Wall clock time and date at job start Mon Mar 30 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47337 * 2 1 4 4 H 1.09000 * 109.47437 * 302.88211 * 3 2 1 5 5 C 1.50710 * 109.47430 * 182.88423 * 3 2 1 6 6 H 1.07998 * 119.99608 * 240.00098 * 5 3 2 7 7 C 1.37879 * 119.99437 * 60.00115 * 5 3 2 8 8 N 1.31512 * 120.00254 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99522 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47031 * 59.99697 * 9 7 5 11 11 H 1.48495 * 109.46884 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46972 * 299.99873 * 9 7 5 13 13 N 1.46897 * 109.47188 * 62.88512 * 3 2 1 14 14 C 1.47895 * 111.00177 * 60.30013 * 13 3 2 15 15 C 1.53996 * 107.06294 * 145.84399 * 14 13 3 16 16 H 1.09000 * 110.30890 * 239.85819 * 15 14 13 17 17 N 1.46905 * 110.30849 * 117.69084 * 15 14 13 18 18 C 1.54597 * 105.13603 * 358.77627 * 15 14 13 19 19 H 1.09001 * 110.72420 * 96.57900 * 18 15 14 20 20 C 1.53003 * 110.72188 * 219.68344 * 18 15 14 21 21 F 1.39891 * 109.47195 * 57.54783 * 20 18 15 22 22 F 1.39904 * 109.47067 * 297.54957 * 20 18 15 23 23 F 1.39899 * 109.46982 * 177.55141 * 20 18 15 24 24 C 1.48736 * 111.04558 * 177.87554 * 13 3 2 25 25 H 1.09001 * 109.46799 * 294.64280 * 1 2 3 26 26 H 1.08996 * 109.47588 * 54.64014 * 1 2 3 27 27 H 1.08998 * 109.47327 * 174.64797 * 1 2 3 28 28 H 1.09002 * 109.46483 * 240.00005 * 2 1 3 29 29 H 1.09003 * 109.47529 * 120.00293 * 2 1 3 30 30 H 0.96996 * 119.99904 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.92066 * 26.49118 * 14 13 3 32 32 H 1.09006 * 109.91663 * 265.19706 * 14 13 3 33 33 H 1.00897 * 111.00110 * 64.28392 * 17 15 14 34 34 H 1.00898 * 110.99819 * 188.24594 * 17 15 14 35 35 H 1.08999 * 110.83575 * 81.95884 * 24 13 3 36 36 H 1.09001 * 110.58212 * 318.77291 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6352 1.9710 -0.8630 5 6 3.5454 1.4430 -0.0715 6 1 4.1233 1.8973 0.7197 7 6 4.1846 0.8637 -1.1471 8 7 3.4808 0.3102 -2.1102 9 14 6.0506 0.8638 -1.2354 10 1 6.6018 0.1434 -0.0596 11 1 6.4871 0.1840 -2.4813 12 1 6.5460 2.2638 -1.2350 13 7 1.6081 2.1145 1.2327 14 6 2.1458 1.4277 2.4271 15 6 2.4285 2.5124 3.4831 16 1 3.4847 2.5120 3.7525 17 7 1.5973 2.2933 4.6743 18 6 2.0490 3.8474 2.8021 19 1 1.0375 4.1467 3.0768 20 6 3.0529 4.9441 3.1633 21 9 4.3386 4.5418 2.7863 22 9 3.0208 5.1694 4.5437 23 9 2.7172 6.1237 2.4903 24 6 2.1290 3.5064 1.2928 25 1 -0.3633 0.4285 0.9341 26 1 -0.3634 0.5947 -0.8380 27 1 -0.3634 -1.0231 -0.0959 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9305 -0.0970 -2.8671 31 1 3.0693 0.9079 2.1724 32 1 1.4112 0.7192 2.8102 33 1 1.8365 1.4240 5.1273 34 1 1.6734 3.0683 5.3159 35 1 1.5001 4.1811 0.7121 36 1 3.1609 3.5448 0.9439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720878587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:15 Heat of formation + Delta-G solvation = -154.276323 kcal Electronic energy + Delta-G solvation = -22103.778153 eV Core-core repulsion = 18400.413378 eV Total energy + Delta-G solvation = -3703.364776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.94187 -47.45785 -47.38652 -38.83543 -35.09864 -32.52230 -31.62584 -30.08202 -27.36195 -26.20920 -24.58527 -22.84907 -21.20393 -20.43608 -19.07997 -18.34856 -18.02050 -17.13722 -16.65472 -15.30889 -15.22707 -14.86744 -14.34571 -14.28275 -14.10270 -13.87371 -13.70964 -13.55835 -13.42364 -13.18107 -12.69131 -12.56564 -12.13581 -11.57518 -11.38421 -11.22229 -10.99585 -10.86300 -10.84800 -10.70342 -10.46237 -10.06761 -9.73105 -9.57359 -9.15865 -8.65505 -8.41495 -7.32465 -6.05561 -4.18907 2.92789 3.24755 3.30260 3.33290 3.95835 4.09599 4.23424 4.34861 4.64339 4.87736 5.11040 5.16191 5.20342 5.43332 5.73308 5.83958 6.25410 6.34446 6.41078 6.45174 6.55624 6.60522 6.65701 7.00230 7.13814 7.20558 7.24022 7.46773 7.53578 7.67949 7.84561 8.04636 8.10454 8.34860 8.89513 9.48587 10.94228 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.007975 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.415183 B = 3509.998242 C = 4337.213153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.204 3.796 4 H 0.043 0.957 5 C -0.549 4.549 6 H 0.057 0.943 7 C 0.072 3.928 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.503 5.503 14 C 0.051 3.949 15 C 0.088 3.912 16 H 0.045 0.955 17 N -0.836 5.836 18 C -0.139 4.139 19 H 0.127 0.873 20 C 0.454 3.546 21 F -0.179 7.179 22 F -0.191 7.191 23 F -0.183 7.183 24 C 0.047 3.953 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.025 0.975 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.344 0.656 34 H 0.337 0.663 35 H 0.081 0.919 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 5.120 10.350 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.097 3.903 4 H 0.061 0.939 5 C -0.588 4.588 6 H 0.076 0.924 7 C -0.131 4.131 8 N -0.520 5.520 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.227 5.227 14 C -0.078 4.078 15 C -0.024 4.024 16 H 0.063 0.937 17 N -0.366 5.366 18 C -0.159 4.159 19 H 0.145 0.855 20 C 0.399 3.601 21 F -0.161 7.161 22 F -0.173 7.173 23 F -0.165 7.165 24 C -0.081 4.081 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.364 5.009 9.632 11.366 hybrid contribution 3.113 0.260 0.499 3.164 sum -0.251 5.269 10.131 11.422 Atomic orbital electron populations 1.21711 0.98679 0.98468 1.00698 1.21581 0.92342 0.98804 1.02108 1.19466 0.92895 0.91284 0.86629 0.93915 1.21647 0.92485 1.38132 1.06517 0.92450 1.24884 0.97938 0.94835 0.95484 1.69856 1.35151 1.37249 1.09703 0.86758 0.86137 0.78353 0.77417 1.20315 1.21179 1.20216 1.65230 1.53791 1.00085 1.03611 1.22789 1.00224 0.95230 0.89558 1.22220 0.94266 0.93910 0.92006 0.93728 1.58825 1.60126 1.07603 1.10084 1.23588 0.98509 0.92402 1.01412 0.85498 1.20709 0.82137 0.83352 0.73889 1.93189 1.41492 1.90365 1.91034 1.93132 1.96634 1.95391 1.32144 1.93167 1.92274 1.50758 1.80293 1.23157 1.01814 0.93602 0.89564 0.93435 0.94074 0.95558 0.88903 0.94917 0.92715 0.91491 0.90585 0.84305 0.85056 0.90091 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.71 37.16 0.36 -2.38 16 2 C -0.11 -2.51 5.07 -26.74 -0.14 -2.64 16 3 C 0.20 4.80 1.88 -68.86 -0.13 4.67 16 4 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 5 C -0.55 -13.99 6.34 -34.43 -0.22 -14.20 16 6 H 0.06 1.47 6.05 -52.49 -0.32 1.15 16 7 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 8 N -0.88 -24.04 11.30 55.43 0.63 -23.42 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.50 -10.10 4.78 -223.71 -1.07 -11.17 16 14 C 0.05 0.93 4.80 -2.76 -0.01 0.92 16 15 C 0.09 1.35 3.46 -66.35 -0.23 1.12 16 16 H 0.04 0.70 7.32 -51.93 -0.38 0.32 16 17 N -0.84 -10.53 9.13 -3.51 -0.03 -10.56 16 18 C -0.14 -2.13 2.73 -88.76 -0.24 -2.37 16 19 H 0.13 1.84 8.06 -51.93 -0.42 1.42 16 20 C 0.45 6.83 2.69 37.16 0.10 6.93 16 21 F -0.18 -3.03 15.78 2.25 0.04 -2.99 16 22 F -0.19 -2.66 16.90 2.25 0.04 -2.62 16 23 F -0.18 -2.79 17.17 2.25 0.04 -2.75 16 24 C 0.05 0.88 5.63 -1.79 -0.01 0.87 16 25 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 2.38 6.00 -51.93 -0.31 2.07 16 29 H 0.03 0.73 6.97 -51.93 -0.36 0.37 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.07 1.38 6.08 -51.93 -0.32 1.07 16 32 H 0.08 1.37 7.91 -51.93 -0.41 0.96 16 33 H 0.34 3.77 9.08 -39.29 -0.36 3.42 16 34 H 0.34 3.75 8.78 -39.29 -0.34 3.41 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.54 5.36 -51.93 -0.28 1.26 16 LS Contribution 293.87 15.07 4.43 4.43 Total: -1.00 -26.17 293.87 -6.30 -32.46 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.73 Total: 6.27 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -0.61 Total: -5.30 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.47 Total: -45.14 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 0.11 Total: -8.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.17 -6.30 -32.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720878587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.815 kcal (2) G-P(sol) polarization free energy of solvation -26.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds