Wall clock time and date at job start Mon Mar 30 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31008 * 1 3 3 Si 1.86804 * 120.00295 * 2 1 4 4 H 1.48504 * 109.47123 * 270.00119 * 3 2 1 5 5 H 1.48498 * 109.46872 * 30.00144 * 3 2 1 6 6 H 1.48499 * 109.46968 * 150.00430 * 3 2 1 7 7 C 1.39584 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00337 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00353 * 180.02562 * 9 7 2 11 11 O 1.21499 * 119.99774 * 0.02562 * 10 9 7 12 12 C 1.48827 * 120.00288 * 180.02562 * 10 9 7 13 13 O 1.21446 * 119.99720 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00393 * 180.02562 * 12 10 9 15 15 C 1.46501 * 120.00094 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47057 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47118 * 179.97438 * 16 15 14 18 18 H 1.08996 * 110.53849 * 56.15669 * 17 16 15 19 19 C 1.54889 * 110.48592 * 293.54400 * 17 16 15 20 20 C 1.54891 * 102.74891 * 203.37985 * 19 17 16 21 21 C 1.54266 * 104.31343 * 37.87666 * 20 19 17 22 22 H 1.09000 * 117.41374 * 196.48160 * 21 20 19 23 23 C 1.55782 * 118.11191 * 39.94747 * 21 20 19 24 24 C 1.53003 * 59.86518 * 266.78956 * 23 21 20 25 25 H 1.08996 * 119.29698 * 248.36500 * 24 23 21 26 26 H 0.97002 * 120.00104 * 359.97438 * 1 2 3 27 27 H 0.97004 * 119.99981 * 0.02562 * 9 7 2 28 28 H 0.97004 * 119.99561 * 359.97438 * 14 12 10 29 29 H 1.08994 * 109.47063 * 59.99610 * 15 14 12 30 30 H 1.08998 * 109.46732 * 299.99403 * 15 14 12 31 31 H 1.09001 * 109.46994 * 59.99442 * 16 15 14 32 32 H 1.09002 * 109.46915 * 299.99835 * 16 15 14 33 33 H 1.08998 * 110.75807 * 85.06488 * 19 17 16 34 34 H 1.08998 * 110.91370 * 321.76573 * 19 17 16 35 35 H 1.09002 * 110.48740 * 156.62163 * 20 19 17 36 36 H 1.08998 * 110.48604 * 279.13048 * 20 19 17 37 37 H 1.08995 * 117.11858 * 159.22272 * 23 21 20 38 38 H 1.09005 * 118.10909 * 13.90670 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7001 6 1 3.5418 1.4400 0.6999 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2090 -0.0001 9 7 1.3274 -2.3877 -0.0005 10 6 2.0012 -3.5549 -0.0005 11 8 3.2161 -3.5550 -0.0001 12 6 1.2570 -4.8438 -0.0011 13 8 0.0426 -4.8437 -0.0011 14 7 1.9308 -6.0111 -0.0006 15 6 1.1982 -7.2798 -0.0017 16 6 2.1924 -8.4427 -0.0002 17 6 1.4274 -9.7677 -0.0007 18 1 0.7449 -9.8148 -0.8493 19 6 0.6528 -9.9469 1.3285 20 6 0.4764 -11.4832 1.4169 21 6 1.8022 -12.0514 0.8700 22 1 1.8155 -13.1013 0.5772 23 6 3.1272 -11.3346 1.2669 24 6 2.4087 -10.9576 -0.0303 25 1 2.8700 -11.2041 -0.9865 26 1 -0.4850 0.8400 0.0004 27 1 0.3573 -2.3877 -0.0005 28 1 2.9009 -6.0111 -0.0002 29 1 0.5726 -7.3372 -0.8924 30 1 0.5707 -7.3376 0.8876 31 1 2.8178 -8.3850 0.8907 32 1 2.8204 -8.3850 -0.8892 33 1 -0.3156 -9.4490 1.2815 34 1 1.2357 -9.5759 2.1716 35 1 0.3274 -11.7912 2.4518 36 1 -0.3611 -11.8072 0.7991 37 1 4.0485 -11.9108 1.1820 38 1 3.0968 -10.6155 2.0855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717100631.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:30 Heat of formation + Delta-G solvation = -84.407203 kcal Electronic energy + Delta-G solvation = -19446.792792 eV Core-core repulsion = 16288.314509 eV Total energy + Delta-G solvation = -3158.478283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32024 -40.59347 -39.13958 -36.76272 -36.05484 -33.57888 -33.16320 -31.26883 -28.48254 -27.34971 -24.85254 -24.39377 -22.98487 -21.27574 -20.51635 -20.39661 -19.77067 -18.74373 -17.67018 -17.40564 -16.83620 -16.72118 -15.95441 -15.76316 -15.67392 -15.38965 -14.69606 -14.53324 -14.24024 -13.72086 -13.66764 -13.45735 -13.04249 -12.96937 -12.58655 -12.45955 -12.29570 -12.11224 -12.10188 -11.82611 -11.70308 -11.66829 -11.46596 -10.84240 -10.43292 -10.28567 -10.21088 -10.19099 -8.66333 -6.11398 0.59940 1.41196 1.47321 1.56137 1.83971 2.29764 2.37251 2.79779 3.15130 3.29675 3.49071 3.71962 3.82593 4.02341 4.12471 4.13878 4.24450 4.32525 4.46632 4.54755 4.67279 4.70634 4.79775 4.89364 4.92751 5.11825 5.14852 5.15397 5.24838 5.30186 5.33590 5.36817 5.39733 5.50365 5.67777 6.16546 6.39240 6.81342 7.02119 7.27664 7.79444 8.49624 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.055777 B = 0.002997 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.880610 B = 9340.803843 C = 9656.669478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.511 5.511 10 C 0.389 3.611 11 O -0.617 6.617 12 C 0.516 3.484 13 O -0.568 6.568 14 N -0.694 5.694 15 C 0.117 3.883 16 C -0.111 4.111 17 C -0.056 4.056 18 H 0.086 0.914 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.171 4.171 22 H 0.119 0.881 23 C -0.156 4.156 24 C -0.163 4.163 25 H 0.113 0.887 26 H 0.289 0.711 27 H 0.401 0.599 28 H 0.416 0.584 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -20.702 1.221 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.117 0.883 9 N -0.145 5.145 10 C 0.174 3.826 11 O -0.507 6.507 12 C 0.299 3.701 13 O -0.448 6.448 14 N -0.347 5.347 15 C -0.005 4.005 16 C -0.148 4.148 17 C -0.075 4.075 18 H 0.104 0.896 19 C -0.170 4.170 20 C -0.133 4.133 21 C -0.189 4.189 22 H 0.136 0.864 23 C -0.193 4.193 24 C -0.181 4.181 25 H 0.131 0.869 26 H 0.099 0.901 27 H 0.235 0.765 28 H 0.253 0.747 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.173 -20.597 1.217 20.747 hybrid contribution 0.049 0.802 -0.069 0.806 sum 2.222 -19.795 1.149 19.953 Atomic orbital electron populations 1.69550 1.07857 1.30841 1.45165 1.26559 0.96512 1.03521 0.94363 0.84688 0.78002 0.74963 0.79218 1.18916 1.19094 1.18746 1.19988 0.93697 0.83071 1.50788 0.88301 1.41668 1.10247 1.04831 1.57778 1.19638 0.87881 0.85277 0.89809 1.90541 1.13796 1.87307 1.59026 1.20086 0.87015 0.86046 0.76919 1.90678 1.14619 1.88368 1.51101 1.45683 1.11571 1.04610 1.72789 1.21618 0.95443 0.81262 1.02193 1.21694 0.97411 0.92015 1.03718 1.21482 0.95647 0.91795 0.98613 0.89591 1.22659 1.00463 0.96671 0.97192 1.21916 0.95822 0.94219 1.01323 1.23710 0.92923 0.97405 1.04874 0.86356 1.23377 0.95262 1.02625 0.97995 1.23173 1.02218 0.96671 0.95997 0.86851 0.90075 0.76485 0.74695 0.91701 0.91641 0.90660 0.90278 0.91263 0.91471 0.91215 0.90474 0.87492 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.52 13.03 21.76 0.28 -48.24 16 2 C -0.01 -0.28 5.51 85.14 0.47 0.19 16 3 Si 1.01 40.89 29.56 68.60 2.03 42.92 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.35 -19.61 9.67 84.35 0.82 -18.79 16 8 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 9 N -0.51 -28.42 5.25 -308.88 -1.62 -30.04 16 10 C 0.39 20.20 7.82 87.08 0.68 20.88 16 11 O -0.62 -33.77 16.03 -3.71 -0.06 -33.83 16 12 C 0.52 22.86 7.87 87.08 0.69 23.55 16 13 O -0.57 -27.23 16.47 -3.55 -0.06 -27.29 16 14 N -0.69 -23.35 5.55 -465.01 -2.58 -25.93 16 15 C 0.12 3.05 5.52 86.38 0.48 3.52 16 16 C -0.11 -2.06 4.87 30.59 0.15 -1.91 16 17 C -0.06 -0.91 2.83 -9.72 -0.03 -0.94 16 18 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 19 C -0.13 -2.15 5.03 31.89 0.16 -1.99 16 20 C -0.10 -1.33 6.77 31.67 0.21 -1.12 16 21 C -0.17 -2.32 7.19 -9.03 -0.06 -2.38 16 22 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 23 C -0.16 -2.15 9.95 31.56 0.31 -1.83 16 24 C -0.16 -2.35 6.33 -9.99 -0.06 -2.41 16 25 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 27 H 0.40 22.51 7.35 -92.71 -0.68 21.83 16 28 H 0.42 13.03 7.93 -92.71 -0.74 12.30 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.76 7.38 -2.39 -0.02 1.74 16 31 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.18 8.01 -2.39 -0.02 1.16 16 34 H 0.07 1.14 7.31 -2.39 -0.02 1.13 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.33 7.27 -2.38 -0.02 1.31 16 Total: -1.00 -65.49 320.48 1.47 -64.02 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.33 Total: 41.62 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 3.81 Total: 16.77 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.92 Total: -104.21 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -0.12 Total: -61.11 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -65.49 1.47 -64.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717100631.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.391 kcal (2) G-P(sol) polarization free energy of solvation -65.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds