Wall clock time and date at job start Mon Mar 30 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99796 * 2 1 4 4 H 1.48504 * 109.46601 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47175 * 300.00044 * 3 2 1 6 6 H 1.48502 * 109.46909 * 60.00199 * 3 2 1 7 7 C 1.37880 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47037 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47280 * 180.02562 * 10 9 7 12 12 C 1.48554 * 111.00345 * 169.99833 * 11 10 9 13 13 C 1.54380 * 104.59867 * 200.95824 * 12 11 10 14 14 H 1.09002 * 110.32481 * 142.74718 * 13 12 11 15 15 C 1.53000 * 110.32562 * 264.85422 * 13 12 11 16 16 N 1.46897 * 109.47269 * 292.17326 * 15 13 12 17 17 C 1.54259 * 105.05816 * 23.85212 * 13 12 11 18 18 H 1.09000 * 110.32369 * 241.10456 * 17 13 12 19 19 C 1.52995 * 110.32660 * 118.89690 * 17 13 12 20 20 F 1.39907 * 109.47154 * 59.99642 * 19 17 13 21 21 F 1.39900 * 109.47612 * 179.97438 * 19 17 13 22 22 F 1.39899 * 109.47149 * 300.00272 * 19 17 13 23 23 C 1.48562 * 111.00089 * 54.57725 * 11 10 9 24 24 H 0.96998 * 120.00277 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47459 * 60.00371 * 9 7 2 26 26 H 1.09002 * 109.47267 * 300.00045 * 9 7 2 27 27 H 1.08996 * 109.47506 * 59.99492 * 10 9 7 28 28 H 1.09002 * 109.46775 * 299.99913 * 10 9 7 29 29 H 1.09001 * 110.41497 * 82.17879 * 12 11 10 30 30 H 1.09002 * 110.41353 * 319.73551 * 12 11 10 31 31 H 1.09005 * 109.46832 * 52.16735 * 15 13 12 32 32 H 1.08999 * 109.47420 * 172.16978 * 15 13 12 33 33 H 1.00904 * 111.00366 * 180.02562 * 16 15 13 34 34 H 1.00907 * 110.99567 * 303.94984 * 16 15 13 35 35 H 1.09000 * 110.41073 * 277.82090 * 23 11 10 36 36 H 1.09000 * 110.41044 * 40.14553 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 2.4275 -6.0781 -0.2420 13 6 1.5097 -7.2130 -0.7452 14 1 2.0137 -7.7927 -1.5185 15 6 1.1012 -8.1207 0.4167 16 7 2.2781 -8.8528 0.9034 17 6 0.2738 -6.4991 -1.3304 18 1 -0.6253 -6.7944 -0.7896 19 6 0.1296 -6.8210 -2.8192 20 9 -0.0196 -8.2021 -2.9854 21 9 -0.9956 -6.1660 -3.3312 22 9 1.2718 -6.3899 -3.5023 23 6 0.5488 -4.9931 -1.1317 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8893 28 1 2.8719 -3.6042 -0.8906 29 1 2.9214 -6.3712 0.6844 30 1 3.1652 -5.8207 -1.0021 31 1 0.6909 -7.5145 1.2244 32 1 0.3473 -8.8302 0.0759 33 1 2.0341 -9.4602 1.6714 34 1 2.7150 -9.3723 0.1567 35 1 -0.3719 -4.4691 -0.8751 36 1 0.9917 -4.5638 -2.0304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720871986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:49 Heat of formation + Delta-G solvation = -183.656945 kcal Electronic energy + Delta-G solvation = -21281.577760 eV Core-core repulsion = 17576.938945 eV Total energy + Delta-G solvation = -3704.638815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.19289 -48.67171 -48.65573 -40.46474 -36.49754 -35.06120 -33.63343 -31.21149 -29.81625 -27.02640 -26.36988 -24.44478 -23.12269 -21.55625 -21.27429 -19.51292 -19.22035 -18.87589 -18.34223 -17.05692 -16.59163 -16.21725 -16.02772 -15.58244 -15.54111 -15.24424 -15.14787 -15.09421 -14.97158 -14.79201 -14.69403 -14.39383 -13.93277 -13.50720 -13.23305 -12.86589 -12.75384 -12.59302 -12.51132 -12.40842 -12.18087 -11.88593 -11.72885 -11.31352 -11.21530 -10.56144 -9.52625 -9.45136 -8.20561 -6.31500 1.40540 1.40743 1.54027 1.64572 2.40382 2.63788 2.77562 2.90563 3.13355 3.25496 3.42630 3.61267 3.84020 3.92285 4.16064 4.21669 4.38348 4.43730 4.50286 4.66530 4.70420 4.80848 4.84431 5.00906 5.09572 5.16545 5.44256 5.59656 5.76902 5.88143 6.06536 6.27419 6.28639 6.68185 6.85054 7.37723 8.91642 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.023621 B = 0.005030 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.101489 B = 5565.649052 C = 6303.112660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.068 3.932 11 N -0.510 5.510 12 C 0.043 3.957 13 C -0.072 4.072 14 H 0.091 0.909 15 C 0.080 3.920 16 N -0.854 5.854 17 C -0.129 4.129 18 H 0.143 0.857 19 C 0.460 3.540 20 F -0.177 7.177 21 F -0.188 7.188 22 F -0.189 7.189 23 C 0.043 3.957 24 H 0.264 0.736 25 H -0.003 1.003 26 H -0.004 1.004 27 H 0.069 0.931 28 H 0.023 0.977 29 H 0.101 0.899 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.354 0.646 34 H 0.347 0.653 35 H 0.081 0.919 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -19.466 -2.723 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.060 4.060 11 N -0.234 5.234 12 C -0.085 4.085 13 C -0.092 4.092 14 H 0.110 0.890 15 C -0.051 4.051 16 N -0.386 5.386 17 C -0.150 4.150 18 H 0.161 0.839 19 C 0.406 3.594 20 F -0.159 7.159 21 F -0.169 7.169 22 F -0.170 7.170 23 C -0.085 4.085 24 H 0.073 0.927 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.119 0.881 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.099 0.901 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.433 -18.681 -2.046 18.847 hybrid contribution -0.055 0.442 -1.475 1.541 sum 1.378 -18.239 -3.521 18.627 Atomic orbital electron populations 1.70101 1.07752 1.27724 1.51496 1.25929 0.95733 1.03226 0.94614 0.85405 0.79079 0.78805 0.77790 1.18625 1.20443 1.20264 1.21643 0.93524 0.92296 1.50818 0.92256 1.18977 0.94207 0.92001 0.95309 1.22167 0.95852 0.88516 0.99474 1.65484 1.14791 1.03325 1.39812 1.23196 0.94270 0.89622 1.01399 1.21872 0.92716 0.96151 0.98445 0.89044 1.21671 0.91905 0.95517 0.96003 1.58577 1.29463 1.36149 1.14400 1.23298 1.04814 0.98058 0.88801 0.83883 1.20529 0.73241 0.74182 0.91456 1.93176 1.95448 1.30738 1.96521 1.93190 1.53049 1.81353 1.89313 1.93167 1.51461 1.89734 1.82671 1.22965 0.98584 0.93089 0.93908 0.92744 0.98507 0.98543 0.91272 0.95920 0.88081 0.94441 0.90789 0.93676 0.83201 0.84033 0.90069 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.72 4.69 29.85 0.14 1.86 16 10 C 0.07 2.88 5.00 86.30 0.43 3.31 16 11 N -0.51 -17.96 5.49 -881.51 -4.84 -22.80 16 12 C 0.04 1.19 5.97 86.45 0.52 1.70 16 13 C -0.07 -1.56 2.52 -9.90 -0.02 -1.59 16 14 H 0.09 1.79 7.39 -2.39 -0.02 1.77 16 15 C 0.08 1.41 5.91 86.30 0.51 1.92 16 16 N -0.85 -12.90 9.14 -186.72 -1.71 -14.61 16 17 C -0.13 -3.13 2.73 -9.90 -0.03 -3.16 16 18 H 0.14 2.91 7.71 -2.39 -0.02 2.89 16 19 C 0.46 11.41 2.53 71.98 0.18 11.60 16 20 F -0.18 -3.90 16.92 44.97 0.76 -3.14 16 21 F -0.19 -5.17 17.17 44.97 0.77 -4.40 16 22 F -0.19 -5.24 16.05 44.97 0.72 -4.52 16 23 C 0.04 1.44 4.44 86.45 0.38 1.82 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.00 -0.19 6.84 -2.39 -0.02 -0.21 16 26 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.02 0.96 7.88 -2.39 -0.02 0.94 16 29 H 0.10 2.77 7.50 -2.39 -0.02 2.76 16 30 H 0.04 1.08 7.82 -2.39 -0.02 1.06 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.35 4.11 9.08 -89.69 -0.81 3.30 16 34 H 0.35 4.26 8.99 -89.69 -0.81 3.46 16 35 H 0.08 2.98 7.67 -2.39 -0.02 2.96 16 36 H 0.04 1.43 7.07 -2.39 -0.02 1.42 16 Total: -1.00 -64.37 303.83 0.32 -64.05 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -0.51 Total: 8.29 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 2.81 Total: -12.88 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -6.26 Total: -93.95 kcal Atomic # 9 Polarization: -14.31 SS G_CDS: 2.25 Total: -12.05 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.37 0.32 -64.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720871986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.604 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds