Wall clock time and date at job start Mon Mar 30 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31008 * 1 3 3 Si 1.86804 * 120.00295 * 2 1 4 4 H 1.48504 * 109.47123 * 270.00119 * 3 2 1 5 5 H 1.48498 * 109.46872 * 30.00144 * 3 2 1 6 6 H 1.48499 * 109.46968 * 150.00430 * 3 2 1 7 7 C 1.39584 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00337 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00353 * 180.02562 * 9 7 2 11 11 O 1.21499 * 119.99774 * 0.02562 * 10 9 7 12 12 C 1.48827 * 120.00288 * 180.02562 * 10 9 7 13 13 O 1.21446 * 119.99720 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00393 * 180.02562 * 12 10 9 15 15 C 1.46501 * 120.00094 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47057 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47118 * 179.97438 * 16 15 14 18 18 H 1.08996 * 110.53849 * 56.15669 * 17 16 15 19 19 C 1.54889 * 110.48592 * 293.54400 * 17 16 15 20 20 C 1.54891 * 102.74891 * 203.37985 * 19 17 16 21 21 C 1.54266 * 104.31343 * 37.87666 * 20 19 17 22 22 H 1.09000 * 117.41374 * 196.48160 * 21 20 19 23 23 C 1.55782 * 118.11191 * 39.94747 * 21 20 19 24 24 C 1.53003 * 59.86518 * 266.78956 * 23 21 20 25 25 H 1.08996 * 119.29698 * 248.36500 * 24 23 21 26 26 H 0.97002 * 120.00104 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99981 * 0.02562 * 9 7 2 28 28 H 0.97004 * 119.99561 * 359.97438 * 14 12 10 29 29 H 1.08994 * 109.47063 * 59.99610 * 15 14 12 30 30 H 1.08998 * 109.46732 * 299.99403 * 15 14 12 31 31 H 1.09001 * 109.46994 * 59.99442 * 16 15 14 32 32 H 1.09002 * 109.46915 * 299.99835 * 16 15 14 33 33 H 1.08998 * 110.75807 * 85.06488 * 19 17 16 34 34 H 1.08998 * 110.91370 * 321.76573 * 19 17 16 35 35 H 1.09002 * 110.48740 * 156.62163 * 20 19 17 36 36 H 1.08998 * 110.48604 * 279.13048 * 20 19 17 37 37 H 1.08995 * 117.11858 * 159.22272 * 23 21 20 38 38 H 1.09005 * 118.10909 * 13.90670 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7001 6 1 3.5418 1.4400 0.6999 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2090 -0.0001 9 7 1.3274 -2.3877 -0.0005 10 6 2.0012 -3.5549 -0.0005 11 8 3.2161 -3.5550 -0.0001 12 6 1.2570 -4.8438 -0.0011 13 8 0.0426 -4.8437 -0.0011 14 7 1.9308 -6.0111 -0.0006 15 6 1.1982 -7.2798 -0.0017 16 6 2.1924 -8.4427 -0.0002 17 6 1.4274 -9.7677 -0.0007 18 1 0.7449 -9.8148 -0.8493 19 6 0.6528 -9.9469 1.3285 20 6 0.4764 -11.4832 1.4169 21 6 1.8022 -12.0514 0.8700 22 1 1.8155 -13.1013 0.5772 23 6 3.1272 -11.3346 1.2669 24 6 2.4087 -10.9576 -0.0303 25 1 2.8700 -11.2041 -0.9865 26 1 -0.4850 0.8400 0.0004 27 1 0.3573 -2.3877 -0.0005 28 1 2.9009 -6.0111 -0.0002 29 1 0.5726 -7.3372 -0.8924 30 1 0.5707 -7.3376 0.8876 31 1 2.8178 -8.3850 0.8907 32 1 2.8204 -8.3850 -0.8892 33 1 -0.3156 -9.4490 1.2815 34 1 1.2357 -9.5759 2.1716 35 1 0.3274 -11.7912 2.4518 36 1 -0.3611 -11.8072 0.7991 37 1 4.0485 -11.9108 1.1820 38 1 3.0968 -10.6155 2.0855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717100631.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:30 Heat of formation + Delta-G solvation = -64.013678 kcal Electronic energy + Delta-G solvation = -19445.908463 eV Core-core repulsion = 16288.314509 eV Total energy + Delta-G solvation = -3157.593954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04871 -39.34861 -37.22744 -35.24828 -34.17295 -32.24432 -31.36443 -30.51721 -27.15299 -25.61995 -23.94916 -23.10496 -21.74516 -19.88512 -19.65797 -18.91965 -18.28998 -17.02659 -16.65431 -15.82735 -15.37863 -14.95444 -14.76083 -14.32604 -14.25283 -13.87431 -13.57560 -13.08940 -12.80506 -12.75812 -12.39299 -12.10963 -11.76590 -11.55421 -11.40212 -11.19067 -11.15699 -10.96040 -10.71369 -10.53117 -10.41934 -10.32911 -10.22087 -9.75574 -9.71073 -8.70612 -8.25582 -8.21523 -6.66100 -3.98454 2.47267 3.15674 3.16469 3.21956 3.36225 3.50930 4.07226 4.16604 4.30149 4.37978 4.58080 4.83004 4.86356 4.96424 5.05137 5.14035 5.19729 5.24041 5.32001 5.39833 5.48911 5.52674 5.62216 5.72895 5.75846 5.90505 5.92906 5.99122 6.00872 6.06811 6.15711 6.23774 6.81681 7.31914 7.70958 7.90212 8.34457 8.64858 8.97405 9.33171 9.86395 10.48880 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.055777 B = 0.002997 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.880610 B = 9340.803843 C = 9656.669478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.500 5.500 10 C 0.394 3.606 11 O -0.598 6.598 12 C 0.512 3.488 13 O -0.548 6.548 14 N -0.716 5.716 15 C 0.120 3.880 16 C -0.122 4.122 17 C -0.059 4.059 18 H 0.084 0.916 19 C -0.129 4.129 20 C -0.096 4.096 21 C -0.172 4.172 22 H 0.108 0.892 23 C -0.154 4.154 24 C -0.157 4.157 25 H 0.107 0.893 26 H 0.280 0.720 27 H 0.405 0.595 28 H 0.409 0.591 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -19.939 1.285 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.134 5.134 10 C 0.179 3.821 11 O -0.487 6.487 12 C 0.296 3.704 13 O -0.425 6.425 14 N -0.370 5.370 15 C -0.004 4.004 16 C -0.160 4.160 17 C -0.078 4.078 18 H 0.102 0.898 19 C -0.167 4.167 20 C -0.133 4.133 21 C -0.190 4.190 22 H 0.126 0.874 23 C -0.191 4.191 24 C -0.176 4.176 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.240 0.760 28 H 0.245 0.755 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.610 -19.788 1.282 19.895 hybrid contribution 0.232 0.681 -0.098 0.726 sum 1.843 -19.107 1.184 19.232 Atomic orbital electron populations 1.69483 1.06524 1.29340 1.45399 1.25587 0.95628 1.00472 0.95935 0.85722 0.79371 0.79680 0.78782 1.19897 1.20519 1.18900 1.19882 0.93971 0.81899 1.47907 0.86989 1.41568 1.10496 1.04239 1.57094 1.18981 0.87821 0.84264 0.91084 1.90575 1.12910 1.86663 1.58548 1.20682 0.87499 0.85956 0.76219 1.90686 1.14084 1.88166 1.49551 1.45683 1.11120 1.04761 1.75405 1.21347 0.94714 0.82163 1.02206 1.21757 0.98131 0.92921 1.03162 1.21511 0.95479 0.92335 0.98461 0.89793 1.22651 1.00799 0.95817 0.97418 1.21907 0.95467 0.95074 1.00882 1.23620 0.93090 0.96984 1.05350 0.87389 1.23310 0.94697 1.02583 0.98465 1.23169 1.01998 0.96911 0.95476 0.87485 0.90926 0.75996 0.75504 0.91756 0.91598 0.91045 0.91012 0.90801 0.91033 0.91599 0.91003 0.88545 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.47 13.03 55.53 0.72 -22.75 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 3 Si 0.94 20.18 29.56 -169.99 -5.02 15.16 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.31 -8.50 9.67 -15.15 -0.15 -8.65 16 8 H 0.11 3.17 7.15 -52.48 -0.38 2.80 16 9 N -0.50 -13.54 5.25 -11.59 -0.06 -13.60 16 10 C 0.39 10.07 7.82 -11.88 -0.09 9.97 16 11 O -0.60 -16.18 16.03 5.37 0.09 -16.09 16 12 C 0.51 11.32 7.87 -11.88 -0.09 11.22 16 13 O -0.55 -13.06 16.47 5.41 0.09 -12.97 16 14 N -0.72 -12.35 5.55 -60.93 -0.34 -12.68 16 15 C 0.12 1.63 5.52 -4.04 -0.02 1.60 16 16 C -0.12 -1.24 4.87 -26.73 -0.13 -1.37 16 17 C -0.06 -0.53 2.83 -88.96 -0.25 -0.78 16 18 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 19 C -0.13 -1.14 5.03 -24.74 -0.12 -1.26 16 20 C -0.10 -0.75 6.77 -25.07 -0.17 -0.92 16 21 C -0.17 -1.35 7.19 -87.90 -0.63 -1.98 16 22 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 23 C -0.15 -1.21 9.95 -25.25 -0.25 -1.46 16 24 C -0.16 -1.30 6.33 -89.38 -0.57 -1.87 16 25 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 27 H 0.40 11.04 7.35 -40.82 -0.30 10.74 16 28 H 0.41 6.64 7.93 -40.82 -0.32 6.31 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.92 7.38 -51.93 -0.38 0.54 16 31 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.66 8.01 -51.93 -0.42 0.25 16 34 H 0.07 0.65 7.31 -51.93 -0.38 0.27 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.78 7.27 -51.93 -0.38 0.40 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -30.70 320.48 -7.76 -38.46 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.49 Total: 14.44 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -2.58 Total: 5.21 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.32 Total: -49.03 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: 0.18 Total: -29.07 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.70 -7.76 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717100631.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.556 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds