Wall clock time and date at job start Mon Mar 30 2020 05:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47535 * 55.00249 * 3 2 1 5 5 C 1.50699 * 109.46930 * 174.99875 * 3 2 1 6 6 H 1.08010 * 120.00260 * 119.99886 * 5 3 2 7 7 C 1.37880 * 120.00088 * 299.99950 * 5 3 2 8 8 N 1.31513 * 119.99908 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99899 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46637 * 120.00050 * 9 7 5 12 12 H 1.48498 * 109.46895 * 239.99944 * 9 7 5 13 13 O 1.45203 * 109.47450 * 294.99817 * 3 2 1 14 14 C 1.34219 * 117.00018 * 89.99615 * 13 3 2 15 15 O 1.20826 * 120.00089 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00226 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47066 * 60.00624 * 16 14 13 18 18 C 1.53006 * 109.47239 * 300.00732 * 16 14 13 19 19 C 1.50698 * 109.47576 * 180.02562 * 16 14 13 20 20 C 1.39874 * 126.03590 * 59.69561 * 19 16 14 21 21 N 1.30845 * 108.20145 * 179.82222 * 20 19 16 22 22 N 1.40085 * 108.20214 * 0.43351 * 21 20 19 23 23 C 1.46503 * 126.03450 * 179.74323 * 22 21 20 24 24 C 1.34944 * 107.92752 * 359.72141 * 22 21 20 25 25 H 1.08998 * 109.46423 * 60.00173 * 1 2 3 26 26 H 1.09003 * 109.46752 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.46999 * 300.00110 * 1 2 3 28 28 H 1.09000 * 109.46904 * 239.99924 * 2 1 3 29 29 H 1.09002 * 109.46857 * 120.00434 * 2 1 3 30 30 H 0.97002 * 119.99847 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46998 * 299.99373 * 18 16 14 32 32 H 1.09000 * 109.47050 * 59.99664 * 18 16 14 33 33 H 1.09001 * 109.46801 * 179.97438 * 18 16 14 34 34 H 1.08000 * 125.90133 * 359.97438 * 20 19 16 35 35 H 1.08994 * 109.46797 * 269.97270 * 23 22 21 36 36 H 1.08999 * 109.47084 * 29.97551 * 23 22 21 37 37 H 1.09007 * 109.46694 * 149.97492 * 23 22 21 38 38 H 1.07997 * 126.13095 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0051 0.8799 1.3812 10 1 6.5988 1.5451 0.1938 11 1 6.4000 1.6156 2.6092 12 1 6.4962 -0.5191 1.4627 13 8 1.6560 2.0917 -1.2407 14 6 0.4729 2.7253 -1.2560 15 8 -0.2188 2.7376 -0.2654 16 6 0.0071 3.4215 -2.5088 17 1 -0.0719 2.6969 -3.3192 18 6 1.0135 4.5082 -2.8926 19 6 -1.3405 4.0497 -2.2630 20 6 -1.6327 5.0194 -1.2982 21 7 -2.9029 5.3194 -1.3919 22 7 -3.4619 4.5417 -2.4142 23 6 -4.8621 4.5616 -2.8446 24 6 -2.4828 3.7713 -2.9328 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0613 2.9499 31 1 1.0924 5.2329 -2.0822 32 1 1.9884 4.0542 -3.0702 33 1 0.6768 5.0115 -3.7989 34 1 -0.9307 5.4483 -0.5985 35 1 -5.4291 3.8289 -2.2705 36 1 -5.2792 5.5549 -2.6787 37 1 -4.9197 4.3159 -3.9051 38 1 -2.5913 3.0602 -3.7383 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787077285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:23 Heat of formation + Delta-G solvation = -19.248631 kcal Electronic energy + Delta-G solvation = -20565.935192 eV Core-core repulsion = 17410.282396 eV Total energy + Delta-G solvation = -3155.652795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20027 -39.42509 -35.86188 -34.22905 -33.41744 -32.48801 -31.26082 -29.38066 -27.25980 -26.48044 -24.40331 -23.05965 -21.38210 -20.98935 -19.88272 -19.06072 -17.04995 -16.52948 -16.41199 -15.46421 -15.39758 -14.96830 -14.52078 -14.15712 -13.92960 -13.26423 -12.92258 -12.85833 -12.77635 -12.57961 -12.11464 -12.05949 -11.54452 -11.40159 -11.28911 -11.16233 -11.06897 -10.91029 -10.58589 -10.38241 -10.23028 -9.73174 -9.43484 -9.32550 -9.19607 -8.72827 -8.41207 -8.30147 -6.14454 -4.21096 1.94786 2.56748 2.88798 3.17656 3.25799 3.32939 3.37927 3.92303 4.37584 4.49907 4.83451 4.99636 5.05417 5.17496 5.20759 5.23996 5.38404 5.50022 5.78069 5.82269 6.00332 6.09723 6.25685 6.28433 6.34980 6.43660 6.52152 6.76241 6.92796 7.02568 7.05426 7.23038 7.35229 7.67187 7.79296 7.80135 8.03810 8.22598 8.74245 8.99919 9.44358 10.92302 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.004565 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.034409 B = 6132.173336 C = 6465.444840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.519 4.519 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.509 6.509 16 C -0.007 4.007 17 H 0.103 0.897 18 C -0.136 4.136 19 C -0.214 4.214 20 C 0.084 3.916 21 N -0.304 5.304 22 N -0.383 5.383 23 C 0.105 3.895 24 C 0.059 3.941 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.107 0.893 30 H 0.265 0.735 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.180 0.820 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 5.963 -12.012 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.273 6.273 14 C 0.296 3.704 15 O -0.398 6.398 16 C -0.027 4.027 17 H 0.121 0.879 18 C -0.194 4.194 19 C -0.226 4.226 20 C -0.102 4.102 21 N -0.125 5.125 22 N -0.165 5.165 23 C -0.036 4.036 24 C -0.087 4.087 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.197 0.803 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.356 6.561 -11.099 17.858 hybrid contribution 1.417 -0.779 0.004 1.617 sum -10.940 5.782 -11.095 16.619 Atomic orbital electron populations 1.21844 0.98420 0.98781 1.00784 1.22012 0.92571 0.99533 1.03224 1.20620 0.94872 0.88684 0.78945 0.93617 1.21098 0.89812 1.38648 1.06113 0.91304 1.24887 0.99117 0.94860 0.95134 1.69906 1.35218 1.38015 1.09484 0.86260 0.84103 0.77829 0.78193 1.19474 1.20814 1.20784 1.86457 1.34392 1.62540 1.43865 1.23209 0.80681 0.76984 0.89570 1.90606 1.55354 1.58109 1.35772 1.19144 0.91449 0.97173 0.94942 0.87917 1.21710 0.98535 0.97522 1.01588 1.19541 0.94874 1.05249 1.02933 1.23662 0.92906 0.96108 0.97531 1.77350 1.10007 1.17670 1.07469 1.48352 1.08480 1.31780 1.27886 1.21778 0.77510 1.04150 1.00186 1.22195 0.88153 0.97656 1.00720 0.94913 0.95034 0.92909 0.94071 0.87472 0.92527 0.92184 0.90760 0.91876 0.80317 0.90979 0.89533 0.89737 0.81055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.57 37.16 0.32 -2.84 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.88 2.25 -27.89 -0.06 5.82 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.48 8.90 -34.44 -0.31 -14.78 16 6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.21 11.29 55.43 0.63 -24.59 16 9 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 O -0.36 -8.33 9.71 -39.23 -0.38 -8.71 16 14 C 0.45 9.30 5.66 36.00 0.20 9.51 16 15 O -0.51 -11.80 12.51 -18.75 -0.23 -12.04 16 16 C -0.01 -0.10 3.19 -92.92 -0.30 -0.39 16 17 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 18 C -0.14 -1.79 9.02 37.16 0.34 -1.46 16 19 C -0.21 -3.18 4.37 -105.05 -0.46 -3.64 16 20 C 0.08 1.35 10.76 -17.36 -0.19 1.16 16 21 N -0.30 -4.82 12.58 30.63 0.39 -4.44 16 22 N -0.38 -4.88 4.01 -68.16 -0.27 -5.15 16 23 C 0.11 0.80 11.47 59.85 0.69 1.49 16 24 C 0.06 0.73 11.38 -17.22 -0.20 0.53 16 25 H 0.03 0.70 6.06 -51.93 -0.31 0.39 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 1.25 7.80 -51.93 -0.40 0.85 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.06 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.18 2.77 8.06 -52.49 -0.42 2.34 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 319.60 15.07 4.82 4.82 Total: -1.00 -33.03 319.60 -5.87 -38.91 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.59 Total: 1.71 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.20 Total: -6.53 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.74 Total: -34.18 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.62 Total: -20.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.03 -5.87 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.658 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds