Wall clock time and date at job start Mon Mar 30 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47454 * 2 1 4 4 H 1.09008 * 109.47339 * 304.99956 * 3 2 1 5 5 C 1.50697 * 109.47452 * 185.00138 * 3 2 1 6 6 H 1.07994 * 120.00242 * 240.00268 * 5 3 2 7 7 C 1.37885 * 119.99743 * 59.99636 * 5 3 2 8 8 N 1.31515 * 120.00305 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99790 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47236 * 90.00166 * 9 7 5 11 11 H 1.48502 * 109.47232 * 210.00020 * 9 7 5 12 12 H 1.48503 * 109.47319 * 330.00121 * 9 7 5 13 13 N 1.46495 * 109.47381 * 65.00028 * 3 2 1 14 14 C 1.34780 * 120.00046 * 275.00189 * 13 3 2 15 15 O 1.21703 * 119.99970 * 0.02562 * 14 13 3 16 16 C 1.46659 * 119.99994 * 179.97438 * 14 13 3 17 17 C 1.36549 * 125.98470 * 180.02562 * 16 14 13 18 18 C 1.40364 * 106.70174 * 179.97438 * 17 16 14 19 19 C 1.35125 * 107.11805 * 359.97438 * 18 17 16 20 20 C 1.50706 * 125.61476 * 179.97438 * 19 18 17 21 21 N 1.46902 * 109.46577 * 90.00374 * 20 19 18 22 22 C 1.46905 * 110.99800 * 179.97438 * 21 20 19 23 23 O 1.33929 * 108.76739 * 0.23327 * 19 18 17 24 24 H 1.08997 * 109.46954 * 300.00076 * 1 2 3 25 25 H 1.09000 * 109.46939 * 59.99942 * 1 2 3 26 26 H 1.08994 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46630 * 240.00084 * 2 1 3 28 28 H 1.09000 * 109.46939 * 120.00058 * 2 1 3 29 29 H 0.96992 * 119.99976 * 179.97438 * 8 7 5 30 30 H 0.96994 * 120.00164 * 94.99963 * 13 3 2 31 31 H 1.07995 * 126.64459 * 359.92785 * 17 16 14 32 32 H 1.08004 * 126.43592 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47318 * 209.99882 * 20 19 18 34 34 H 1.09000 * 109.47161 * 330.00512 * 20 19 18 35 35 H 1.00898 * 110.99915 * 56.05080 * 21 20 19 36 36 H 1.09002 * 109.47091 * 300.00139 * 22 21 20 37 37 H 1.09001 * 109.46854 * 60.00166 * 22 21 20 38 38 H 1.09002 * 109.47379 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8887 0.6522 7 6 4.1432 0.8782 -1.2281 8 7 3.4061 0.3372 -2.1734 9 14 6.0049 0.8798 -1.3813 10 1 6.5538 -0.3522 -0.7600 11 1 6.3835 0.9211 -2.8166 12 1 6.5576 2.0717 -0.6891 13 7 1.6526 2.0975 1.2517 14 6 0.4353 2.6644 1.3669 15 8 -0.3422 2.6318 0.4312 16 6 0.0472 3.3197 2.6203 17 6 -1.1488 3.9295 2.8700 18 6 -1.0870 4.4155 4.1853 19 6 0.1283 4.0848 4.6748 20 6 0.6349 4.4068 6.0571 21 7 0.2853 3.3133 6.9737 22 6 0.7649 3.5927 8.3338 23 8 0.8105 3.4288 3.7272 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5139 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0606 -2.9503 30 1 2.2720 2.1231 1.9977 31 1 -1.9807 4.0207 2.1874 32 1 -1.8647 4.9528 4.7078 33 1 1.7181 4.5247 6.0288 34 1 0.1775 5.3329 6.4052 35 1 0.6438 2.4318 6.6382 36 1 1.8491 3.7048 8.3209 37 1 0.3087 4.5133 8.6979 38 1 0.4932 2.7672 8.9917 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724842970.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:32 Heat of formation + Delta-G solvation = -48.234255 kcal Electronic energy + Delta-G solvation = -20096.100914 eV Core-core repulsion = 16939.191208 eV Total energy + Delta-G solvation = -3156.909706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.70998 -40.57474 -37.15928 -37.03661 -34.48395 -33.99615 -32.99130 -31.57630 -29.19876 -27.70792 -25.29408 -24.58752 -23.28570 -22.58074 -21.65910 -21.09695 -19.75072 -18.09939 -17.53396 -17.33859 -17.16370 -16.38266 -16.17476 -16.09286 -15.26782 -15.13695 -14.66903 -14.26284 -14.22295 -13.94834 -13.83213 -13.52886 -13.46749 -13.19551 -12.95126 -12.83100 -12.68809 -12.58019 -12.20861 -12.10542 -11.64083 -11.15553 -11.09104 -11.01450 -10.56689 -9.89015 -9.61944 -9.40002 -8.18588 -6.36338 0.03263 1.35227 1.44057 1.44658 1.55003 1.60703 2.23640 2.33261 2.55956 3.10824 3.33096 3.59525 3.93293 3.97886 4.28236 4.44302 4.46485 4.54161 4.57958 4.62854 4.68480 4.71972 4.85609 4.94178 5.03956 5.08451 5.22143 5.38883 5.42394 5.45041 5.55446 5.70980 5.79311 5.86996 5.97997 6.11546 6.24666 6.68301 6.81833 7.22264 7.38970 8.87010 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.004586 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.719007 B = 6103.512526 C = 6877.636477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.276 3.724 4 H 0.006 0.994 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.693 5.693 14 C 0.584 3.416 15 O -0.563 6.563 16 C -0.091 4.091 17 C -0.127 4.127 18 C -0.194 4.194 19 C 0.011 3.989 20 C 0.141 3.859 21 N -0.703 5.703 22 C 0.027 3.973 23 O -0.172 6.172 24 H 0.039 0.961 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.267 0.733 30 H 0.403 0.597 31 H 0.162 0.838 32 H 0.186 0.814 33 H 0.058 0.942 34 H 0.130 0.870 35 H 0.345 0.655 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 7.066 19.173 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.024 0.976 5 C -0.591 4.591 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.340 5.340 14 C 0.371 3.629 15 O -0.445 6.445 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.214 4.214 19 C -0.042 4.042 20 C 0.013 3.987 21 N -0.334 5.334 22 C -0.122 4.122 23 O -0.068 6.068 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.237 0.763 31 H 0.180 0.820 32 H 0.203 0.797 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.162 0.838 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.157 7.055 18.471 20.434 hybrid contribution 1.833 -0.294 -0.535 1.932 sum -3.323 6.761 17.936 19.454 Atomic orbital electron populations 1.21698 0.96888 0.99476 1.00253 1.21798 0.93856 0.98810 1.01537 1.18525 0.94023 0.89410 0.80676 0.97606 1.21526 0.91179 1.39456 1.06928 0.91344 1.25748 1.03423 0.94171 0.94830 1.70030 1.37124 1.38048 1.09800 0.85351 0.78915 0.78832 0.77276 1.19572 1.20968 1.19131 1.46260 1.14729 1.54906 1.18071 1.16953 0.82623 0.78465 0.84854 1.90821 1.52668 1.61909 1.39114 1.22025 0.93834 1.10533 0.87965 1.22189 0.96862 0.97776 0.97984 1.21837 0.98618 1.06607 0.94296 1.23250 0.92335 0.96947 0.91657 1.20602 0.99645 0.96505 0.81977 1.60503 1.64648 1.05024 1.03253 1.22290 0.98132 1.03432 0.88325 1.83987 1.42087 1.60238 1.20463 0.94236 0.95058 0.93181 0.90432 0.94133 0.92402 0.76268 0.82038 0.79687 0.92373 0.85246 0.83752 0.95121 0.90328 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.51 71.98 0.61 -5.18 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.54 2.24 44.24 0.10 14.64 16 4 H 0.01 0.37 7.58 -2.38 -0.02 0.35 16 5 C -0.55 -29.79 8.73 25.60 0.22 -29.57 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -52.04 11.29 21.45 0.24 -51.80 16 9 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 13 N -0.69 -30.89 5.02 -450.09 -2.26 -33.15 16 14 C 0.58 25.40 6.35 86.44 0.55 25.95 16 15 O -0.56 -27.86 14.00 -4.36 -0.06 -27.92 16 16 C -0.09 -3.22 7.13 24.08 0.17 -3.05 16 17 C -0.13 -3.80 10.62 22.39 0.24 -3.56 16 18 C -0.19 -4.43 10.77 22.07 0.24 -4.19 16 19 C 0.01 0.24 6.82 24.97 0.17 0.41 16 20 C 0.14 2.16 6.21 85.56 0.53 2.69 16 21 N -0.70 -10.77 6.85 -541.20 -3.70 -14.48 16 22 C 0.03 0.28 10.70 127.69 1.37 1.64 16 23 O -0.17 -5.21 10.40 -4.94 -0.05 -5.26 16 24 H 0.04 1.78 5.64 -2.39 -0.01 1.77 16 25 H 0.03 1.53 7.84 -2.39 -0.02 1.51 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 4.29 5.95 -2.38 -0.01 4.28 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.40 16.09 8.29 -92.71 -0.77 15.33 16 31 H 0.16 4.59 8.06 -2.91 -0.02 4.57 16 32 H 0.19 2.93 8.06 -2.91 -0.02 2.90 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.35 5.73 8.81 -89.70 -0.79 4.94 16 36 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -65.81 320.52 0.53 -65.28 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.48 Total: 27.75 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 4.81 Total: -4.66 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -5.72 Total: -99.43 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.11 Total: -33.18 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -65.81 0.53 -65.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724842970.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.046 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds