Wall clock time and date at job start Mon Mar 30 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47454 * 2 1 4 4 H 1.09008 * 109.47339 * 304.99956 * 3 2 1 5 5 C 1.50697 * 109.47452 * 185.00138 * 3 2 1 6 6 H 1.07994 * 120.00242 * 240.00268 * 5 3 2 7 7 C 1.37885 * 119.99743 * 59.99636 * 5 3 2 8 8 N 1.31515 * 120.00305 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99790 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47236 * 90.00166 * 9 7 5 11 11 H 1.48502 * 109.47232 * 210.00020 * 9 7 5 12 12 H 1.48503 * 109.47319 * 330.00121 * 9 7 5 13 13 N 1.46495 * 109.47381 * 65.00028 * 3 2 1 14 14 C 1.34780 * 120.00046 * 275.00189 * 13 3 2 15 15 O 1.21703 * 119.99970 * 0.02562 * 14 13 3 16 16 C 1.46659 * 119.99994 * 179.97438 * 14 13 3 17 17 C 1.36549 * 125.98470 * 180.02562 * 16 14 13 18 18 C 1.40364 * 106.70174 * 179.97438 * 17 16 14 19 19 C 1.35125 * 107.11805 * 359.97438 * 18 17 16 20 20 C 1.50706 * 125.61476 * 179.97438 * 19 18 17 21 21 N 1.46902 * 109.46577 * 90.00374 * 20 19 18 22 22 C 1.46905 * 110.99800 * 179.97438 * 21 20 19 23 23 O 1.33929 * 108.76739 * 0.23327 * 19 18 17 24 24 H 1.08997 * 109.46954 * 300.00076 * 1 2 3 25 25 H 1.09000 * 109.46939 * 59.99942 * 1 2 3 26 26 H 1.08994 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46630 * 240.00084 * 2 1 3 28 28 H 1.09000 * 109.46939 * 120.00058 * 2 1 3 29 29 H 0.96992 * 119.99976 * 179.97438 * 8 7 5 30 30 H 0.96994 * 120.00164 * 94.99963 * 13 3 2 31 31 H 1.07995 * 126.64459 * 359.92785 * 17 16 14 32 32 H 1.08004 * 126.43592 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47318 * 209.99882 * 20 19 18 34 34 H 1.09000 * 109.47161 * 330.00512 * 20 19 18 35 35 H 1.00898 * 110.99915 * 56.05080 * 21 20 19 36 36 H 1.09002 * 109.47091 * 300.00139 * 22 21 20 37 37 H 1.09001 * 109.46854 * 60.00166 * 22 21 20 38 38 H 1.09002 * 109.47379 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8887 0.6522 7 6 4.1432 0.8782 -1.2281 8 7 3.4061 0.3372 -2.1734 9 14 6.0049 0.8798 -1.3813 10 1 6.5538 -0.3522 -0.7600 11 1 6.3835 0.9211 -2.8166 12 1 6.5576 2.0717 -0.6891 13 7 1.6526 2.0975 1.2517 14 6 0.4353 2.6644 1.3669 15 8 -0.3422 2.6318 0.4312 16 6 0.0472 3.3197 2.6203 17 6 -1.1488 3.9295 2.8700 18 6 -1.0870 4.4155 4.1853 19 6 0.1283 4.0848 4.6748 20 6 0.6349 4.4068 6.0571 21 7 0.2853 3.3133 6.9737 22 6 0.7649 3.5927 8.3338 23 8 0.8105 3.4288 3.7272 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0606 -2.9503 30 1 2.2720 2.1231 1.9977 31 1 -1.9807 4.0207 2.1874 32 1 -1.8647 4.9528 4.7078 33 1 1.7181 4.5247 6.0288 34 1 0.1775 5.3329 6.4052 35 1 0.6438 2.4318 6.6382 36 1 1.8491 3.7048 8.3209 37 1 0.3087 4.5133 8.6979 38 1 0.4932 2.7672 8.9917 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724842970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:33 Heat of formation + Delta-G solvation = -26.816367 kcal Electronic energy + Delta-G solvation = -20095.172165 eV Core-core repulsion = 16939.191208 eV Total energy + Delta-G solvation = -3155.980957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.53235 -38.85389 -36.44445 -35.16655 -33.02419 -32.36294 -31.21801 -30.41110 -27.50638 -26.47577 -24.08373 -23.12344 -21.93287 -21.40421 -20.08424 -19.39966 -18.18520 -16.61799 -16.33550 -16.01297 -15.41614 -15.33543 -14.73524 -14.41583 -14.18977 -13.62722 -13.42902 -12.96990 -12.83001 -12.72923 -12.64670 -12.22971 -12.04570 -11.87445 -11.54774 -11.26778 -11.01935 -10.84789 -10.35784 -10.21633 -9.87247 -9.68445 -9.39143 -9.08042 -8.91523 -8.53420 -8.41747 -7.88481 -6.14573 -4.24123 1.30632 2.46476 2.78303 3.23446 3.30432 3.32742 3.80172 3.95247 4.08411 4.35124 4.55042 4.90573 5.02494 5.06752 5.16667 5.17919 5.22160 5.41098 5.53532 5.80556 5.94475 6.06059 6.38078 6.44577 6.47975 6.50976 6.63615 6.90186 7.00443 7.03808 7.19445 7.29944 7.36361 7.59605 7.70352 7.86244 8.13839 8.56687 8.71266 8.97985 9.42641 10.90880 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.004586 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.719007 B = 6103.512526 C = 6877.636477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.692 5.692 14 C 0.583 3.417 15 O -0.527 6.527 16 C -0.051 4.051 17 C -0.141 4.141 18 C -0.193 4.193 19 C -0.006 4.006 20 C 0.140 3.860 21 N -0.692 5.692 22 C 0.027 3.973 23 O -0.162 6.162 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.025 0.975 27 H 0.101 0.899 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.393 0.607 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.349 0.651 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 6.232 16.500 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.339 5.339 14 C 0.367 3.633 15 O -0.406 6.406 16 C -0.104 4.104 17 C -0.162 4.162 18 C -0.213 4.213 19 C -0.058 4.058 20 C 0.012 3.988 21 N -0.324 5.324 22 C -0.123 4.123 23 O -0.058 6.058 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.120 0.880 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.226 0.774 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.167 0.833 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.537 6.210 15.758 17.819 hybrid contribution 2.020 -0.108 0.171 2.030 sum -3.517 6.101 15.928 17.416 Atomic orbital electron populations 1.21857 0.98286 0.98289 1.01235 1.21948 0.92680 0.99559 1.02491 1.18908 0.94511 0.89337 0.80529 0.92936 1.21212 0.90519 1.39240 1.06434 0.92015 1.24878 0.98694 0.94720 0.95294 1.69887 1.35180 1.37487 1.09319 0.86435 0.84743 0.78461 0.77402 1.20514 1.21019 1.19860 1.46504 1.13921 1.54513 1.18940 1.16632 0.83531 0.79228 0.83875 1.90856 1.51882 1.60581 1.37294 1.22764 0.92385 1.07225 0.87982 1.21908 0.97882 0.99605 0.96768 1.21492 0.97724 1.06512 0.95547 1.22395 0.92599 0.99671 0.91170 1.20371 0.98988 0.95480 0.84007 1.60465 1.64265 1.05307 1.02348 1.22224 0.97739 1.02606 0.89682 1.84010 1.41768 1.59523 1.20493 0.94361 0.93019 0.95610 0.88045 0.94892 0.92488 0.77413 0.82427 0.83009 0.93077 0.87844 0.83273 0.95624 0.91426 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.79 2.24 -69.09 -0.15 6.64 16 4 H 0.05 1.52 7.58 -51.92 -0.39 1.13 16 5 C -0.54 -14.18 8.73 -34.44 -0.30 -14.48 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.52 11.29 55.43 0.63 -23.90 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.69 -14.99 5.02 -56.25 -0.28 -15.28 16 14 C 0.58 12.31 6.35 -12.86 -0.08 12.22 16 15 O -0.53 -12.48 14.00 5.19 0.07 -12.41 16 16 C -0.05 -0.89 7.13 -36.79 -0.26 -1.16 16 17 C -0.14 -2.18 10.62 -39.39 -0.42 -2.60 16 18 C -0.19 -2.48 10.77 -39.89 -0.43 -2.91 16 19 C -0.01 -0.08 6.82 -35.41 -0.24 -0.32 16 20 C 0.14 1.31 6.21 -4.97 -0.03 1.28 16 21 N -0.69 -6.33 6.85 -122.41 -0.84 -7.16 16 22 C 0.03 0.18 10.70 60.07 0.64 0.82 16 23 O -0.16 -2.55 10.40 5.02 0.05 -2.50 16 24 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.39 7.71 8.29 -40.82 -0.34 7.38 16 31 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.15 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.35 3.28 8.81 -39.29 -0.35 2.93 16 36 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -29.73 320.52 -7.19 -36.92 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.43 Total: 8.85 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.20 Total: -4.88 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.49 Total: -46.34 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.12 Total: -14.91 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.73 -7.19 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724842970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.106 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds