 29 H 1.00903 * 110.99715 * 179.97438 * 14 13 12 30 30 H 1.00899 * 110.99222 * 303.94875 * 14 13 12 31 31 H 1.08995 * 109.47308 * 197.86950 * 15 11 10 32 32 H 1.09010 * 109.46746 * 317.86573 * 15 11 10 33 33 H 1.09002 * 117.49938 * 0.02562 * 20 9 7 34 34 H 1.09000 * 117.49170 * 145.02146 * 20 9 7 35 35 H 1.08991 * 117.50225 * 214.97893 * 21 9 7 36 36 H 1.09008 * 117.49719 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 -0.0134 9 6 1.2511 -2.4991 0.0143 10 6 -0.0602 -2.5123 -0.7738 11 7 0.1939 -2.0808 -2.1547 12 6 1.0630 -3.0369 -2.8536 13 6 1.5071 -2.4397 -4.1903 14 7 2.3758 -3.3962 -4.8895 15 6 -1.0654 -1.8830 -2.8848 16 6 -1.6881 -0.5469 -2.4751 17 9 -0.7714 0.4847 -2.7050 18 9 -2.8441 -0.3203 -3.2297 19 9 -2.0179 -0.5832 -1.1160 20 6 1.3164 -3.3391 1.2915 21 6 2.0732 -3.7892 0.0394 22 1 -0.4850 0.8371 -0.0702 23 1 -0.4711 -3.5219 -0.7784 24 1 -0.7722 -1.8325 -0.3058 25 1 1.9394 -3.2468 -2.2404 26 1 0.5151 -3.9620 -3.0330 27 1 0.6307 -2.2299 -4.8036 28 1 2.0550 -1.5147 -4.0110 29 1 2.6823 -3.0249 -5.7762 30 1 3.1630 -3.6567 -4.3146 31 1 -0.8672 -1.8782 -3.9565 32 1 -1.7546 -2.6933 -2.6464 33 1 1.9040 -2.9475 2.1219 34 1 0.4251 -3.9013 1.5701 35 1 1.6797 -4.6475 -0.5051 36 1 3.1591 -3.6940 0.0455 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713337873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:44 Heat of formation + Delta-G solvation = -121.940407 kcal Electronic energy + Delta-G solvation = -22634.680008 eV Core-core repulsion = 18932.717422 eV Total energy + Delta-G solvation = -3701.962585 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.62275 -48.20730 -47.99638 -39.57036 -37.19439 -34.94052 -33.91861 -30.32143 -28.82029 -27.32211 -25.17731 -23.84375 -22.82057 -21.74078 -20.76122 -19.10147 -19.01271 -18.25670 -17.96029 -16.81213 -16.50623 -16.19819 -15.81074 -15.41442 -15.08862 -15.07416 -14.97636 -14.62083 -14.41358 -14.22034 -14.17441 -13.86791 -13.72092 -13.15083 -13.06980 -12.81673 -12.77017 -12.41098 -12.26347 -12.15066 -11.76370 -11.63794 -11.15976 -10.71504 -10.36355 -9.88847 -9.60122 -8.93973 -7.74117 -5.88599 1.45133 1.50036 1.53733 2.12865 2.55920 2.86283 3.27773 3.31820 3.44013 3.76439 3.79151 3.95606 4.16529 4.35671 4.36603 4.43138 4.48867 4.62484 4.76519 4.80729 4.94595 4.99384 5.10745 5.12751 5.22591 5.47833 5.60224 5.77023 6.12158 6.20829 6.40766 6.42774 6.62407 6.69583 7.06163 7.72600 9.16277 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.011948 C = 0.008962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.043711 B = 2343.022167 C = 3123.473570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.061 3.939 3 Si 0.923 3.077 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.491 4.491 8 H 0.035 0.965 9 C 0.043 3.957 10 C 0.094 3.906 11 N -0.506 5.506 12 C 0.067 3.933 13 C 0.071 3.929 14 N -0.848 5.848 15 C 0.014 3.986 16 C 0.456 3.544 17 F -0.189 7.189 18 F -0.200 7.200 19 F -0.167 7.167 20 C -0.210 4.210 21 C -0.195 4.195 22 H 0.252 0.748 23 H -0.006 1.006 24 H 0.120 0.880 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.020 0.980 29 H 0.351 0.649 30 H 0.345 0.655 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -4.746 -8.134 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.142 4.142 3 Si 0.752 3.248 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.033 4.033 11 N -0.230 5.230 12 C -0.061 4.061 13 C -0.060 4.060 14 N -0.379 5.379 15 C -0.116 4.116 16 C 0.401 3.599 17 F -0.171 7.171 18 F -0.182 7.182 19 F -0.148 7.148 20 C -0.249 4.249 21 C -0.233 4.233 22 H 0.062 0.938 23 H 0.011 0.989 24 H 0.138 0.862 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.142 0.858 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.472 -4.599 -8.038 9.585 hybrid contribution 0.809 1.288 0.399 1.572 sum -1.663 -3.311 -7.639 8.490 Atomic orbital electron populations 1.69955 1.05471 1.25664 1.48797 1.25123 0.95379 0.99613 0.94112 0.86127 0.78846 0.82436 0.77365 1.21232 1.21846 1.20578 1.20303 0.91059 0.90013 1.51458 0.94683 1.18975 0.93734 0.89145 0.93871 1.22088 0.98781 0.95421 0.87016 1.61318 1.11395 1.48287 1.01957 1.22009 0.97420 0.92193 0.94476 1.21655 0.97130 0.93155 0.94107 1.58691 1.25283 1.45308 1.08614 1.23167 0.94561 0.91941 1.01947 1.20691 0.75313 0.88671 0.75190 1.93116 1.67092 1.62636 1.94235 1.93104 1.52438 1.95848 1.76818 1.93170 1.92355 1.96513 1.32771 1.22998 1.01620 1.07298 0.92995 1.22915 0.97629 1.00202 1.02511 0.93771 0.98856 0.86220 0.90493 0.94797 0.90930 0.96208 0.83545 0.84289 0.85825 0.90131 0.91422 0.90750 0.89927 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.01 7.28 21.45 0.16 -44.86 16 2 C 0.06 3.18 5.30 84.65 0.45 3.63 16 3 Si 0.92 43.75 29.54 68.60 2.03 45.78 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 7 C -0.49 -25.59 8.75 25.60 0.22 -25.37 16 8 H 0.03 1.89 7.81 -2.91 -0.02 1.87 16 9 C 0.04 2.00 1.44 -52.93 -0.08 1.93 16 10 C 0.09 4.06 3.70 86.30 0.32 4.38 16 11 N -0.51 -19.63 3.81 -896.26 -3.41 -23.05 16 12 C 0.07 2.24 4.99 86.30 0.43 2.67 16 13 C 0.07 2.06 6.76 86.30 0.58 2.64 16 14 N -0.85 -20.05 9.62 -186.72 -1.80 -21.85 16 15 C 0.01 0.47 4.97 86.30 0.43 0.90 16 16 C 0.46 17.25 3.06 71.98 0.22 17.47 16 17 F -0.19 -8.14 16.51 44.97 0.74 -7.40 16 18 F -0.20 -6.76 17.32 44.97 0.78 -5.98 16 19 F -0.17 -7.20 12.02 44.97 0.54 -6.65 16 20 C -0.21 -9.06 9.96 30.62 0.30 -8.76 16 21 C -0.20 -7.82 8.08 30.62 0.25 -7.57 16 22 H 0.25 13.28 7.88 -92.71 -0.73 12.55 16 23 H -0.01 -0.26 8.08 -2.39 -0.02 -0.28 16 24 H 0.12 5.80 3.66 -2.39 -0.01 5.79 16 25 H 0.08 2.85 5.48 -2.39 -0.01 2.84 16 26 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 27 H 0.07 1.95 6.24 -2.38 -0.01 1.93 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.35 6.73 9.08 -89.69 -0.81 5.92 16 30 H 0.34 7.84 8.99 -89.69 -0.81 7.04 16 31 H 0.12 3.43 5.85 -2.39 -0.01 3.41 16 32 H 0.08 2.39 7.97 -2.38 -0.02 2.37 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.08 2.98 8.08 -2.39 -0.02 2.96 16 36 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 Total: -1.00 -55.50 294.24 1.70 -53.80 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.46 Total: 18.29 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 3.13 Total: -8.08 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -5.05 Total: -89.75 kcal Atomic # 9 Polarization: -22.10 SS G_CDS: 2.06 Total: -20.04 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -55.50 1.70 -53.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713337873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.143 kcal (2) G-P(sol) polarization free energy of solvation -55.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds