Wall clock time and date at job start Mon Mar 30 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46705 * 2 1 4 4 H 1.09005 * 109.46984 * 304.99560 * 3 2 1 5 5 C 1.50706 * 109.46703 * 185.00172 * 3 2 1 6 6 H 1.07989 * 119.99774 * 239.99913 * 5 3 2 7 7 C 1.37878 * 119.99940 * 60.00249 * 5 3 2 8 8 N 1.31520 * 120.00194 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00067 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47143 * 89.99365 * 9 7 5 11 11 H 1.48499 * 109.47356 * 209.99832 * 9 7 5 12 12 H 1.48499 * 109.47078 * 329.99895 * 9 7 5 13 13 O 1.45190 * 109.47357 * 65.00427 * 3 2 1 14 14 C 1.34238 * 116.99739 * 269.99939 * 13 3 2 15 15 O 1.20819 * 120.00226 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99751 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.47359 * 300.00013 * 16 14 13 18 18 C 1.53001 * 109.47321 * 59.99713 * 16 14 13 19 19 C 1.50700 * 109.46932 * 179.97438 * 16 14 13 20 20 C 1.39870 * 126.04185 * 299.97692 * 19 16 14 21 21 N 1.30839 * 108.19862 * 180.02562 * 20 19 16 22 22 N 1.40079 * 108.20849 * 359.97438 * 21 20 19 23 23 C 1.46502 * 126.03442 * 179.97438 * 22 21 20 24 24 C 1.34948 * 107.92564 * 0.02562 * 22 21 20 25 25 H 1.08998 * 109.46870 * 299.99947 * 1 2 3 26 26 H 1.08996 * 109.47385 * 60.00256 * 1 2 3 27 27 H 1.09000 * 109.46785 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46870 * 240.00053 * 2 1 3 29 29 H 1.08996 * 109.47385 * 119.99744 * 2 1 3 30 30 H 0.96996 * 119.99993 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47422 * 299.99846 * 18 16 14 32 32 H 1.09003 * 109.47114 * 60.00150 * 18 16 14 33 33 H 1.09003 * 109.47265 * 179.97438 * 18 16 14 34 34 H 1.07997 * 125.89658 * 359.97438 * 20 19 16 35 35 H 1.09008 * 109.47064 * 269.99643 * 23 22 21 36 36 H 1.08998 * 109.47431 * 29.99992 * 23 22 21 37 37 H 1.08999 * 109.46741 * 150.00314 * 23 22 21 38 38 H 1.08007 * 126.12251 * 180.26869 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1730 9 14 6.0049 0.8813 -1.3820 10 1 6.5548 -0.3501 -0.7603 11 1 6.3828 0.9225 -2.8175 12 1 6.5569 2.0739 -0.6904 13 8 1.6559 2.0917 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2189 2.7377 0.2653 16 6 0.0075 3.4225 2.5084 17 1 -0.0711 2.6985 3.3194 18 6 1.0140 4.5095 2.8909 19 6 -1.3402 4.0505 2.2626 20 6 -1.6316 5.0240 1.3015 21 7 -2.9029 5.3199 1.3919 22 7 -3.4616 4.5424 2.4145 23 6 -4.8616 4.5628 2.8456 24 6 -2.4823 3.7723 2.9330 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0617 -2.9496 31 1 1.9889 4.0558 3.0685 32 1 1.0925 5.2336 2.0799 33 1 0.6772 5.0141 3.7965 34 1 -0.9285 5.4572 0.6057 35 1 -4.9883 5.3052 3.6337 36 1 -5.4988 4.8190 1.9992 37 1 -5.1392 3.5794 3.2249 38 1 -2.5916 3.0581 3.7358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787077284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:21 Heat of formation + Delta-G solvation = -19.225225 kcal Electronic energy + Delta-G solvation = -20565.428336 eV Core-core repulsion = 17409.776556 eV Total energy + Delta-G solvation = -3155.651780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20149 -39.42440 -35.86184 -34.23085 -33.41564 -32.48806 -31.25994 -29.38118 -27.25857 -26.47984 -24.40460 -23.05895 -21.38202 -20.98955 -19.88275 -19.06018 -17.04986 -16.53191 -16.41045 -15.47409 -15.38527 -14.96236 -14.52102 -14.16614 -13.93416 -13.26599 -12.90326 -12.85953 -12.77970 -12.58737 -12.11512 -12.05802 -11.54289 -11.40076 -11.28326 -11.15794 -11.08356 -10.90390 -10.58351 -10.38175 -10.23803 -9.73689 -9.43519 -9.32444 -9.19445 -8.73714 -8.40668 -8.30223 -6.14196 -4.20982 1.94678 2.56666 2.88899 3.17636 3.26975 3.32777 3.36742 3.92180 4.37633 4.50937 4.83481 4.98478 5.05606 5.17577 5.20410 5.24062 5.38392 5.49990 5.78002 5.82233 6.00329 6.09725 6.25646 6.28361 6.34999 6.43667 6.52177 6.76164 6.92836 7.02540 7.05391 7.23042 7.35233 7.67146 7.79290 7.80191 8.03897 8.22676 8.74181 8.99844 9.44401 10.92504 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034678 B = 0.004565 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.226081 B = 6132.273798 C = 6465.897446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.519 4.519 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.509 6.509 16 C -0.007 4.007 17 H 0.103 0.897 18 C -0.136 4.136 19 C -0.214 4.214 20 C 0.084 3.916 21 N -0.304 5.304 22 N -0.383 5.383 23 C 0.106 3.894 24 C 0.058 3.942 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.107 0.893 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.180 0.820 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 5.872 11.912 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.296 3.704 15 O -0.398 6.398 16 C -0.027 4.027 17 H 0.121 0.879 18 C -0.194 4.194 19 C -0.226 4.226 20 C -0.102 4.102 21 N -0.125 5.125 22 N -0.165 5.165 23 C -0.036 4.036 24 C -0.087 4.087 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.125 0.875 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.197 0.803 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.384 6.470 10.988 17.775 hybrid contribution 1.428 -0.763 0.031 1.619 sum -10.956 5.707 11.019 16.553 Atomic orbital electron populations 1.21844 0.98422 0.98779 1.00784 1.22014 0.92569 0.99541 1.03222 1.20617 0.94849 0.88679 0.78949 0.93614 1.21057 0.89813 1.38753 1.06119 0.91359 1.24884 0.99113 0.94870 0.95111 1.69896 1.35300 1.37925 1.09511 0.86308 0.84092 0.78641 0.77298 1.20418 1.21042 1.19628 1.86459 1.34392 1.62555 1.43860 1.23212 0.80679 0.76985 0.89566 1.90604 1.55346 1.58109 1.35762 1.19145 0.91446 0.97169 0.94950 0.87915 1.21709 0.98538 0.97516 1.01601 1.19537 0.94904 1.05155 1.02978 1.23658 0.92918 0.96063 0.97585 1.77344 1.10005 1.17733 1.07399 1.48351 1.08504 1.31925 1.27720 1.21776 0.77646 1.03111 1.01073 1.22199 0.88192 0.97737 1.00604 0.94920 0.92901 0.95037 0.87473 0.94076 0.92471 0.90751 0.92189 0.91876 0.80322 0.91069 0.89482 0.89723 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.57 37.16 0.32 -2.83 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.89 2.25 -27.88 -0.06 5.83 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.50 8.90 -34.44 -0.31 -14.80 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.22 11.29 55.43 0.63 -24.59 16 9 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 13 O -0.36 -8.33 9.71 -39.28 -0.38 -8.71 16 14 C 0.45 9.30 5.66 36.01 0.20 9.51 16 15 O -0.51 -11.80 12.52 -18.74 -0.23 -12.03 16 16 C -0.01 -0.10 3.19 -92.92 -0.30 -0.39 16 17 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 18 C -0.14 -1.79 9.01 37.16 0.33 -1.46 16 19 C -0.21 -3.17 4.36 -105.05 -0.46 -3.63 16 20 C 0.08 1.35 10.77 -17.36 -0.19 1.16 16 21 N -0.30 -4.82 12.57 30.62 0.39 -4.43 16 22 N -0.38 -4.88 4.01 -68.16 -0.27 -5.15 16 23 C 0.11 0.81 11.47 59.85 0.69 1.49 16 24 C 0.06 0.72 11.38 -17.22 -0.20 0.53 16 25 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 26 H 0.05 1.25 7.80 -51.93 -0.40 0.85 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 29 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 32 H 0.06 0.81 8.02 -51.93 -0.42 0.40 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.18 2.76 8.06 -52.49 -0.42 2.34 16 35 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -33.00 319.61 -5.87 -38.87 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.59 Total: 1.74 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.20 Total: -6.54 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.74 Total: -34.18 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.62 Total: -20.74 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.00 -5.87 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.645 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds