Wall clock time and date at job start Mon Mar 30 2020 05:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.47331 * 303.59277 * 3 2 1 5 5 C 1.50704 * 109.46992 * 183.59286 * 3 2 1 6 6 H 1.08001 * 119.99992 * 240.00002 * 5 3 2 7 7 C 1.37877 * 119.99739 * 60.00495 * 5 3 2 8 8 N 1.31511 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99907 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46826 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47182 * 119.99583 * 9 7 5 12 12 H 1.48497 * 109.47400 * 240.00000 * 9 7 5 13 13 N 1.46901 * 109.47011 * 63.59611 * 3 2 1 14 14 C 1.48560 * 110.99950 * 64.76888 * 13 3 2 15 15 C 1.54386 * 104.59434 * 159.04175 * 14 13 3 16 16 H 1.08996 * 110.41279 * 95.08432 * 15 14 13 17 17 C 1.52999 * 110.32145 * 217.25021 * 15 14 13 18 18 F 1.39903 * 109.46724 * 175.63316 * 17 15 14 19 19 F 1.39894 * 109.47281 * 295.63396 * 17 15 14 20 20 F 1.39904 * 109.47350 * 55.63628 * 17 15 14 21 21 C 1.54259 * 105.05759 * 336.14334 * 15 14 13 22 22 H 1.08996 * 110.32743 * 241.00110 * 21 15 14 23 23 N 1.46900 * 110.32032 * 118.89709 * 21 15 14 24 24 C 1.48558 * 110.99983 * 180.18665 * 13 3 2 25 25 H 1.08996 * 109.47865 * 54.77253 * 1 2 3 26 26 H 1.09001 * 109.47033 * 174.77893 * 1 2 3 27 27 H 1.09008 * 109.46883 * 294.77640 * 1 2 3 28 28 H 1.09002 * 109.46607 * 240.00755 * 2 1 3 29 29 H 1.08997 * 109.47451 * 120.00155 * 2 1 3 30 30 H 0.97000 * 119.99997 * 180.02562 * 8 7 5 31 31 H 1.08990 * 110.41267 * 40.26060 * 14 13 3 32 32 H 1.09006 * 110.40979 * 277.81983 * 14 13 3 33 33 H 1.00903 * 111.00161 * 179.97438 * 23 21 15 34 34 H 1.00903 * 111.00121 * 303.95266 * 23 21 15 35 35 H 1.09005 * 110.41121 * 82.18298 * 24 13 3 36 36 H 1.08998 * 110.51138 * 319.78762 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6250 1.9746 -0.8560 5 6 3.5443 1.4435 -0.0890 6 1 4.1315 1.8944 0.6972 7 6 4.1710 0.8687 -1.1744 8 7 3.4559 0.3192 -2.1316 9 14 6.0357 0.8705 -1.2851 10 1 6.6018 1.5462 -0.0901 11 1 6.5295 -0.5288 -1.3435 12 1 6.4582 1.5959 -2.5100 13 7 1.6225 2.1095 1.2405 14 6 2.2622 1.4803 2.4245 15 6 2.1862 2.5587 3.5267 16 1 1.3058 2.4036 4.1502 17 6 3.4539 2.5334 4.3831 18 9 3.4107 3.5797 5.3108 19 9 3.5346 1.3122 5.0608 20 9 4.5754 2.6854 3.5607 21 6 2.0776 3.8984 2.7698 22 1 2.9263 4.5388 3.0098 23 7 0.8179 4.5744 3.1076 24 6 2.0970 3.5168 1.2740 25 1 -0.3635 0.5927 -0.8394 26 1 -0.3633 -1.0234 -0.0935 27 1 -0.3633 0.4307 0.9332 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8968 -0.0855 -2.8949 31 1 3.3008 1.2308 2.2077 32 1 1.7112 0.5893 2.7258 33 1 0.7364 5.4529 2.6179 34 1 0.0257 3.9792 2.9173 35 1 1.4216 4.1593 0.7090 36 1 3.1094 3.5880 0.8767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720878585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:12 Heat of formation + Delta-G solvation = -155.399849 kcal Electronic energy + Delta-G solvation = -22229.194081 eV Core-core repulsion = 18525.780585 eV Total energy + Delta-G solvation = -3703.413496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.82224 -47.31832 -47.26682 -38.95329 -35.13680 -32.35898 -31.42425 -30.50273 -27.04291 -26.32978 -24.54761 -22.98677 -21.34185 -20.25242 -19.22007 -18.15668 -17.93397 -17.42788 -16.59321 -15.27159 -14.99161 -14.79833 -14.21070 -14.10598 -14.02585 -13.81411 -13.69557 -13.45402 -13.40745 -13.01676 -12.79686 -12.47191 -12.02491 -11.87397 -11.37616 -11.29166 -11.16470 -10.99619 -10.76350 -10.65260 -10.62406 -10.05548 -9.79851 -9.66226 -9.24942 -8.50723 -8.45430 -7.46070 -6.09104 -4.21828 3.03359 3.21477 3.30896 3.35455 4.03750 4.18490 4.31469 4.34019 4.75241 4.96671 5.11108 5.17373 5.23435 5.40599 5.66318 5.78743 6.19502 6.25463 6.32994 6.37772 6.51494 6.54202 6.58118 6.90499 7.04777 7.13515 7.25082 7.44464 7.57016 7.63795 7.75354 7.99320 8.02568 8.29703 8.86504 9.46213 10.91300 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.008299 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.938118 B = 3372.893105 C = 4068.979189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.203 3.797 4 H 0.042 0.958 5 C -0.548 4.548 6 H 0.062 0.938 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.885 3.115 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.500 5.500 14 C 0.039 3.961 15 C -0.137 4.137 16 H 0.120 0.880 17 C 0.457 3.543 18 F -0.186 7.186 19 F -0.186 7.186 20 F -0.179 7.179 21 C 0.096 3.904 22 H 0.085 0.915 23 N -0.837 5.837 24 C 0.002 3.998 25 H 0.040 0.960 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.342 0.658 34 H 0.347 0.653 35 H 0.069 0.931 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 4.538 9.115 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.097 3.903 4 H 0.060 0.940 5 C -0.587 4.587 6 H 0.080 0.920 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.713 3.287 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.224 5.224 14 C -0.089 4.089 15 C -0.157 4.157 16 H 0.138 0.862 17 C 0.402 3.598 18 F -0.167 7.167 19 F -0.167 7.167 20 F -0.160 7.160 21 C -0.016 4.016 22 H 0.103 0.897 23 N -0.366 5.366 24 C -0.128 4.128 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.088 0.912 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.725 4.417 9.703 11.293 hybrid contribution 2.016 -0.171 -1.110 2.308 sum -1.708 4.246 8.593 9.736 Atomic orbital electron populations 1.21705 0.98745 0.98554 1.00466 1.21583 0.92263 0.98909 1.02202 1.19435 0.93272 0.91340 0.86298 0.94037 1.21722 0.92457 1.38245 1.06289 0.92027 1.24887 0.98008 0.94802 0.95503 1.69876 1.34957 1.37577 1.09629 0.86642 0.86076 0.77895 0.78128 1.19667 1.20894 1.20965 1.65851 1.51907 1.00782 1.03877 1.23089 1.01616 0.94956 0.89288 1.23342 0.94106 0.99988 0.98296 0.86199 1.20562 0.86936 0.73130 0.79169 1.93165 1.96770 1.58620 1.68165 1.93158 1.96859 1.45152 1.81572 1.93205 1.55462 1.95299 1.72031 1.22096 0.93671 0.92420 0.93456 0.89724 1.58965 1.03901 1.08510 1.65204 1.23834 1.01408 0.92876 0.94733 0.94128 0.95459 0.93639 0.88831 0.94916 0.92838 0.90567 0.90122 0.84520 0.83945 0.91227 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.72 37.16 0.36 -2.28 16 2 C -0.11 -2.50 5.15 -26.73 -0.14 -2.64 16 3 C 0.20 4.68 1.85 -68.86 -0.13 4.56 16 4 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 5 C -0.55 -13.89 6.51 -34.44 -0.22 -14.11 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -23.97 11.30 55.43 0.63 -23.34 16 9 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.50 -9.55 4.89 -223.40 -1.09 -10.64 16 14 C 0.04 0.71 4.64 -2.18 -0.01 0.70 16 15 C -0.14 -2.09 2.82 -89.23 -0.25 -2.34 16 16 H 0.12 1.67 7.94 -51.93 -0.41 1.26 16 17 C 0.46 7.23 2.53 37.16 0.09 7.33 16 18 F -0.19 -2.86 16.92 2.25 0.04 -2.82 16 19 F -0.19 -2.96 17.17 2.25 0.04 -2.92 16 20 F -0.18 -3.17 16.05 2.25 0.04 -3.14 16 21 C 0.10 1.42 3.48 -66.33 -0.23 1.19 16 22 H 0.08 1.27 7.39 -51.93 -0.38 0.89 16 23 N -0.84 -10.38 9.16 -3.50 -0.03 -10.41 16 24 C 0.00 0.03 5.98 -2.18 -0.01 0.02 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.82 7.86 -51.92 -0.41 0.41 16 28 H 0.09 2.38 5.98 -51.93 -0.31 2.07 16 29 H 0.03 0.72 6.90 -51.93 -0.36 0.36 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.08 1.59 4.94 -51.93 -0.26 1.33 16 32 H 0.08 1.41 7.61 -51.93 -0.40 1.02 16 33 H 0.34 3.68 9.08 -39.29 -0.36 3.32 16 34 H 0.35 4.23 8.98 -39.29 -0.35 3.88 16 35 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 36 H 0.07 1.36 6.26 -51.93 -0.33 1.04 16 LS Contribution 293.74 15.07 4.43 4.43 Total: -1.00 -25.98 293.74 -6.29 -32.27 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.68 Total: 6.69 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.63 Total: -5.80 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.50 Total: -44.40 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 0.11 Total: -8.88 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.98 -6.29 -32.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720878585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.126 kcal (2) G-P(sol) polarization free energy of solvation -25.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds