Wall clock time and date at job start Mon Mar 30 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99796 * 2 1 4 4 H 1.48504 * 109.46601 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47175 * 300.00044 * 3 2 1 6 6 H 1.48502 * 109.46909 * 60.00199 * 3 2 1 7 7 C 1.37880 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47280 * 180.02562 * 10 9 7 12 12 C 1.48554 * 111.00345 * 169.99833 * 11 10 9 13 13 C 1.54380 * 104.59867 * 200.95824 * 12 11 10 14 14 H 1.09002 * 110.32481 * 142.74718 * 13 12 11 15 15 C 1.53000 * 110.32562 * 264.85422 * 13 12 11 16 16 N 1.46897 * 109.47269 * 292.17326 * 15 13 12 17 17 C 1.54259 * 105.05816 * 23.85212 * 13 12 11 18 18 H 1.09000 * 110.32369 * 241.10456 * 17 13 12 19 19 C 1.52995 * 110.32660 * 118.89690 * 17 13 12 20 20 F 1.39907 * 109.47154 * 59.99642 * 19 17 13 21 21 F 1.39900 * 109.47612 * 179.97438 * 19 17 13 22 22 F 1.39899 * 109.47149 * 300.00272 * 19 17 13 23 23 C 1.48562 * 111.00089 * 54.57725 * 11 10 9 24 24 H 0.96998 * 120.00277 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47459 * 60.00371 * 9 7 2 26 26 H 1.09002 * 109.47267 * 300.00045 * 9 7 2 27 27 H 1.08996 * 109.47506 * 59.99492 * 10 9 7 28 28 H 1.09002 * 109.46775 * 299.99913 * 10 9 7 29 29 H 1.09001 * 110.41497 * 82.17879 * 12 11 10 30 30 H 1.09002 * 110.41353 * 319.73551 * 12 11 10 31 31 H 1.09005 * 109.46832 * 52.16735 * 15 13 12 32 32 H 1.08999 * 109.47420 * 172.16978 * 15 13 12 33 33 H 1.00904 * 111.00366 * 180.02562 * 16 15 13 34 34 H 1.00907 * 110.99567 * 303.94984 * 16 15 13 35 35 H 1.09000 * 110.41073 * 277.82090 * 23 11 10 36 36 H 1.09000 * 110.41044 * 40.14553 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4275 -6.0781 -0.2420 13 6 1.5097 -7.2130 -0.7452 14 1 2.0137 -7.7927 -1.5185 15 6 1.1012 -8.1207 0.4167 16 7 2.2781 -8.8528 0.9034 17 6 0.2738 -6.4991 -1.3304 18 1 -0.6253 -6.7944 -0.7896 19 6 0.1296 -6.8210 -2.8192 20 9 -0.0196 -8.2021 -2.9854 21 9 -0.9956 -6.1660 -3.3312 22 9 1.2718 -6.3899 -3.5023 23 6 0.5488 -4.9931 -1.1317 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8893 28 1 2.8719 -3.6042 -0.8906 29 1 2.9214 -6.3712 0.6844 30 1 3.1652 -5.8207 -1.0021 31 1 0.6909 -7.5145 1.2244 32 1 0.3473 -8.8302 0.0759 33 1 2.0341 -9.4602 1.6714 34 1 2.7150 -9.3723 0.1567 35 1 -0.3719 -4.4691 -0.8751 36 1 0.9917 -4.5638 -2.0304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720871986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:49 Heat of formation + Delta-G solvation = -162.016811 kcal Electronic energy + Delta-G solvation = -21280.639373 eV Core-core repulsion = 17576.938945 eV Total energy + Delta-G solvation = -3703.700429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.11278 -47.60967 -47.55337 -39.22504 -35.21939 -33.38963 -32.13335 -29.64486 -28.47586 -25.61303 -24.90602 -23.07274 -21.71948 -20.35271 -19.80341 -18.41752 -18.14445 -17.61966 -16.36521 -16.02964 -15.24116 -14.85865 -14.51022 -14.44923 -14.36397 -14.25236 -14.01640 -13.84660 -13.80030 -13.67742 -13.42548 -12.84166 -12.23799 -12.00762 -11.76743 -11.50438 -11.37705 -11.11573 -11.03060 -10.89018 -10.72533 -10.49105 -9.94427 -9.36794 -9.13588 -8.84283 -8.36442 -7.98024 -6.00865 -4.03233 2.72860 3.31382 3.38868 3.42932 3.72400 3.85109 3.99455 4.38669 4.43021 4.62762 4.71118 4.79782 4.86386 5.15644 5.24676 5.35648 5.39620 5.61641 5.78678 5.91067 5.99598 6.15203 6.18763 6.34341 6.39767 6.88045 6.92921 7.24408 7.29174 7.37824 7.69764 7.83720 8.02880 8.41126 9.03660 9.60832 11.10595 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.005030 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.101489 B = 5565.649052 C = 6303.112660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.023 3.977 10 C 0.051 3.949 11 N -0.504 5.504 12 C 0.040 3.960 13 C -0.081 4.081 14 H 0.078 0.922 15 C 0.074 3.926 16 N -0.847 5.847 17 C -0.140 4.140 18 H 0.122 0.878 19 C 0.456 3.544 20 F -0.188 7.188 21 F -0.180 7.180 22 F -0.181 7.181 23 C 0.044 3.956 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.025 0.975 27 H 0.068 0.932 28 H 0.024 0.976 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.343 0.657 34 H 0.338 0.662 35 H 0.099 0.901 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -18.361 -2.749 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.076 4.076 11 N -0.228 5.228 12 C -0.088 4.088 13 C -0.101 4.101 14 H 0.096 0.904 15 C -0.057 4.057 16 N -0.376 5.376 17 C -0.161 4.161 18 H 0.140 0.860 19 C 0.402 3.598 20 F -0.170 7.170 21 F -0.162 7.162 22 F -0.162 7.162 23 C -0.084 4.084 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.561 -17.545 -2.074 17.676 hybrid contribution 0.233 0.138 -1.464 1.489 sum 0.794 -17.406 -3.538 17.780 Atomic orbital electron populations 1.69973 1.06035 1.26525 1.50731 1.24991 0.94828 0.99217 0.95243 0.86537 0.80116 0.83777 0.77581 1.19741 1.21043 1.20962 1.21210 0.93058 0.90962 1.50794 0.92660 1.19163 0.94004 0.90438 0.97805 1.22527 0.97132 0.88325 0.99574 1.65571 1.14210 1.03936 1.39074 1.23168 0.94320 0.90097 1.01186 1.21891 0.93914 0.96849 0.97429 0.90410 1.21800 0.91061 0.95555 0.97295 1.58634 1.29911 1.35488 1.13609 1.23373 1.03275 1.00882 0.88538 0.85962 1.20575 0.73717 0.73870 0.91663 1.93155 1.95533 1.31679 1.96583 1.93200 1.52675 1.81090 1.89202 1.93179 1.51021 1.89560 1.82460 1.23073 0.99807 0.90402 0.95107 0.93027 0.96464 0.95630 0.91362 0.95738 0.88413 0.94097 0.89452 0.95550 0.84478 0.85042 0.88225 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.69 -27.89 -0.13 0.46 16 10 C 0.05 1.08 5.00 -3.83 -0.02 1.06 16 11 N -0.50 -8.85 5.49 -229.98 -1.26 -10.11 16 12 C 0.04 0.59 5.97 -2.19 -0.01 0.57 16 13 C -0.08 -0.96 2.52 -89.24 -0.23 -1.19 16 14 H 0.08 0.88 7.39 -51.93 -0.38 0.49 16 15 C 0.07 0.75 5.91 -3.83 -0.02 0.72 16 16 N -0.85 -7.54 9.14 -10.37 -0.09 -7.64 16 17 C -0.14 -1.79 2.73 -89.24 -0.24 -2.03 16 18 H 0.12 1.37 7.71 -51.93 -0.40 0.97 16 19 C 0.46 5.99 2.53 37.16 0.09 6.08 16 20 F -0.19 -2.30 16.92 2.25 0.04 -2.26 16 21 F -0.18 -2.55 17.17 2.25 0.04 -2.51 16 22 F -0.18 -2.60 16.05 2.25 0.04 -2.57 16 23 C 0.04 0.73 4.44 -2.18 -0.01 0.72 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.46 6.84 -51.93 -0.36 0.10 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 29 H 0.10 1.42 7.50 -51.93 -0.39 1.03 16 30 H 0.04 0.61 7.82 -51.93 -0.41 0.21 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.34 2.45 9.08 -39.29 -0.36 2.09 16 34 H 0.34 2.58 8.99 -39.29 -0.35 2.23 16 35 H 0.10 1.75 7.67 -51.93 -0.40 1.35 16 36 H 0.06 1.00 7.07 -51.93 -0.37 0.63 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -29.90 303.83 -6.98 -36.88 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.05 Total: 0.08 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.98 Total: -7.06 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.62 Total: -43.78 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.11 Total: -7.34 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.90 -6.98 -36.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720871986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.135 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds