Wall clock time and date at job start Mon Mar 30 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47337 * 2 1 4 4 H 1.09000 * 109.47437 * 302.88211 * 3 2 1 5 5 C 1.50710 * 109.47430 * 182.88423 * 3 2 1 6 6 H 1.07998 * 119.99608 * 240.00098 * 5 3 2 7 7 C 1.37879 * 119.99437 * 60.00115 * 5 3 2 8 8 N 1.31512 * 120.00254 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99522 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47031 * 59.99697 * 9 7 5 11 11 H 1.48495 * 109.46884 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46972 * 299.99873 * 9 7 5 13 13 N 1.46897 * 109.47188 * 62.88512 * 3 2 1 14 14 C 1.47895 * 111.00177 * 60.30013 * 13 3 2 15 15 C 1.53996 * 107.06294 * 145.84399 * 14 13 3 16 16 H 1.09000 * 110.30890 * 239.85819 * 15 14 13 17 17 N 1.46905 * 110.30849 * 117.69084 * 15 14 13 18 18 C 1.54597 * 105.13603 * 358.77627 * 15 14 13 19 19 H 1.09001 * 110.72420 * 96.57900 * 18 15 14 20 20 C 1.53003 * 110.72188 * 219.68344 * 18 15 14 21 21 F 1.39891 * 109.47195 * 57.54783 * 20 18 15 22 22 F 1.39904 * 109.47067 * 297.54957 * 20 18 15 23 23 F 1.39899 * 109.46982 * 177.55141 * 20 18 15 24 24 C 1.48736 * 111.04558 * 177.87554 * 13 3 2 25 25 H 1.09001 * 109.46799 * 294.64280 * 1 2 3 26 26 H 1.08996 * 109.47588 * 54.64014 * 1 2 3 27 27 H 1.08998 * 109.47327 * 174.64797 * 1 2 3 28 28 H 1.09002 * 109.46483 * 240.00005 * 2 1 3 29 29 H 1.09003 * 109.47529 * 120.00293 * 2 1 3 30 30 H 0.96996 * 119.99904 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.92066 * 26.49118 * 14 13 3 32 32 H 1.09006 * 109.91663 * 265.19706 * 14 13 3 33 33 H 1.00897 * 111.00110 * 64.28392 * 17 15 14 34 34 H 1.00898 * 110.99819 * 188.24594 * 17 15 14 35 35 H 1.08999 * 110.83575 * 81.95884 * 24 13 3 36 36 H 1.09001 * 110.58212 * 318.77291 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6352 1.9710 -0.8630 5 6 3.5454 1.4430 -0.0715 6 1 4.1233 1.8973 0.7197 7 6 4.1846 0.8637 -1.1471 8 7 3.4808 0.3102 -2.1102 9 14 6.0506 0.8638 -1.2354 10 1 6.6018 0.1434 -0.0596 11 1 6.4871 0.1840 -2.4813 12 1 6.5460 2.2638 -1.2350 13 7 1.6081 2.1145 1.2327 14 6 2.1458 1.4277 2.4271 15 6 2.4285 2.5124 3.4831 16 1 3.4847 2.5120 3.7525 17 7 1.5973 2.2933 4.6743 18 6 2.0490 3.8474 2.8021 19 1 1.0375 4.1467 3.0768 20 6 3.0529 4.9441 3.1633 21 9 4.3386 4.5418 2.7863 22 9 3.0208 5.1694 4.5437 23 9 2.7172 6.1237 2.4903 24 6 2.1290 3.5064 1.2928 25 1 -0.3633 0.4285 0.9341 26 1 -0.3634 0.5947 -0.8380 27 1 -0.3634 -1.0231 -0.0959 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.9305 -0.0970 -2.8671 31 1 3.0693 0.9079 2.1724 32 1 1.4112 0.7192 2.8102 33 1 1.8365 1.4240 5.1273 34 1 1.6734 3.0683 5.3159 35 1 1.5001 4.1811 0.7121 36 1 3.1609 3.5448 0.9439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720878587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:14 Heat of formation + Delta-G solvation = -172.011698 kcal Electronic energy + Delta-G solvation = -22104.547217 eV Core-core repulsion = 18400.413378 eV Total energy + Delta-G solvation = -3704.133839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.16724 -48.65705 -48.63622 -40.34711 -36.71026 -34.15862 -33.27822 -31.56024 -28.96909 -27.82365 -26.11495 -24.49160 -22.75296 -21.82303 -20.75152 -19.59599 -19.28200 -18.49131 -18.48488 -16.92736 -16.58662 -16.24780 -15.79589 -15.57623 -15.47175 -15.15343 -15.02489 -14.94881 -14.77795 -14.74678 -14.36706 -14.15544 -13.67949 -13.27033 -12.97785 -12.81724 -12.65915 -12.52793 -12.44512 -12.23737 -12.00660 -11.89245 -11.56796 -11.38426 -11.00125 -10.43070 -9.72905 -9.05391 -8.04915 -6.25210 1.37318 1.39347 1.45381 1.68340 2.39401 2.69834 2.83163 2.98603 3.15429 3.44872 3.55754 3.73899 3.79964 4.10529 4.40289 4.49754 4.59973 4.74566 4.83475 4.94213 4.97654 5.03939 5.07310 5.22695 5.44521 5.46823 5.61603 5.78708 6.01440 6.11044 6.17345 6.29324 6.46885 6.57523 6.93317 7.44555 8.91374 Molecular weight = 266.13amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.007975 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.415183 B = 3509.998242 C = 4337.213153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.211 3.789 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.053 0.947 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 0.939 3.061 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.502 5.502 14 C 0.054 3.946 15 C 0.098 3.902 16 H 0.043 0.957 17 N -0.830 5.830 18 C -0.126 4.126 19 H 0.145 0.855 20 C 0.460 3.540 21 F -0.191 7.191 22 F -0.180 7.180 23 F -0.183 7.183 24 C 0.044 3.956 25 H 0.057 0.943 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.356 0.644 34 H 0.350 0.650 35 H 0.086 0.914 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 5.543 12.104 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.103 3.897 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.071 0.929 7 C -0.174 4.174 8 N -0.546 5.546 9 Si 0.765 3.235 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.225 5.225 14 C -0.075 4.075 15 C -0.014 4.014 16 H 0.061 0.939 17 N -0.363 5.363 18 C -0.146 4.146 19 H 0.162 0.838 20 C 0.405 3.595 21 F -0.173 7.173 22 F -0.161 7.161 23 F -0.165 7.165 24 C -0.085 4.085 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.105 0.895 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.703 5.438 11.416 13.176 hybrid contribution 3.189 0.155 -0.012 3.193 sum -0.514 5.593 11.404 12.712 Atomic orbital electron populations 1.21571 0.96195 0.99660 1.00893 1.21421 0.94497 0.97831 1.00541 1.19213 0.91696 0.91645 0.87111 0.97338 1.21881 0.93704 1.37248 1.06079 0.92932 1.25531 1.01457 0.94966 0.95495 1.69978 1.36355 1.38150 1.10141 0.85913 0.82006 0.78136 0.77421 1.19870 1.20952 1.20247 1.65135 1.53690 1.00780 1.02916 1.22731 0.98987 0.96093 0.89702 1.21972 0.94645 0.92507 0.92312 0.93912 1.58726 1.59085 1.08862 1.09659 1.23461 0.99572 0.92696 0.98884 0.83760 1.20547 0.81418 0.83170 0.74338 1.93172 1.42360 1.90512 1.91236 1.93157 1.96531 1.95302 1.31114 1.93173 1.92199 1.50691 1.80397 1.23123 1.00300 0.92932 0.92145 0.92437 0.94729 0.93689 0.91901 0.94918 0.92892 0.94123 0.89919 0.82971 0.83596 0.89526 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.71 71.98 0.70 -4.17 16 2 C -0.10 -4.79 5.07 30.59 0.16 -4.64 16 3 C 0.21 10.09 1.88 44.17 0.08 10.17 16 4 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 5 C -0.55 -28.52 6.34 25.60 0.16 -28.36 16 6 H 0.05 2.73 6.05 -2.91 -0.02 2.71 16 7 C 0.03 1.39 5.30 84.66 0.45 1.84 16 8 N -0.91 -50.57 11.30 21.45 0.24 -50.33 16 9 Si 0.94 42.80 29.54 68.60 2.03 44.83 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.50 -19.92 4.78 -861.69 -4.12 -24.03 16 14 C 0.05 1.91 4.80 86.45 0.42 2.32 16 15 C 0.10 2.80 3.46 45.79 0.16 2.96 16 16 H 0.04 1.26 7.32 -2.39 -0.02 1.25 16 17 N -0.83 -18.29 9.13 -165.02 -1.51 -19.80 16 18 C -0.13 -3.61 2.73 -9.59 -0.03 -3.64 16 19 H 0.14 3.72 8.06 -2.39 -0.02 3.70 16 20 C 0.46 12.92 2.69 71.98 0.19 13.12 16 21 F -0.19 -6.23 15.78 44.97 0.71 -5.52 16 22 F -0.18 -4.47 16.90 44.97 0.76 -3.71 16 23 F -0.18 -5.23 17.17 44.97 0.77 -4.46 16 24 C 0.04 1.60 5.63 86.61 0.49 2.08 16 25 H 0.06 2.09 7.85 -2.39 -0.02 2.07 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 3.29 6.00 -2.39 -0.01 3.27 16 29 H 0.03 1.46 6.97 -2.39 -0.02 1.44 16 30 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.04 1.67 6.08 -2.39 -0.01 1.66 16 32 H 0.08 2.82 7.91 -2.38 -0.02 2.80 16 33 H 0.36 6.68 9.08 -89.70 -0.81 5.87 16 34 H 0.35 6.51 8.78 -89.70 -0.79 5.72 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.05 2.04 5.36 -2.39 -0.01 2.02 16 Total: -1.00 -55.81 293.87 1.19 -54.62 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -0.48 Total: 16.70 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 2.78 Total: -8.31 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -5.38 Total: -94.16 kcal Atomic # 9 Polarization: -15.92 SS G_CDS: 2.24 Total: -13.68 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -55.81 1.19 -54.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720878587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.391 kcal (2) G-P(sol) polarization free energy of solvation -55.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds