Wall clock time and date at job start Mon Mar 30 2020 04:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46565 * 179.97438 * 10 9 7 12 12 C 1.48552 * 111.00634 * 285.41997 * 11 10 9 13 13 C 1.54381 * 104.60072 * 200.96301 * 12 11 10 14 14 H 1.09002 * 110.32040 * 264.96023 * 13 12 11 15 15 C 1.52993 * 110.41412 * 142.79198 * 13 12 11 16 16 F 1.39901 * 109.46938 * 304.31864 * 15 13 12 17 17 F 1.39899 * 109.47070 * 64.31122 * 15 13 12 18 18 F 1.39899 * 109.47510 * 184.31407 * 15 13 12 19 19 C 1.54263 * 105.05722 * 23.85318 * 13 12 11 20 20 H 1.08991 * 110.32497 * 118.89504 * 19 13 12 21 21 C 1.53004 * 110.32554 * 241.10753 * 19 13 12 22 22 N 1.46891 * 109.47179 * 182.09010 * 21 19 13 23 23 C 1.48570 * 110.99582 * 170.00064 * 11 10 9 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 26 26 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 27 27 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 28 28 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 29 29 H 1.09001 * 110.41449 * 319.74630 * 12 11 10 30 30 H 1.09000 * 110.40968 * 82.18199 * 12 11 10 31 31 H 1.08999 * 109.46683 * 302.09479 * 21 19 13 32 32 H 1.09000 * 109.46967 * 62.08933 * 21 19 13 33 33 H 1.00899 * 111.00280 * 56.04723 * 22 21 19 34 34 H 1.00904 * 111.00238 * 179.97438 * 22 21 19 35 35 H 1.09001 * 110.41300 * 277.82358 * 23 11 10 36 36 H 1.08995 * 110.40744 * 40.14868 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4906 -2.6364 -0.0001 12 6 6.0231 -2.2675 -1.3370 13 6 7.4650 -2.8190 -1.3473 14 1 8.1699 -2.0409 -1.0545 15 6 7.8190 -3.3613 -2.7334 16 9 6.8764 -4.3230 -3.1126 17 9 7.8138 -2.3128 -3.6597 18 9 9.0903 -3.9438 -2.6956 19 6 7.4650 -3.9603 -0.3095 20 1 7.7153 -4.9071 -0.7879 21 6 8.4545 -3.6546 0.8167 22 7 8.4762 -4.7745 1.7669 23 6 6.0231 -4.0024 0.2406 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8746 -0.6807 0.8905 27 1 3.6580 -3.1505 0.8896 28 1 3.6587 -3.1500 -0.8904 29 1 5.4315 -2.7352 -2.1241 30 1 6.0295 -1.1843 -1.4579 31 1 9.4507 -3.5147 0.3969 32 1 8.1472 -2.7454 1.3335 33 1 8.6956 -5.6413 1.2994 34 1 9.1232 -4.5968 2.5206 35 1 6.0295 -4.2253 1.3075 36 1 5.4303 -4.7417 -0.2979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720871983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:47 Heat of formation + Delta-G solvation = -158.690733 kcal Electronic energy + Delta-G solvation = -21268.470549 eV Core-core repulsion = 17564.914350 eV Total energy + Delta-G solvation = -3703.556199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.22658 -47.71983 -47.67174 -39.32540 -35.27909 -33.44228 -32.18970 -29.93178 -28.84720 -25.74207 -25.03422 -23.03288 -21.50680 -20.45091 -19.98346 -18.54075 -18.25979 -17.72902 -16.75101 -16.13059 -15.27002 -15.01414 -14.59523 -14.50527 -14.33657 -14.18464 -14.12339 -14.02824 -13.91448 -13.80919 -13.52785 -12.76792 -12.62796 -12.21597 -11.96560 -11.68800 -11.52642 -11.30754 -11.21298 -10.89432 -10.84183 -10.10206 -9.74532 -9.72997 -9.21167 -8.88997 -8.52328 -8.13268 -6.03476 -4.01793 2.60999 3.33439 3.40348 3.44759 3.60839 3.73412 3.87238 4.30159 4.45397 4.47029 4.58733 4.70701 4.76616 5.04439 5.14018 5.29447 5.31292 5.53194 5.67155 5.76193 5.81290 5.98495 6.08616 6.18300 6.30582 6.73954 6.87786 7.06791 7.07918 7.20130 7.44727 7.54750 7.83131 8.53530 9.00640 9.58979 11.09937 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.005315 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.605290 B = 5266.674774 C = 5861.454813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.005 4.005 10 C 0.060 3.940 11 N -0.506 5.506 12 C 0.040 3.960 13 C -0.139 4.139 14 H 0.123 0.877 15 C 0.456 3.544 16 F -0.180 7.180 17 F -0.181 7.181 18 F -0.187 7.187 19 C -0.082 4.082 20 H 0.079 0.921 21 C 0.074 3.926 22 N -0.847 5.847 23 C 0.041 3.959 24 H 0.263 0.737 25 H 0.014 0.986 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.026 0.974 32 H 0.087 0.913 33 H 0.338 0.662 34 H 0.343 0.657 35 H 0.101 0.899 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.413 -8.308 -2.088 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.043 4.043 10 C -0.067 4.067 11 N -0.230 5.230 12 C -0.088 4.088 13 C -0.160 4.160 14 H 0.141 0.859 15 C 0.402 3.598 16 F -0.162 7.162 17 F -0.163 7.163 18 F -0.168 7.168 19 C -0.101 4.101 20 H 0.097 0.903 21 C -0.057 4.057 22 N -0.376 5.376 23 C -0.087 4.087 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.044 0.956 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 19.634 -7.647 -1.574 21.129 hybrid contribution 1.121 0.156 -1.270 1.701 sum 20.755 -7.491 -2.844 22.248 Atomic orbital electron populations 1.69915 1.06327 1.26909 1.51136 1.24991 0.94701 0.99166 0.94473 0.86752 0.80309 0.83492 0.78567 1.20232 1.21514 1.18975 1.21086 0.89424 0.94521 1.51027 0.91113 1.19515 0.96450 0.91518 0.96801 1.22325 0.83336 1.00704 1.00347 1.65562 1.11118 1.21768 1.24554 1.23127 0.90191 1.02319 0.93180 1.23355 1.02589 1.00785 0.89261 0.85922 1.20560 0.74187 0.75908 0.89156 1.93184 1.65083 1.65161 1.92744 1.93195 1.96208 1.57536 1.69334 1.93161 1.41525 1.85240 1.96873 1.21898 0.97661 0.96222 0.94334 0.90275 1.21792 0.95874 0.95307 0.92727 1.58619 1.59823 1.04948 1.14210 1.23152 0.91885 0.90919 1.02743 0.92731 0.96780 0.96072 0.91029 0.94958 0.92552 0.88598 0.95559 0.89486 0.84997 0.84403 0.88107 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.12 4.16 -27.88 -0.12 -0.24 16 10 C 0.06 1.19 4.77 -3.82 -0.02 1.18 16 11 N -0.51 -8.32 5.34 -229.97 -1.23 -9.55 16 12 C 0.04 0.60 5.25 -2.19 -0.01 0.58 16 13 C -0.14 -1.61 2.72 -89.24 -0.24 -1.85 16 14 H 0.12 1.23 7.71 -51.93 -0.40 0.83 16 15 C 0.46 5.44 2.53 37.15 0.09 5.54 16 16 F -0.18 -2.38 16.05 2.25 0.04 -2.34 16 17 F -0.18 -2.31 17.17 2.25 0.04 -2.28 16 18 F -0.19 -2.11 16.93 2.25 0.04 -2.07 16 19 C -0.08 -0.90 2.54 -89.23 -0.23 -1.12 16 20 H 0.08 0.82 7.39 -51.93 -0.38 0.44 16 21 C 0.07 0.70 5.93 -3.83 -0.02 0.68 16 22 N -0.85 -7.15 9.06 -10.37 -0.09 -7.25 16 23 C 0.04 0.56 5.93 -2.17 -0.01 0.55 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 25 H 0.01 0.33 6.52 -51.93 -0.34 0.00 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 27 H 0.07 1.44 8.08 -51.93 -0.42 1.02 16 28 H 0.03 0.65 7.77 -51.93 -0.40 0.25 16 29 H 0.06 0.88 6.83 -51.93 -0.35 0.53 16 30 H 0.10 1.46 7.85 -51.93 -0.41 1.05 16 31 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.34 2.43 8.99 -39.29 -0.35 2.08 16 34 H 0.34 2.33 9.08 -39.29 -0.36 1.97 16 35 H 0.10 1.41 7.45 -51.93 -0.39 1.02 16 36 H 0.04 0.60 7.99 -51.93 -0.42 0.18 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -30.63 301.49 -6.59 -37.22 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.04 Total: -0.22 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.99 Total: -8.05 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.55 Total: -44.04 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.11 Total: -6.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.63 -6.59 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720871983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.472 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds