Wall clock time and date at job start Mon Mar 30 2020 04:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53236 * 108.53353 * 231.61797 * 3 2 1 5 5 C 1.52954 * 109.40515 * 305.37271 * 4 3 2 6 6 C 1.52998 * 109.41554 * 183.70552 * 5 4 3 7 7 N 1.46495 * 109.47262 * 64.64504 * 6 5 4 8 8 C 1.34776 * 120.00353 * 180.02562 * 7 6 5 9 9 O 1.21438 * 119.99870 * 359.97438 * 8 7 6 10 10 C 1.48836 * 120.00406 * 180.02562 * 8 7 6 11 11 O 1.21503 * 119.99630 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99895 * 179.97438 * 10 8 7 13 13 C 1.36120 * 119.99692 * 179.97438 * 12 10 8 14 14 H 1.08003 * 120.00442 * 0.02562 * 13 12 10 15 15 C 1.39590 * 120.00211 * 179.97438 * 13 12 10 16 16 N 1.31012 * 119.99694 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00295 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47216 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47097 * 120.00120 * 17 15 13 20 20 H 1.48498 * 109.47477 * 240.00846 * 17 15 13 21 21 C 1.52962 * 109.81860 * 63.59882 * 5 4 3 22 22 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 23 23 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 24 24 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 25 25 H 1.08996 * 109.62853 * 351.32771 * 3 2 1 26 26 H 1.08994 * 109.62831 * 111.90784 * 3 2 1 27 27 H 1.09002 * 109.48366 * 185.39419 * 4 3 2 28 28 H 1.09001 * 109.48205 * 65.35438 * 4 3 2 29 29 H 1.09007 * 109.41410 * 303.49063 * 5 4 3 30 30 H 1.09004 * 109.47531 * 184.64460 * 6 5 4 31 31 H 1.09004 * 109.46854 * 304.64828 * 6 5 4 32 32 H 0.97005 * 120.00280 * 0.02562 * 7 6 5 33 33 H 0.96997 * 120.00480 * 0.02562 * 12 10 8 34 34 H 0.96998 * 120.00329 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.48320 * 176.42559 * 21 5 4 36 36 H 1.08997 * 109.49150 * 56.38933 * 21 5 4 37 37 H 1.08997 * 109.62461 * 248.09547 * 22 2 1 38 38 H 1.08996 * 109.62473 * 8.47434 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1099 1.2542 -1.1389 5 6 3.9767 0.0023 -0.9943 6 6 5.0584 0.0048 -2.0764 7 7 5.9614 1.1381 -1.8615 8 6 6.9974 1.3426 -2.6991 9 8 7.1825 0.5870 -3.6316 10 6 7.9152 2.4936 -2.4804 11 8 7.7303 3.2493 -1.5471 12 7 8.9514 2.6977 -3.3177 13 6 9.7905 3.7507 -3.1180 14 1 9.6262 4.4225 -2.2884 15 6 10.8641 3.9619 -3.9849 16 7 11.0638 3.1468 -4.9909 17 14 12.0160 5.4065 -3.7105 18 1 11.5768 6.1697 -2.5147 19 1 13.3972 4.9046 -3.4969 20 1 11.9901 6.2935 -4.9011 21 6 3.1098 -1.2489 -1.1449 22 6 2.0857 -1.2987 -0.0062 23 1 -0.5400 -0.9354 -0.0046 24 1 -0.5399 0.9352 0.0045 25 1 1.4021 2.1334 -0.1548 26 1 2.6023 1.4165 0.9525 27 1 3.7420 2.1411 -1.0942 28 1 2.5886 1.2269 -2.0958 29 1 4.4488 -0.0001 -0.0117 30 1 5.6245 -0.9254 -2.0265 31 1 4.5909 0.0936 -3.0571 32 1 5.8139 1.7415 -1.1164 33 1 9.0988 2.0947 -4.0630 34 1 11.8095 3.2936 -5.5935 35 1 3.7418 -2.1361 -1.1044 36 1 2.5886 -1.2173 -2.1016 37 1 2.6023 -1.4212 0.9457 38 1 1.4017 -2.1330 -0.1615 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724452771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:33 Heat of formation + Delta-G solvation = -102.175527 kcal Electronic energy + Delta-G solvation = -19670.529903 eV Core-core repulsion = 16511.281127 eV Total energy + Delta-G solvation = -3159.248775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35057 -39.87802 -38.96965 -36.60184 -35.92787 -33.64141 -33.26564 -31.95403 -29.16255 -27.70503 -25.45775 -24.13554 -23.50835 -21.60722 -21.07649 -20.35463 -19.26322 -18.78787 -17.63071 -16.79442 -16.73322 -16.20430 -15.82484 -15.70285 -15.67782 -15.30281 -14.80503 -14.65180 -14.44103 -14.09669 -13.68044 -13.52369 -13.19776 -12.98580 -12.92148 -12.57226 -12.41287 -12.29458 -12.08263 -11.88593 -11.79806 -11.67934 -11.32368 -11.04137 -10.28306 -10.24290 -10.18493 -9.86647 -8.66341 -6.11260 0.60337 1.40915 1.41528 1.45993 1.57400 1.84552 2.29938 2.37509 3.15210 3.29604 3.68886 3.69676 3.80192 4.03011 4.11611 4.21826 4.41163 4.42609 4.53554 4.60701 4.66645 4.77791 4.90537 5.01956 5.05216 5.07934 5.19348 5.24031 5.25340 5.26830 5.32282 5.47352 5.68128 5.81480 6.03910 6.16503 6.39014 6.81434 7.02277 7.28034 7.79672 8.49849 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.048616 B = 0.003277 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.805459 B = 8541.666968 C = 8938.804518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.085 4.085 4 C -0.114 4.114 5 C -0.089 4.089 6 C 0.121 3.879 7 N -0.691 5.691 8 C 0.517 3.483 9 O -0.568 6.568 10 C 0.390 3.610 11 O -0.617 6.617 12 N -0.512 5.512 13 C -0.345 4.345 14 H 0.099 0.901 15 C -0.006 4.006 16 N -0.897 5.897 17 Si 1.010 2.990 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.266 1.266 21 C -0.104 4.104 22 C -0.082 4.082 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.400 0.600 34 H 0.289 0.711 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.773 -7.278 8.245 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.129 4.129 3 C -0.122 4.122 4 C -0.152 4.152 5 C -0.108 4.108 6 C -0.001 4.001 7 N -0.344 5.344 8 C 0.300 3.700 9 O -0.447 6.447 10 C 0.174 3.826 11 O -0.506 6.506 12 N -0.146 5.146 13 C -0.474 4.474 14 H 0.117 0.883 15 C -0.210 4.210 16 N -0.534 5.534 17 Si 0.831 3.169 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.142 4.142 22 C -0.120 4.120 23 H 0.124 0.876 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.252 0.748 33 H 0.235 0.765 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.649 -7.378 8.022 19.899 hybrid contribution 0.618 0.553 -0.259 0.869 sum -16.031 -6.825 7.763 19.074 Atomic orbital electron populations 1.23770 0.94969 1.02384 1.02705 1.22104 0.95366 0.96076 0.99393 1.20804 0.97418 0.95172 0.98824 1.21620 0.97174 0.97222 0.99150 1.21342 0.94438 0.96693 0.98310 1.21643 0.90501 0.88092 0.99888 1.45670 1.27165 1.30956 1.30647 1.20076 0.82369 0.85076 0.82521 1.90678 1.73862 1.48173 1.32016 1.19644 0.86185 0.89537 0.87184 1.90543 1.75767 1.50391 1.33938 1.41668 1.22474 1.25265 1.25159 1.20017 1.07276 1.06098 1.14045 0.88321 1.26555 0.98914 1.01530 0.93984 1.69554 1.30982 1.37934 1.14963 0.84634 0.76929 0.76340 0.78971 1.18725 1.19062 1.19066 1.21486 0.96947 0.96515 0.99268 1.20806 0.97435 0.94724 0.98989 0.87625 0.88307 0.90973 0.90494 0.92260 0.91918 0.89640 0.91228 0.91760 0.74758 0.76493 0.90098 0.90346 0.91536 0.90366 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.84 13.99 67.78 0.95 -1.89 16 2 C -0.13 -1.99 5.35 -16.13 -0.09 -2.07 16 3 C -0.09 -1.40 6.03 30.11 0.18 -1.21 16 4 C -0.11 -2.18 5.13 30.66 0.16 -2.03 16 5 C -0.09 -1.67 2.12 -10.82 -0.02 -1.69 16 6 C 0.12 3.12 5.06 86.38 0.44 3.56 16 7 N -0.69 -23.04 5.24 -465.01 -2.43 -25.47 16 8 C 0.52 22.70 7.87 87.08 0.69 23.39 16 9 O -0.57 -27.04 16.47 -3.52 -0.06 -27.10 16 10 C 0.39 20.12 7.82 87.08 0.68 20.80 16 11 O -0.62 -33.58 16.03 -3.73 -0.06 -33.64 16 12 N -0.51 -28.35 5.25 -308.87 -1.62 -29.97 16 13 C -0.34 -19.50 9.67 84.35 0.82 -18.69 16 14 H 0.10 5.74 7.15 -2.91 -0.02 5.72 16 15 C -0.01 -0.30 5.51 85.14 0.47 0.17 16 16 N -0.90 -48.45 13.03 21.77 0.28 -48.17 16 17 Si 1.01 40.87 29.56 68.60 2.03 42.90 16 18 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 20 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 21 C -0.10 -1.57 5.22 30.66 0.16 -1.41 16 22 C -0.08 -1.11 6.03 30.11 0.18 -0.93 16 23 H 0.11 1.25 7.92 -2.91 -0.02 1.23 16 24 H 0.10 1.31 7.92 -2.91 -0.02 1.29 16 25 H 0.07 1.13 7.89 -2.39 -0.02 1.11 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.28 7.07 -2.39 -0.02 1.26 16 28 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.42 13.00 7.08 -92.70 -0.66 12.35 16 33 H 0.40 22.45 7.35 -92.71 -0.68 21.76 16 34 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.92 7.89 -2.39 -0.02 0.90 16 Total: -1.00 -65.28 320.38 2.48 -62.80 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: -0.26 Total: 40.65 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 4.61 Total: 18.00 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -3.77 Total: -103.61 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -0.12 Total: -60.74 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -65.28 2.48 -62.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724452771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.379 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds