Wall clock time and date at job start Mon Mar 30 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46705 * 2 1 4 4 H 1.09005 * 109.46984 * 304.99560 * 3 2 1 5 5 C 1.50706 * 109.46703 * 185.00172 * 3 2 1 6 6 H 1.07989 * 119.99774 * 239.99913 * 5 3 2 7 7 C 1.37878 * 119.99940 * 60.00249 * 5 3 2 8 8 N 1.31520 * 120.00194 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00067 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47143 * 89.99365 * 9 7 5 11 11 H 1.48499 * 109.47356 * 209.99832 * 9 7 5 12 12 H 1.48499 * 109.47078 * 329.99895 * 9 7 5 13 13 O 1.45190 * 109.47357 * 65.00427 * 3 2 1 14 14 C 1.34238 * 116.99739 * 269.99939 * 13 3 2 15 15 O 1.20819 * 120.00226 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99751 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.47359 * 300.00013 * 16 14 13 18 18 C 1.53001 * 109.47321 * 59.99713 * 16 14 13 19 19 C 1.50700 * 109.46932 * 179.97438 * 16 14 13 20 20 C 1.39870 * 126.04185 * 299.97692 * 19 16 14 21 21 N 1.30839 * 108.19862 * 180.02562 * 20 19 16 22 22 N 1.40079 * 108.20849 * 359.97438 * 21 20 19 23 23 C 1.46502 * 126.03442 * 179.97438 * 22 21 20 24 24 C 1.34948 * 107.92564 * 0.02562 * 22 21 20 25 25 H 1.08998 * 109.46870 * 299.99947 * 1 2 3 26 26 H 1.08996 * 109.47385 * 60.00256 * 1 2 3 27 27 H 1.09000 * 109.46785 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46870 * 240.00053 * 2 1 3 29 29 H 1.08996 * 109.47385 * 119.99744 * 2 1 3 30 30 H 0.96996 * 119.99993 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47422 * 299.99846 * 18 16 14 32 32 H 1.09003 * 109.47114 * 60.00150 * 18 16 14 33 33 H 1.09003 * 109.47265 * 179.97438 * 18 16 14 34 34 H 1.07997 * 125.89658 * 359.97438 * 20 19 16 35 35 H 1.09008 * 109.47064 * 269.99643 * 23 22 21 36 36 H 1.08998 * 109.47431 * 29.99992 * 23 22 21 37 37 H 1.08999 * 109.46741 * 150.00314 * 23 22 21 38 38 H 1.08007 * 126.12251 * 180.26869 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1730 9 14 6.0049 0.8813 -1.3820 10 1 6.5548 -0.3501 -0.7603 11 1 6.3828 0.9225 -2.8175 12 1 6.5569 2.0739 -0.6904 13 8 1.6559 2.0917 1.2406 14 6 0.4727 2.7254 1.2559 15 8 -0.2189 2.7377 0.2653 16 6 0.0075 3.4225 2.5084 17 1 -0.0711 2.6985 3.3194 18 6 1.0140 4.5095 2.8909 19 6 -1.3402 4.0505 2.2626 20 6 -1.6316 5.0240 1.3015 21 7 -2.9029 5.3199 1.3919 22 7 -3.4616 4.5424 2.4145 23 6 -4.8616 4.5628 2.8456 24 6 -2.4823 3.7723 2.9330 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0617 -2.9496 31 1 1.9889 4.0558 3.0685 32 1 1.0925 5.2336 2.0799 33 1 0.6772 5.0141 3.7965 34 1 -0.9285 5.4572 0.6057 35 1 -4.9883 5.3052 3.6337 36 1 -5.4988 4.8190 1.9992 37 1 -5.1392 3.5794 3.2249 38 1 -2.5916 3.0581 3.7358 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787077284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:20 Heat of formation + Delta-G solvation = -39.330604 kcal Electronic energy + Delta-G solvation = -20566.300171 eV Core-core repulsion = 17409.776556 eV Total energy + Delta-G solvation = -3156.523615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.29004 -41.10094 -37.63844 -35.58479 -35.25384 -33.57241 -33.18577 -30.40463 -29.27224 -27.33788 -25.88733 -24.87785 -22.87967 -22.02320 -21.54388 -20.53911 -18.81387 -18.23464 -17.72517 -17.16378 -16.77684 -16.35552 -16.05911 -15.28753 -15.12977 -14.90885 -14.69418 -14.03057 -13.81846 -13.57779 -13.46594 -13.37313 -13.31028 -13.08048 -12.91126 -12.81472 -12.54731 -12.46654 -12.42676 -12.11809 -11.73079 -11.47693 -11.36055 -10.97806 -10.76161 -10.47660 -10.31591 -9.35395 -8.23955 -6.40470 0.95210 1.43143 1.45156 1.54952 1.56775 1.65962 1.74582 2.29046 2.55276 3.05660 3.58923 3.90274 4.02648 4.24520 4.28715 4.36287 4.40358 4.42848 4.45288 4.48620 4.63931 4.71987 4.84066 4.86139 4.89324 5.04824 5.10311 5.17042 5.25853 5.36741 5.44407 5.55791 5.63926 5.72757 6.04883 6.17812 6.24825 6.66411 6.72438 7.15065 7.34031 8.82630 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034678 B = 0.004565 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.226081 B = 6132.273798 C = 6465.897446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.979 3.021 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.265 1.265 13 O -0.362 6.362 14 C 0.446 3.554 15 O -0.540 6.540 16 C 0.007 3.993 17 H 0.136 0.864 18 C -0.132 4.132 19 C -0.242 4.242 20 C 0.062 3.938 21 N -0.338 5.338 22 N -0.380 5.380 23 C 0.094 3.906 24 C 0.078 3.922 25 H 0.039 0.961 26 H 0.029 0.971 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.269 0.731 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 5.357 14.426 19.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.555 5.555 9 Si 0.803 3.197 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.189 1.189 13 O -0.279 6.279 14 C 0.291 3.709 15 O -0.431 6.431 16 C -0.013 4.013 17 H 0.153 0.847 18 C -0.189 4.189 19 C -0.254 4.254 20 C -0.123 4.123 21 N -0.160 5.160 22 N -0.161 5.161 23 C -0.046 4.046 24 C -0.069 4.069 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.183 0.817 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -12.936 5.975 13.515 19.639 hybrid contribution 1.437 -0.558 -0.733 1.707 sum -11.499 5.416 12.783 18.026 Atomic orbital electron populations 1.21680 0.96374 1.00328 0.99996 1.21856 0.94344 0.98292 1.02239 1.20273 0.94341 0.89165 0.78969 0.98056 1.21361 0.90690 1.39624 1.06765 0.91501 1.25801 1.04121 0.94006 0.94414 1.70029 1.37367 1.38138 1.09923 0.85235 0.77909 0.79147 0.77448 1.19187 1.20558 1.18930 1.86454 1.36281 1.63130 1.42015 1.24469 0.79199 0.76014 0.91251 1.90592 1.55890 1.59028 1.37551 1.19233 0.91929 0.97681 0.92454 0.84663 1.21712 0.97870 0.96798 1.02536 1.19594 0.95707 1.05927 1.04136 1.23633 0.93205 0.97140 0.98309 1.77263 1.10034 1.19385 1.09316 1.48791 1.10218 1.30736 1.26394 1.22215 0.74925 1.05776 1.01649 1.22843 0.86869 0.96920 1.00294 0.94147 0.95168 0.92180 0.89879 0.93399 0.92197 0.91376 0.93552 0.88583 0.81735 0.88941 0.89704 0.86546 0.76497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.57 71.98 0.62 -5.04 16 2 C -0.13 -6.59 5.49 30.60 0.17 -6.42 16 3 C 0.23 12.43 2.25 29.85 0.07 12.49 16 4 H 0.00 0.10 7.16 -2.38 -0.02 0.09 16 5 C -0.55 -31.23 8.90 25.60 0.23 -31.00 16 6 H 0.07 3.73 7.81 -2.92 -0.02 3.71 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -53.23 11.29 21.45 0.24 -52.98 16 9 Si 0.98 43.22 29.54 68.60 2.03 45.24 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 O -0.36 -17.22 9.71 -51.49 -0.50 -17.72 16 14 C 0.45 18.50 5.66 71.24 0.40 18.90 16 15 O -0.54 -25.90 12.52 21.98 0.28 -25.62 16 16 C 0.01 0.20 3.19 -12.29 -0.04 0.17 16 17 H 0.14 2.99 8.11 -2.39 -0.02 2.97 16 18 C -0.13 -3.31 9.01 71.98 0.65 -2.66 16 19 C -0.24 -6.82 4.36 -20.14 -0.09 -6.90 16 20 C 0.06 2.03 10.77 85.24 0.92 2.95 16 21 N -0.34 -10.64 12.57 -57.02 -0.72 -11.36 16 22 N -0.38 -8.76 4.01 -369.55 -1.48 -10.24 16 23 C 0.09 1.13 11.47 127.77 1.47 2.59 16 24 C 0.08 1.67 11.38 83.54 0.95 2.62 16 25 H 0.04 1.71 6.06 -2.39 -0.01 1.69 16 26 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.08 4.65 5.95 -2.39 -0.01 4.64 16 29 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.07 1.78 8.11 -2.39 -0.02 1.77 16 32 H 0.05 1.27 8.02 -2.39 -0.02 1.25 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.17 5.52 8.06 -2.91 -0.02 5.50 16 35 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.22 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -74.69 319.61 6.67 -68.02 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.04 Total: 15.62 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 5.79 Total: -10.96 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.96 Total: -74.58 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.22 Total: -43.34 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -74.69 6.67 -68.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.688 kcal (2) G-P(sol) polarization free energy of solvation -74.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds