Wall clock time and date at job start Mon Mar 30 2020 04:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86800 * 119.99750 * 2 1 4 4 H 1.48509 * 109.46706 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47260 * 299.99743 * 3 2 1 6 6 H 1.48500 * 109.47291 * 59.99965 * 3 2 1 7 7 C 1.39580 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99861 * 179.97438 * 7 2 1 9 9 N 1.36121 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99931 * 179.97438 * 9 7 2 11 11 O 1.21502 * 120.00216 * 0.02562 * 10 9 7 12 12 C 1.48830 * 120.00026 * 179.97438 * 10 9 7 13 13 O 1.21448 * 119.99748 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00255 * 180.27015 * 12 10 9 15 15 C 1.46495 * 120.00196 * 177.05685 * 14 12 10 16 16 C 1.53002 * 112.85129 * 211.11621 * 15 14 12 17 17 C 1.53781 * 113.61516 * 48.80295 * 16 15 14 18 18 C 1.53947 * 87.01951 * 220.04896 * 17 16 15 19 19 C 1.53775 * 87.11421 * 25.36440 * 18 17 16 20 20 C 1.53781 * 113.61335 * 79.91825 * 15 14 12 21 21 C 1.54045 * 86.98782 * 270.83881 * 20 15 14 22 22 C 1.53780 * 87.07774 * 334.56869 * 21 20 15 23 23 H 0.96999 * 120.00183 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 25 25 H 0.97005 * 119.99524 * 357.07307 * 14 12 10 26 26 H 1.09000 * 112.84932 * 179.97438 * 16 15 14 27 27 H 1.08997 * 113.61473 * 334.57562 * 17 16 15 28 28 H 1.09003 * 113.60908 * 105.46907 * 17 16 15 29 29 H 1.09006 * 113.53925 * 270.81273 * 18 17 16 30 30 H 1.09000 * 113.74121 * 139.94729 * 18 17 16 31 31 H 1.09006 * 113.61505 * 220.09271 * 19 18 17 32 32 H 1.09000 * 113.69039 * 89.19377 * 19 18 17 33 33 H 1.08998 * 113.61493 * 25.43582 * 20 15 14 34 34 H 1.09002 * 113.61253 * 156.33044 * 20 15 14 35 35 H 1.08999 * 113.62252 * 220.02027 * 21 20 15 36 36 H 1.08999 * 113.69010 * 89.12538 * 21 20 15 37 37 H 1.09008 * 113.61675 * 270.88181 * 22 21 20 38 38 H 1.09004 * 113.61886 * 139.97707 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.7042 1.3464 -0.0006 5 1 1.8854 2.3964 -1.2125 6 1 1.8854 2.3965 1.2125 7 6 2.0081 -1.2088 0.0005 8 1 3.0881 -1.2088 0.0001 9 7 1.3275 -2.3877 0.0016 10 6 2.0014 -3.5549 0.0016 11 8 3.2164 -3.5549 0.0011 12 6 1.2572 -4.8438 0.0033 13 8 0.0427 -4.8437 0.0043 14 7 1.9311 -6.0110 0.0088 15 6 1.1999 -7.2786 0.0757 16 6 1.9783 -8.3759 0.8044 17 6 2.5569 -7.9265 2.1564 18 6 3.8177 -8.7319 1.7936 19 6 3.4299 -8.5269 0.3197 20 6 0.6213 -7.7280 -1.2764 21 6 -0.6393 -6.9205 -0.9133 22 6 -0.2518 -7.1277 0.5603 23 1 -0.4850 0.8400 -0.0004 24 1 0.3574 -2.3876 0.0016 25 1 2.9003 -6.0116 -0.0312 26 1 1.4340 -9.3189 0.8545 27 1 2.7289 -6.8522 2.2224 28 1 2.0166 -8.3232 3.0160 29 1 3.7770 -9.7726 2.1151 30 1 4.7489 -8.2388 2.0727 31 1 3.5935 -9.4076 -0.3014 32 1 3.8406 -7.6174 -0.1188 33 1 1.1624 -7.3326 -2.1360 34 1 0.4479 -8.8022 -1.3418 35 1 -1.5699 -7.4139 -1.1936 36 1 -0.5994 -5.8792 -1.2330 37 1 -0.6634 -8.0380 0.9963 38 1 -0.4150 -6.2478 1.1827 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717889559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:51 Heat of formation + Delta-G solvation = -12.388348 kcal Electronic energy + Delta-G solvation = -20897.477185 eV Core-core repulsion = 17742.121873 eV Total energy + Delta-G solvation = -3155.355311 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02516 -38.71360 -37.54879 -36.00478 -34.36741 -32.70270 -31.38221 -27.26078 -26.08823 -25.86515 -24.91064 -23.35821 -22.43924 -19.74644 -19.31863 -18.64313 -18.34812 -17.11708 -15.96476 -15.53331 -15.31777 -14.99202 -14.72420 -14.58089 -13.95875 -13.64301 -13.11727 -12.90353 -12.74022 -12.57075 -12.39457 -12.01912 -11.76719 -11.49712 -11.39623 -11.22881 -10.53542 -10.48284 -10.43227 -10.40261 -10.38029 -10.14296 -9.86191 -9.73136 -9.50501 -8.45345 -8.22807 -8.11511 -6.67629 -3.99812 2.41885 3.13067 3.15807 3.22128 3.40355 4.05724 4.23391 4.41026 4.61189 4.66518 4.82026 4.86108 5.04250 5.17914 5.19927 5.24690 5.37308 5.57354 5.63723 5.79063 5.80810 5.88941 5.89690 5.96229 6.01762 6.03990 6.16003 6.27737 6.44978 6.52733 6.55585 6.91790 7.02686 7.30635 7.72566 7.91674 8.33619 8.66045 8.96523 9.31896 9.84894 10.47203 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.004963 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.906419 B = 5640.248576 C = 6255.059493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.937 3.063 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.112 0.888 9 N -0.499 5.499 10 C 0.393 3.607 11 O -0.599 6.599 12 C 0.508 3.492 13 O -0.528 6.528 14 N -0.689 5.689 15 C 0.157 3.843 16 C -0.101 4.101 17 C -0.136 4.136 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.133 4.133 23 H 0.280 0.720 24 H 0.405 0.595 25 H 0.409 0.591 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -14.860 1.075 14.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.763 3.237 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.130 0.870 9 N -0.134 5.134 10 C 0.177 3.823 11 O -0.488 6.488 12 C 0.294 3.706 13 O -0.405 6.405 14 N -0.342 5.342 15 C 0.070 3.930 16 C -0.120 4.120 17 C -0.174 4.174 18 C -0.180 4.180 19 C -0.175 4.175 20 C -0.190 4.190 21 C -0.178 4.178 22 C -0.171 4.171 23 H 0.090 0.910 24 H 0.240 0.760 25 H 0.247 0.753 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.416 -14.699 1.090 14.807 hybrid contribution 0.230 0.681 -0.056 0.721 sum 1.646 -14.018 1.034 14.152 Atomic orbital electron populations 1.69489 1.06498 1.29228 1.45484 1.25572 0.95616 1.00437 0.95943 0.85683 0.79883 0.80079 0.78065 1.18738 1.20298 1.20292 1.19918 0.93975 0.81906 1.47788 0.87003 1.41559 1.10460 1.04215 1.57140 1.19047 0.87850 0.84322 0.91033 1.90581 1.12994 1.86675 1.58522 1.20609 0.87616 0.85748 0.76624 1.90575 1.13883 1.87656 1.48433 1.45277 1.10757 1.03737 1.74471 1.21166 0.91922 0.83737 0.96205 1.22710 0.95266 0.97757 0.96297 1.22964 0.96645 1.01098 0.96657 1.22841 0.98408 1.00220 0.96529 1.22920 0.95949 1.02057 0.96601 1.23547 0.98411 0.99890 0.97199 1.23439 0.95778 1.02491 0.96050 1.23242 0.93184 1.01906 0.98718 0.90994 0.76014 0.75328 0.88249 0.89479 0.91640 0.90465 0.91364 0.91461 0.89955 0.91629 0.90163 0.93154 0.86563 0.91201 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.10 13.03 55.53 0.72 -22.38 16 2 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.00 29.56 -169.99 -5.02 14.98 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 7 C -0.31 -8.35 9.67 -15.15 -0.15 -8.50 16 8 H 0.11 3.14 7.15 -52.48 -0.38 2.77 16 9 N -0.50 -13.14 5.25 -11.59 -0.06 -13.20 16 10 C 0.39 9.72 7.82 -11.88 -0.09 9.63 16 11 O -0.60 -15.92 16.04 5.36 0.09 -15.84 16 12 C 0.51 10.58 7.45 -11.88 -0.09 10.49 16 13 O -0.53 -11.27 10.01 5.41 0.05 -11.22 16 14 N -0.69 -11.63 4.41 -47.47 -0.21 -11.84 16 15 C 0.16 2.20 1.20 -131.01 -0.16 2.04 16 16 C -0.10 -1.14 3.30 -89.81 -0.30 -1.44 16 17 C -0.14 -1.58 7.55 -25.83 -0.20 -1.77 16 18 C -0.14 -1.42 8.09 -25.83 -0.21 -1.63 16 19 C -0.14 -1.45 7.49 -25.92 -0.19 -1.64 16 20 C -0.15 -2.03 7.46 -25.78 -0.19 -2.22 16 21 C -0.14 -2.17 7.29 -25.78 -0.19 -2.36 16 22 C -0.13 -1.99 6.72 -25.92 -0.17 -2.16 16 23 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 24 H 0.40 10.67 7.35 -40.82 -0.30 10.37 16 25 H 0.41 6.75 6.35 -40.82 -0.26 6.49 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.20 7.43 -51.93 -0.39 0.82 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.95 6.38 -51.93 -0.33 0.62 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.12 2.17 5.24 -53.02 -0.28 1.89 16 37 H 0.07 0.89 8.10 -51.92 -0.42 0.47 16 38 H 0.09 1.67 6.01 -51.93 -0.31 1.35 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -28.60 306.55 -7.02 -35.62 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -5.18 Total: 18.10 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.03 Total: 1.16 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.45 Total: -47.42 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.14 Total: -27.06 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.60 -7.02 -35.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717889559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.230 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds