Wall clock time and date at job start Mon Mar 30 2020 05:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.04040 * 2 1 4 4 C 1.35311 * 107.75028 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.04309 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46902 * 179.97438 * 5 4 3 7 7 C 1.52991 * 109.47095 * 299.99691 * 5 4 3 8 8 C 1.50703 * 109.47040 * 59.99948 * 5 4 3 9 9 O 1.20827 * 120.00134 * 359.97438 * 8 5 4 10 10 O 1.34225 * 119.99727 * 180.02562 * 8 5 4 11 11 C 1.45205 * 116.99554 * 179.97438 * 10 8 5 12 12 C 1.53004 * 109.46715 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.46976 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00071 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00134 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00161 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47020 * 90.00276 * 17 15 13 19 19 H 1.48502 * 109.47455 * 210.00412 * 17 15 13 20 20 H 1.48504 * 109.47192 * 330.00546 * 17 15 13 21 21 C 1.39876 * 107.91749 * 359.97438 * 4 3 2 22 22 N 1.30834 * 108.20073 * 0.27043 * 21 4 3 23 23 H 1.08995 * 109.47266 * 90.00219 * 1 2 3 24 24 H 1.08996 * 109.47009 * 210.00717 * 1 2 3 25 25 H 1.09011 * 109.46832 * 330.00309 * 1 2 3 26 26 H 1.08009 * 126.12562 * 359.96327 * 3 2 1 27 27 H 1.08994 * 109.47246 * 60.00354 * 6 5 4 28 28 H 1.09007 * 109.46727 * 179.97438 * 6 5 4 29 29 H 1.08991 * 109.47103 * 299.99631 * 6 5 4 30 30 H 1.09001 * 109.47369 * 59.99709 * 7 5 4 31 31 H 1.08997 * 109.47308 * 180.02562 * 7 5 4 32 32 H 1.09007 * 109.47220 * 300.00101 * 7 5 4 33 33 H 1.08999 * 109.47294 * 299.99398 * 11 10 8 34 34 H 1.08998 * 109.47304 * 60.00416 * 11 10 8 35 35 H 1.08999 * 109.47444 * 300.00424 * 12 11 10 36 36 H 1.09003 * 109.47154 * 60.00403 * 12 11 10 37 37 H 0.97003 * 119.99811 * 179.97438 * 16 15 13 38 38 H 1.08002 * 125.89548 * 179.97438 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7681 1.5452 -0.0002 6 6 6.0235 0.6706 -0.0005 7 6 4.7616 2.4293 -1.2488 8 6 4.7622 2.4145 1.2308 9 8 3.8565 2.3295 2.0261 10 8 5.7626 3.2837 1.4433 11 6 5.6911 4.0890 2.6495 12 6 6.9091 5.0123 2.7193 13 6 6.8346 5.8484 3.9708 14 1 6.0020 5.7326 4.6489 15 6 7.8299 6.7606 4.2508 16 7 8.8440 6.9013 3.4253 17 14 7.7379 7.7965 5.8024 18 1 8.4200 7.0855 6.9135 19 1 8.4054 9.1019 5.5664 20 1 6.3152 8.0257 6.1610 21 6 3.5346 -0.7322 -0.0003 22 7 2.2891 -1.1328 -0.0055 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8901 0.5138 26 1 1.9282 2.1194 -0.0006 27 1 6.0279 0.0417 -0.8906 28 1 6.9090 1.3062 -0.0007 29 1 6.0279 0.0411 0.8893 30 1 3.8672 3.0523 -1.2483 31 1 5.6473 3.0645 -1.2489 32 1 4.7658 1.8006 -2.1393 33 1 4.7809 4.6884 2.6328 34 1 5.6802 3.4360 3.5222 35 1 7.8192 4.4126 2.7361 36 1 6.9205 5.6653 1.8466 37 1 9.5441 7.5433 3.6221 38 1 4.4054 -1.3711 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784922299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:33 Heat of formation + Delta-G solvation = -43.428769 kcal Electronic energy + Delta-G solvation = -20022.114229 eV Core-core repulsion = 16865.412904 eV Total energy + Delta-G solvation = -3156.701325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.48643 -41.26306 -37.80307 -36.59726 -35.41571 -33.78400 -32.26101 -30.58301 -28.39268 -27.35981 -27.13991 -24.98426 -23.11067 -22.34068 -21.81341 -20.40708 -18.72514 -18.06520 -17.87624 -17.41952 -17.05973 -16.50520 -16.20252 -15.31440 -15.21785 -15.04967 -14.63190 -14.36614 -14.19306 -13.64646 -13.49386 -13.36608 -13.32705 -13.05618 -12.92734 -12.89587 -12.58557 -12.55734 -12.39062 -12.04004 -11.77828 -11.58937 -11.46994 -11.43033 -11.08101 -10.60387 -10.36512 -9.40976 -8.26311 -6.39391 0.90037 1.26020 1.40856 1.42977 1.50756 1.55583 1.67720 2.11494 2.42030 3.07969 3.44464 3.79784 3.82135 3.97643 4.10507 4.19430 4.23960 4.29449 4.38737 4.42437 4.66281 4.70867 4.75831 4.77296 4.84223 4.92832 5.03249 5.06540 5.25690 5.33398 5.37850 5.48897 5.57605 5.67881 5.77243 6.06583 6.08089 6.69396 6.73315 6.83442 7.30273 8.86185 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.035048 B = 0.003661 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.720863 B = 7647.252764 C = 8085.067592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.380 5.380 3 C 0.082 3.918 4 C -0.240 4.240 5 C 0.036 3.964 6 C -0.140 4.140 7 C -0.134 4.134 8 C 0.458 3.542 9 O -0.540 6.540 10 O -0.359 6.359 11 C 0.091 3.909 12 C 0.033 3.967 13 C -0.551 4.551 14 H 0.062 0.938 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.972 3.028 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.264 1.264 21 C 0.060 3.940 22 N -0.329 5.329 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.180 0.820 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.007 0.993 36 H 0.008 0.992 37 H 0.268 0.732 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.844 -13.113 -11.080 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 C -0.066 4.066 4 C -0.251 4.251 5 C 0.033 3.967 6 C -0.197 4.197 7 C -0.191 4.191 8 C 0.302 3.698 9 O -0.430 6.430 10 O -0.275 6.275 11 C 0.017 3.983 12 C -0.004 4.004 13 C -0.589 4.589 14 H 0.081 0.919 15 C -0.192 4.192 16 N -0.564 5.564 17 Si 0.796 3.204 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.126 4.126 22 N -0.151 5.151 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.197 0.803 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -13.929 -14.032 -10.856 22.556 hybrid contribution 0.574 1.482 1.111 1.939 sum -13.355 -12.550 -9.745 20.756 Atomic orbital electron populations 1.22185 0.72061 1.05637 1.04823 1.48748 1.07927 1.03213 1.56279 1.22470 0.91075 0.93877 0.99187 1.19540 0.93066 0.93766 1.18768 1.18728 0.95341 0.92605 0.90016 1.21912 0.94177 0.99493 1.04131 1.21891 1.02872 0.99130 0.95209 1.24595 0.78683 0.78281 0.88196 1.90583 1.37281 1.67304 1.47787 1.86520 1.47351 1.48866 1.44749 1.23106 1.00334 0.91641 0.83183 1.18957 0.91769 0.92971 0.96743 1.21378 1.08478 1.21728 1.07335 0.91931 1.25938 0.94543 0.98164 1.00521 1.70090 1.11467 1.36454 1.38436 0.85346 0.78772 0.77750 0.78572 1.19601 1.20284 1.18813 1.24116 0.95680 0.94147 0.98629 1.77264 1.02188 1.09403 1.26211 0.88882 0.88904 0.87819 0.80310 0.87785 0.91205 0.92274 0.92410 0.91287 0.88643 0.92467 0.92828 0.97503 0.97344 0.92313 0.77759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 11.47 127.77 1.47 2.66 16 2 N -0.38 -8.55 4.01 -369.56 -1.48 -10.04 16 3 C 0.08 1.95 10.12 83.54 0.85 2.80 16 4 C -0.24 -5.97 4.32 -20.14 -0.09 -6.05 16 5 C 0.04 0.90 0.87 -53.67 -0.05 0.85 16 6 C -0.14 -2.91 7.33 71.98 0.53 -2.39 16 7 C -0.13 -2.79 8.28 71.98 0.60 -2.20 16 8 C 0.46 16.11 6.50 71.24 0.46 16.58 16 9 O -0.54 -21.70 15.11 21.96 0.33 -21.37 16 10 O -0.36 -14.43 10.03 -51.37 -0.51 -14.95 16 11 C 0.09 4.14 5.40 71.98 0.39 4.53 16 12 C 0.03 1.77 5.35 29.85 0.16 1.93 16 13 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 14 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 15 C 0.01 0.42 5.46 84.65 0.46 0.89 16 16 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 17 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 C 0.06 1.40 10.96 85.24 0.93 2.33 16 22 N -0.33 -8.48 12.58 -57.02 -0.72 -9.20 16 23 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 27 H 0.10 1.48 7.96 -2.39 -0.02 1.47 16 28 H 0.07 1.57 8.11 -2.38 -0.02 1.55 16 29 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 30 H 0.06 1.18 8.00 -2.39 -0.02 1.17 16 31 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 32 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.06 2.58 8.13 -2.39 -0.02 2.56 16 34 H 0.05 2.46 8.13 -2.39 -0.02 2.44 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.21 3.51 7.39 -2.91 -0.02 3.48 16 Total: -1.00 -72.30 327.82 6.90 -65.40 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.03 Total: 8.79 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.94 Total: -9.30 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.92 Total: -74.25 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.18 Total: -36.32 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -72.30 6.90 -65.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784922299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.969 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds