Wall clock time and date at job start Mon Mar 30 2020 04:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46565 * 179.97438 * 10 9 7 12 12 C 1.48552 * 111.00634 * 285.41997 * 11 10 9 13 13 C 1.54381 * 104.60072 * 200.96301 * 12 11 10 14 14 H 1.09002 * 110.32040 * 264.96023 * 13 12 11 15 15 C 1.52993 * 110.41412 * 142.79198 * 13 12 11 16 16 F 1.39901 * 109.46938 * 304.31864 * 15 13 12 17 17 F 1.39899 * 109.47070 * 64.31122 * 15 13 12 18 18 F 1.39899 * 109.47510 * 184.31407 * 15 13 12 19 19 C 1.54263 * 105.05722 * 23.85318 * 13 12 11 20 20 H 1.08991 * 110.32497 * 118.89504 * 19 13 12 21 21 C 1.53004 * 110.32554 * 241.10753 * 19 13 12 22 22 N 1.46891 * 109.47179 * 182.09010 * 21 19 13 23 23 C 1.48570 * 110.99582 * 170.00064 * 11 10 9 24 24 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 26 26 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 27 27 H 1.08996 * 109.47332 * 299.99701 * 10 9 7 28 28 H 1.08996 * 109.46646 * 60.00565 * 10 9 7 29 29 H 1.09001 * 110.41449 * 319.74630 * 12 11 10 30 30 H 1.09000 * 110.40968 * 82.18199 * 12 11 10 31 31 H 1.08999 * 109.46683 * 302.09479 * 21 19 13 32 32 H 1.09000 * 109.46967 * 62.08933 * 21 19 13 33 33 H 1.00899 * 111.00280 * 56.04723 * 22 21 19 34 34 H 1.00904 * 111.00238 * 179.97438 * 22 21 19 35 35 H 1.09001 * 110.41300 * 277.82358 * 23 11 10 36 36 H 1.08995 * 110.40744 * 40.14868 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 7 5.4906 -2.6364 -0.0001 12 6 6.0231 -2.2675 -1.3370 13 6 7.4650 -2.8190 -1.3473 14 1 8.1699 -2.0409 -1.0545 15 6 7.8190 -3.3613 -2.7334 16 9 6.8764 -4.3230 -3.1126 17 9 7.8138 -2.3128 -3.6597 18 9 9.0903 -3.9438 -2.6956 19 6 7.4650 -3.9603 -0.3095 20 1 7.7153 -4.9071 -0.7879 21 6 8.4545 -3.6546 0.8167 22 7 8.4762 -4.7745 1.7669 23 6 6.0231 -4.0024 0.2406 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 -0.8894 26 1 3.8746 -0.6807 0.8905 27 1 3.6580 -3.1505 0.8896 28 1 3.6587 -3.1500 -0.8904 29 1 5.4315 -2.7352 -2.1241 30 1 6.0295 -1.1843 -1.4579 31 1 9.4507 -3.5147 0.3969 32 1 8.1472 -2.7454 1.3335 33 1 8.6956 -5.6413 1.2994 34 1 9.1232 -4.5968 2.5206 35 1 6.0295 -4.2253 1.3075 36 1 5.4303 -4.7417 -0.2979 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720871983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:46 Heat of formation + Delta-G solvation = -181.482473 kcal Electronic energy + Delta-G solvation = -21269.458873 eV Core-core repulsion = 17564.914350 eV Total energy + Delta-G solvation = -3704.544523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.18431 -48.66249 -48.64998 -40.44867 -36.47525 -35.05090 -33.73258 -31.52869 -29.97179 -27.08432 -26.31954 -24.27262 -22.84072 -21.65502 -21.33896 -19.51004 -19.21853 -19.09784 -18.52516 -17.07189 -16.46897 -16.14779 -15.88864 -15.68123 -15.53486 -15.34965 -15.14377 -15.09786 -14.99906 -14.79280 -14.75796 -14.50845 -14.05164 -13.57628 -13.42661 -12.96779 -12.68791 -12.66561 -12.49107 -12.25305 -11.91911 -11.78540 -11.67264 -11.49778 -11.36040 -10.75630 -9.52140 -9.48515 -8.29220 -6.33697 1.37919 1.39048 1.51585 1.65287 2.37370 2.63901 2.77254 2.91037 3.06713 3.19738 3.42802 3.60729 3.83914 3.93302 4.15554 4.21684 4.32759 4.40326 4.45621 4.64240 4.70797 4.80508 4.81447 4.96105 5.09714 5.14606 5.27377 5.43088 5.62346 5.88538 6.02588 6.28121 6.29207 6.67670 6.74052 7.31267 8.87597 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.022066 B = 0.005315 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.605290 B = 5266.674774 C = 5861.454813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.003 3.997 10 C 0.072 3.928 11 N -0.509 5.509 12 C 0.035 3.965 13 C -0.129 4.129 14 H 0.146 0.854 15 C 0.460 3.540 16 F -0.190 7.190 17 F -0.186 7.186 18 F -0.179 7.179 19 C -0.073 4.073 20 H 0.090 0.910 21 C 0.080 3.920 22 N -0.856 5.856 23 C 0.042 3.958 24 H 0.267 0.733 25 H 0.018 0.982 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.346 0.654 34 H 0.354 0.646 35 H 0.099 0.901 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.289 -7.766 -2.005 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.050 0.950 9 C -0.035 4.035 10 C -0.056 4.056 11 N -0.233 5.233 12 C -0.094 4.094 13 C -0.149 4.149 14 H 0.164 0.836 15 C 0.406 3.594 16 F -0.171 7.171 17 F -0.168 7.168 18 F -0.161 7.161 19 C -0.093 4.093 20 H 0.108 0.892 21 C -0.051 4.051 22 N -0.388 5.388 23 C -0.086 4.086 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.117 0.883 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.540 -7.131 -1.488 23.688 hybrid contribution 0.177 -0.120 -1.297 1.314 sum 22.717 -7.251 -2.784 24.008 Atomic orbital electron populations 1.70067 1.08333 1.28208 1.52598 1.25979 0.95576 1.03502 0.93969 0.85632 0.79477 0.78107 0.79267 1.19121 1.21036 1.16938 1.21432 0.92026 0.93189 1.50637 0.95042 1.19377 0.93247 0.94106 0.96782 1.21990 0.85965 0.97991 0.99612 1.65460 1.08400 1.23733 1.25705 1.23144 0.92092 1.02303 0.91844 1.23295 1.00865 1.01486 0.89258 0.83602 1.20547 0.74243 0.75619 0.89032 1.93172 1.65546 1.65540 1.92853 1.93189 1.96235 1.57751 1.69577 1.93177 1.40952 1.85096 1.96827 1.21868 0.96131 0.96568 0.94711 0.89199 1.21682 0.96114 0.95129 0.92188 1.58575 1.60579 1.05092 1.14506 1.23167 0.93511 0.89122 1.02757 0.92457 0.96350 0.95880 0.91724 0.95967 0.93717 0.88814 0.93666 0.90648 0.84082 0.83233 0.88292 0.94525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 2 C 0.01 0.39 5.47 84.65 0.46 0.85 16 3 Si 0.95 44.77 27.47 68.60 1.88 46.65 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 7 C -0.53 -31.25 9.66 25.60 0.25 -31.01 16 8 H 0.03 2.02 7.99 -2.92 -0.02 1.99 16 9 C 0.00 0.13 4.16 29.85 0.12 0.25 16 10 C 0.07 2.90 4.77 86.30 0.41 3.31 16 11 N -0.51 -16.16 5.34 -881.49 -4.70 -20.86 16 12 C 0.03 0.97 5.25 86.45 0.45 1.42 16 13 C -0.13 -2.64 2.72 -9.90 -0.03 -2.67 16 14 H 0.15 2.38 7.71 -2.39 -0.02 2.36 16 15 C 0.46 9.89 2.53 71.98 0.18 10.08 16 16 F -0.19 -4.71 16.05 44.97 0.72 -3.98 16 17 F -0.19 -4.37 17.17 44.97 0.77 -3.59 16 18 F -0.18 -3.52 16.93 44.97 0.76 -2.76 16 19 C -0.07 -1.42 2.54 -9.89 -0.03 -1.45 16 20 H 0.09 1.61 7.39 -2.39 -0.02 1.59 16 21 C 0.08 1.26 5.93 86.31 0.51 1.78 16 22 N -0.86 -12.18 9.06 -186.73 -1.69 -13.87 16 23 C 0.04 1.09 5.93 86.45 0.51 1.60 16 24 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.02 0.85 6.52 -2.39 -0.02 0.84 16 26 H 0.02 1.08 7.57 -2.39 -0.02 1.07 16 27 H 0.06 2.64 8.08 -2.39 -0.02 2.62 16 28 H 0.02 0.92 7.77 -2.39 -0.02 0.90 16 29 H 0.04 1.37 6.83 -2.39 -0.02 1.35 16 30 H 0.09 2.67 7.85 -2.39 -0.02 2.65 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.35 4.01 8.99 -89.69 -0.81 3.20 16 34 H 0.35 3.86 9.08 -89.69 -0.81 3.04 16 35 H 0.10 2.63 7.45 -2.39 -0.02 2.61 16 36 H 0.04 1.00 7.99 -2.39 -0.02 0.98 16 Total: -1.00 -66.30 301.49 0.33 -65.98 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -0.57 Total: 8.31 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 2.85 Total: -15.82 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -6.10 Total: -94.77 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 2.26 Total: -10.34 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -66.30 0.33 -65.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720871983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.507 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds