Wall clock time and date at job start Mon Mar 30 2020 04:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53236 * 108.53353 * 231.61797 * 3 2 1 5 5 C 1.52954 * 109.40515 * 305.37271 * 4 3 2 6 6 C 1.52998 * 109.41554 * 183.70552 * 5 4 3 7 7 N 1.46495 * 109.47262 * 64.64504 * 6 5 4 8 8 C 1.34776 * 120.00353 * 180.02562 * 7 6 5 9 9 O 1.21438 * 119.99870 * 359.97438 * 8 7 6 10 10 C 1.48836 * 120.00406 * 180.02562 * 8 7 6 11 11 O 1.21503 * 119.99630 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99895 * 179.97438 * 10 8 7 13 13 C 1.36120 * 119.99692 * 179.97438 * 12 10 8 14 14 H 1.08003 * 120.00442 * 0.02562 * 13 12 10 15 15 C 1.39590 * 120.00211 * 179.97438 * 13 12 10 16 16 N 1.31012 * 119.99694 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00295 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47216 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47097 * 120.00120 * 17 15 13 20 20 H 1.48498 * 109.47477 * 240.00846 * 17 15 13 21 21 C 1.52962 * 109.81860 * 63.59882 * 5 4 3 22 22 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 23 23 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 24 24 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 25 25 H 1.08996 * 109.62853 * 351.32771 * 3 2 1 26 26 H 1.08994 * 109.62831 * 111.90784 * 3 2 1 27 27 H 1.09002 * 109.48366 * 185.39419 * 4 3 2 28 28 H 1.09001 * 109.48205 * 65.35438 * 4 3 2 29 29 H 1.09007 * 109.41410 * 303.49063 * 5 4 3 30 30 H 1.09004 * 109.47531 * 184.64460 * 6 5 4 31 31 H 1.09004 * 109.46854 * 304.64828 * 6 5 4 32 32 H 0.97005 * 120.00280 * 0.02562 * 7 6 5 33 33 H 0.96997 * 120.00480 * 0.02562 * 12 10 8 34 34 H 0.96998 * 120.00329 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.48320 * 176.42559 * 21 5 4 36 36 H 1.08997 * 109.49150 * 56.38933 * 21 5 4 37 37 H 1.08997 * 109.62461 * 248.09547 * 22 2 1 38 38 H 1.08996 * 109.62473 * 8.47434 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1099 1.2542 -1.1389 5 6 3.9767 0.0023 -0.9943 6 6 5.0584 0.0048 -2.0764 7 7 5.9614 1.1381 -1.8615 8 6 6.9974 1.3426 -2.6991 9 8 7.1825 0.5870 -3.6316 10 6 7.9152 2.4936 -2.4804 11 8 7.7303 3.2493 -1.5471 12 7 8.9514 2.6977 -3.3177 13 6 9.7905 3.7507 -3.1180 14 1 9.6262 4.4225 -2.2884 15 6 10.8641 3.9619 -3.9849 16 7 11.0638 3.1468 -4.9909 17 14 12.0160 5.4065 -3.7105 18 1 11.5768 6.1697 -2.5147 19 1 13.3972 4.9046 -3.4969 20 1 11.9901 6.2935 -4.9011 21 6 3.1098 -1.2489 -1.1449 22 6 2.0857 -1.2987 -0.0062 23 1 -0.5400 -0.9354 -0.0046 24 1 -0.5399 0.9352 0.0045 25 1 1.4021 2.1334 -0.1548 26 1 2.6023 1.4165 0.9525 27 1 3.7420 2.1411 -1.0942 28 1 2.5886 1.2269 -2.0958 29 1 4.4488 -0.0001 -0.0117 30 1 5.6245 -0.9254 -2.0265 31 1 4.5909 0.0936 -3.0571 32 1 5.8139 1.7415 -1.1164 33 1 9.0988 2.0947 -4.0630 34 1 11.8095 3.2936 -5.5935 35 1 3.7418 -2.1361 -1.1044 36 1 2.5886 -1.2173 -2.1016 37 1 2.6023 -1.4212 0.9457 38 1 1.4017 -2.1330 -0.1615 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724452771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:33 Heat of formation + Delta-G solvation = -81.736027 kcal Electronic energy + Delta-G solvation = -19669.643579 eV Core-core repulsion = 16511.281127 eV Total energy + Delta-G solvation = -3158.362452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.71555 -38.79286 -37.14981 -35.09310 -34.17293 -32.39806 -31.37749 -31.22257 -28.05369 -25.85957 -24.17135 -23.28544 -22.11549 -20.64709 -19.42129 -18.55752 -18.29969 -17.00373 -15.85328 -15.27626 -15.11114 -15.05492 -14.88751 -14.42260 -14.14450 -13.92811 -13.84602 -13.37250 -12.95678 -12.70704 -12.49544 -12.32850 -12.02124 -11.77074 -11.62612 -11.22193 -11.19593 -10.93333 -10.56402 -10.49946 -10.40756 -10.34334 -10.29947 -9.72934 -9.22581 -8.71300 -8.26452 -8.22139 -6.66761 -3.99067 2.04606 2.46410 3.14228 3.16421 3.23072 3.45135 4.06799 4.29294 4.41066 4.52354 4.62303 4.84930 4.91735 5.10279 5.12546 5.19231 5.22257 5.24094 5.41245 5.53466 5.60094 5.66467 5.73996 5.77442 5.87309 5.91948 6.00492 6.02215 6.10294 6.25052 6.45268 6.67763 6.80659 7.31494 7.70279 7.89228 8.33629 8.64055 8.96873 9.32626 9.85658 10.48270 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.048616 B = 0.003277 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.805459 B = 8541.666968 C = 8938.804518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.087 4.087 4 C -0.114 4.114 5 C -0.099 4.099 6 C 0.124 3.876 7 N -0.714 5.714 8 C 0.512 3.488 9 O -0.547 6.547 10 C 0.394 3.606 11 O -0.598 6.598 12 N -0.500 5.500 13 C -0.305 4.305 14 H 0.113 0.887 15 C 0.030 3.970 16 N -0.869 5.869 17 Si 0.938 3.062 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.108 4.108 22 C -0.085 4.085 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.409 0.591 33 H 0.405 0.595 34 H 0.280 0.720 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -6.989 7.571 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.115 4.115 3 C -0.124 4.124 4 C -0.152 4.152 5 C -0.118 4.118 6 C 0.000 4.000 7 N -0.369 5.369 8 C 0.296 3.704 9 O -0.424 6.424 10 C 0.179 3.821 11 O -0.487 6.487 12 N -0.134 5.134 13 C -0.436 4.436 14 H 0.131 0.869 15 C -0.177 4.177 16 N -0.507 5.507 17 Si 0.764 3.236 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.146 4.146 22 C -0.123 4.123 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.240 0.760 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.907 -7.071 7.329 18.888 hybrid contribution 0.518 0.513 -0.076 0.733 sum -15.389 -6.557 7.252 18.232 Atomic orbital electron populations 1.23603 0.95029 1.01662 1.03798 1.22029 0.95039 0.96022 0.98426 1.20833 0.97664 0.94580 0.99359 1.21643 0.97038 0.97861 0.98655 1.21387 0.95297 0.95644 0.99463 1.21357 0.90385 0.89655 0.98561 1.45687 1.28626 1.30449 1.32098 1.20683 0.81679 0.86147 0.81855 1.90686 1.73044 1.47783 1.30925 1.18981 0.86252 0.88920 0.87983 1.90576 1.75296 1.49428 1.33400 1.41572 1.21777 1.25173 1.24882 1.19929 1.05492 1.05118 1.13065 0.86936 1.25592 0.98146 0.99002 0.94914 1.69490 1.30226 1.36557 1.14446 0.85668 0.79123 0.79958 0.78873 1.18710 1.20295 1.20289 1.21506 0.96927 0.97289 0.98838 1.20808 0.97556 0.94689 0.99212 0.88667 0.88595 0.91259 0.90758 0.90968 0.91535 0.90246 0.91546 0.91582 0.75493 0.76000 0.90974 0.91240 0.91435 0.90850 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 13.99 29.01 0.41 -1.26 16 2 C -0.12 -1.01 5.35 -100.51 -0.54 -1.54 16 3 C -0.09 -0.78 6.03 -27.49 -0.17 -0.95 16 4 C -0.11 -1.16 5.13 -26.63 -0.14 -1.30 16 5 C -0.10 -1.01 2.12 -90.66 -0.19 -1.20 16 6 C 0.12 1.67 5.06 -4.05 -0.02 1.65 16 7 N -0.71 -12.10 5.24 -60.93 -0.32 -12.42 16 8 C 0.51 11.19 7.87 -11.87 -0.09 11.10 16 9 O -0.55 -12.95 16.47 5.42 0.09 -12.87 16 10 C 0.39 9.99 7.82 -11.88 -0.09 9.89 16 11 O -0.60 -16.04 16.03 5.36 0.09 -15.95 16 12 N -0.50 -13.47 5.25 -11.59 -0.06 -13.53 16 13 C -0.31 -8.45 9.67 -15.14 -0.15 -8.60 16 14 H 0.11 3.18 7.15 -52.48 -0.38 2.81 16 15 C 0.03 0.79 5.51 -17.40 -0.10 0.69 16 16 N -0.87 -23.40 13.03 55.53 0.72 -22.68 16 17 Si 0.94 20.12 29.56 -169.99 -5.02 15.09 16 18 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 C -0.11 -0.93 5.22 -26.63 -0.14 -1.07 16 22 C -0.09 -0.68 6.03 -27.48 -0.17 -0.85 16 23 H 0.09 0.69 7.92 -52.48 -0.42 0.27 16 24 H 0.10 0.73 7.92 -52.49 -0.42 0.31 16 25 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.80 7.07 -51.93 -0.37 0.43 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.41 6.54 7.08 -40.82 -0.29 6.25 16 33 H 0.40 10.99 7.35 -40.82 -0.30 10.69 16 34 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.49 7.89 -51.93 -0.41 0.08 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -30.49 320.38 -6.56 -37.05 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -5.50 Total: 13.90 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.38 Total: 6.57 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.34 Total: -48.62 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: 0.18 Total: -28.82 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.49 -6.56 -37.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724452771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.686 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds