Wall clock time and date at job start Mon Mar 30 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.47331 * 303.59277 * 3 2 1 5 5 C 1.50704 * 109.46992 * 183.59286 * 3 2 1 6 6 H 1.08001 * 119.99992 * 240.00002 * 5 3 2 7 7 C 1.37877 * 119.99739 * 60.00495 * 5 3 2 8 8 N 1.31511 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99907 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46826 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47182 * 119.99583 * 9 7 5 12 12 H 1.48497 * 109.47400 * 240.00000 * 9 7 5 13 13 N 1.46901 * 109.47011 * 63.59611 * 3 2 1 14 14 C 1.48560 * 110.99950 * 64.76888 * 13 3 2 15 15 C 1.54386 * 104.59434 * 159.04175 * 14 13 3 16 16 H 1.08996 * 110.41279 * 95.08432 * 15 14 13 17 17 C 1.52999 * 110.32145 * 217.25021 * 15 14 13 18 18 F 1.39903 * 109.46724 * 175.63316 * 17 15 14 19 19 F 1.39894 * 109.47281 * 295.63396 * 17 15 14 20 20 F 1.39904 * 109.47350 * 55.63628 * 17 15 14 21 21 C 1.54259 * 105.05759 * 336.14334 * 15 14 13 22 22 H 1.08996 * 110.32743 * 241.00110 * 21 15 14 23 23 N 1.46900 * 110.32032 * 118.89709 * 21 15 14 24 24 C 1.48558 * 110.99983 * 180.18665 * 13 3 2 25 25 H 1.08996 * 109.47865 * 54.77253 * 1 2 3 26 26 H 1.09001 * 109.47033 * 174.77893 * 1 2 3 27 27 H 1.09008 * 109.46883 * 294.77640 * 1 2 3 28 28 H 1.09002 * 109.46607 * 240.00755 * 2 1 3 29 29 H 1.08997 * 109.47451 * 120.00155 * 2 1 3 30 30 H 0.97000 * 119.99997 * 180.02562 * 8 7 5 31 31 H 1.08990 * 110.41267 * 40.26060 * 14 13 3 32 32 H 1.09006 * 110.40979 * 277.81983 * 14 13 3 33 33 H 1.00903 * 111.00161 * 179.97438 * 23 21 15 34 34 H 1.00903 * 111.00121 * 303.95266 * 23 21 15 35 35 H 1.09005 * 110.41121 * 82.18298 * 24 13 3 36 36 H 1.08998 * 110.51138 * 319.78762 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6250 1.9746 -0.8560 5 6 3.5443 1.4435 -0.0890 6 1 4.1315 1.8944 0.6972 7 6 4.1710 0.8687 -1.1744 8 7 3.4559 0.3192 -2.1316 9 14 6.0357 0.8705 -1.2851 10 1 6.6018 1.5462 -0.0901 11 1 6.5295 -0.5288 -1.3435 12 1 6.4582 1.5959 -2.5100 13 7 1.6225 2.1095 1.2405 14 6 2.2622 1.4803 2.4245 15 6 2.1862 2.5587 3.5267 16 1 1.3058 2.4036 4.1502 17 6 3.4539 2.5334 4.3831 18 9 3.4107 3.5797 5.3108 19 9 3.5346 1.3122 5.0608 20 9 4.5754 2.6854 3.5607 21 6 2.0776 3.8984 2.7698 22 1 2.9263 4.5388 3.0098 23 7 0.8179 4.5744 3.1076 24 6 2.0970 3.5168 1.2740 25 1 -0.3635 0.5927 -0.8394 26 1 -0.3633 -1.0234 -0.0935 27 1 -0.3633 0.4307 0.9332 28 1 1.8932 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8968 -0.0855 -2.8949 31 1 3.3008 1.2308 2.2077 32 1 1.7112 0.5893 2.7258 33 1 0.7364 5.4529 2.6179 34 1 0.0257 3.9792 2.9173 35 1 1.4216 4.1593 0.7090 36 1 3.1094 3.5880 0.8767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720878585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:11 Heat of formation + Delta-G solvation = -173.096379 kcal Electronic energy + Delta-G solvation = -22229.961460 eV Core-core repulsion = 18525.780585 eV Total energy + Delta-G solvation = -3704.180875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.11233 -48.60014 -48.57043 -40.42410 -36.74542 -34.07760 -32.94793 -31.96536 -28.67261 -27.85952 -26.08502 -24.60812 -22.85703 -21.58278 -20.92979 -19.46327 -19.24597 -18.76946 -18.44284 -16.93517 -16.36373 -16.11040 -15.73905 -15.46533 -15.41195 -15.30303 -15.00498 -14.84426 -14.76108 -14.66826 -14.33171 -13.96266 -13.56333 -13.44962 -13.04073 -12.88772 -12.75493 -12.49723 -12.45633 -12.24598 -12.03089 -11.92886 -11.59223 -11.41945 -11.05922 -10.45741 -9.63877 -9.15944 -8.08240 -6.27169 1.32823 1.37943 1.46526 1.75373 2.37703 2.75503 2.90381 3.02762 3.13122 3.53564 3.55619 3.74655 3.98137 4.13802 4.35033 4.47870 4.56095 4.72853 4.82562 4.91766 4.92961 5.02082 5.05205 5.19522 5.41264 5.43679 5.60076 5.74930 5.95199 6.09852 6.18109 6.24326 6.40288 6.63722 6.91368 7.42810 8.88965 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.008299 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.938118 B = 3372.893105 C = 4068.979189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.211 3.789 4 H 0.009 0.991 5 C -0.549 4.549 6 H 0.054 0.946 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 0.937 3.063 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.491 5.491 14 C 0.040 3.960 15 C -0.126 4.126 16 H 0.144 0.856 17 C 0.459 3.541 18 F -0.180 7.180 19 F -0.186 7.186 20 F -0.193 7.193 21 C 0.110 3.890 22 H 0.086 0.914 23 N -0.826 5.826 24 C 0.002 3.998 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.354 0.646 34 H 0.353 0.647 35 H 0.080 0.920 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 5.125 10.570 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.103 3.897 4 H 0.027 0.973 5 C -0.588 4.588 6 H 0.072 0.928 7 C -0.174 4.174 8 N -0.546 5.546 9 Si 0.764 3.236 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.214 5.214 14 C -0.089 4.089 15 C -0.146 4.146 16 H 0.162 0.838 17 C 0.404 3.596 18 F -0.161 7.161 19 F -0.167 7.167 20 F -0.174 7.174 21 C -0.004 4.004 22 H 0.104 0.896 23 N -0.357 5.357 24 C -0.129 4.129 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.520 5.022 11.170 13.054 hybrid contribution 2.249 -0.320 -1.532 2.741 sum -2.270 4.702 9.637 10.961 Atomic orbital electron populations 1.21567 0.95990 0.99708 1.00977 1.21429 0.94674 0.97944 1.00482 1.19173 0.91773 0.91714 0.87028 0.97273 1.21962 0.93882 1.37225 1.05711 0.92776 1.25509 1.01280 0.95045 0.95612 1.69987 1.36083 1.38505 1.10063 0.85831 0.82250 0.77718 0.77838 1.19852 1.20732 1.20717 1.65763 1.51529 1.01452 1.02691 1.23021 0.99817 0.96283 0.89731 1.23276 0.94709 0.99043 0.97599 0.83850 1.20589 0.86570 0.73241 0.79176 1.93177 1.96705 1.58330 1.67889 1.93161 1.96833 1.45179 1.81534 1.93184 1.56321 1.95381 1.72540 1.21904 0.95052 0.92365 0.91050 0.89613 1.58947 1.02899 1.08883 1.64953 1.23890 0.99788 0.92118 0.97094 0.94741 0.93780 0.92100 0.92036 0.95053 0.92947 0.93484 0.89289 0.83130 0.83354 0.90193 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.72 71.98 0.70 -3.94 16 2 C -0.11 -4.81 5.15 30.59 0.16 -4.65 16 3 C 0.21 9.82 1.85 44.17 0.08 9.90 16 4 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 5 C -0.55 -28.31 6.51 25.60 0.17 -28.14 16 6 H 0.05 2.84 5.68 -2.91 -0.02 2.82 16 7 C 0.03 1.38 5.30 84.66 0.45 1.83 16 8 N -0.91 -50.34 11.30 21.45 0.24 -50.10 16 9 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 N -0.49 -18.36 4.89 -860.70 -4.21 -22.57 16 14 C 0.04 1.40 4.64 86.45 0.40 1.81 16 15 C -0.13 -3.56 2.82 -9.90 -0.03 -3.58 16 16 H 0.14 3.45 7.94 -2.39 -0.02 3.43 16 17 C 0.46 13.69 2.53 71.98 0.18 13.88 16 18 F -0.18 -5.09 16.92 44.97 0.76 -4.33 16 19 F -0.19 -5.57 17.17 44.97 0.77 -4.80 16 20 F -0.19 -6.71 16.05 44.97 0.72 -5.98 16 21 C 0.11 3.00 3.48 45.81 0.16 3.16 16 22 H 0.09 2.40 7.39 -2.39 -0.02 2.38 16 23 N -0.83 -17.85 9.16 -164.97 -1.51 -19.36 16 24 C 0.00 0.06 5.98 86.45 0.52 0.58 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 2.06 7.86 -2.38 -0.02 2.04 16 28 H 0.06 3.19 5.98 -2.39 -0.01 3.18 16 29 H 0.03 1.38 6.90 -2.39 -0.02 1.36 16 30 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.05 1.95 4.94 -2.39 -0.01 1.94 16 32 H 0.09 2.95 7.61 -2.38 -0.02 2.94 16 33 H 0.35 6.49 9.08 -89.69 -0.81 5.67 16 34 H 0.35 7.33 8.98 -89.69 -0.81 6.52 16 35 H 0.08 2.53 8.06 -2.38 -0.02 2.52 16 36 H 0.04 1.51 6.26 -2.39 -0.01 1.50 16 Total: -1.00 -55.64 293.74 1.10 -54.54 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.49 Total: 16.63 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 2.79 Total: -9.17 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -5.48 Total: -92.03 kcal Atomic # 9 Polarization: -17.36 SS G_CDS: 2.25 Total: -15.11 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -55.64 1.10 -54.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720878585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.554 kcal (2) G-P(sol) polarization free energy of solvation -55.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds