Wall clock time and date at job start Mon Mar 30 2020 05:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47535 * 55.00249 * 3 2 1 5 5 C 1.50699 * 109.46930 * 174.99875 * 3 2 1 6 6 H 1.08010 * 120.00260 * 119.99886 * 5 3 2 7 7 C 1.37880 * 120.00088 * 299.99950 * 5 3 2 8 8 N 1.31513 * 119.99908 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99899 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46637 * 120.00050 * 9 7 5 12 12 H 1.48498 * 109.46895 * 239.99944 * 9 7 5 13 13 O 1.45203 * 109.47450 * 294.99817 * 3 2 1 14 14 C 1.34219 * 117.00018 * 89.99615 * 13 3 2 15 15 O 1.20826 * 120.00089 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00226 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.47066 * 60.00624 * 16 14 13 18 18 C 1.53006 * 109.47239 * 300.00732 * 16 14 13 19 19 C 1.50698 * 109.47576 * 180.02562 * 16 14 13 20 20 C 1.39874 * 126.03590 * 59.69561 * 19 16 14 21 21 N 1.30845 * 108.20145 * 179.82222 * 20 19 16 22 22 N 1.40085 * 108.20214 * 0.43351 * 21 20 19 23 23 C 1.46503 * 126.03450 * 179.74323 * 22 21 20 24 24 C 1.34944 * 107.92752 * 359.72141 * 22 21 20 25 25 H 1.08998 * 109.46423 * 60.00173 * 1 2 3 26 26 H 1.09003 * 109.46752 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.46999 * 300.00110 * 1 2 3 28 28 H 1.09000 * 109.46904 * 239.99924 * 2 1 3 29 29 H 1.09002 * 109.46857 * 120.00434 * 2 1 3 30 30 H 0.97002 * 119.99847 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46998 * 299.99373 * 18 16 14 32 32 H 1.09000 * 109.47050 * 59.99664 * 18 16 14 33 33 H 1.09001 * 109.46801 * 179.97438 * 18 16 14 34 34 H 1.08000 * 125.90133 * 359.97438 * 20 19 16 35 35 H 1.08994 * 109.46797 * 269.97270 * 23 22 21 36 36 H 1.08999 * 109.47084 * 29.97551 * 23 22 21 37 37 H 1.09007 * 109.46694 * 149.97492 * 23 22 21 38 38 H 1.07997 * 126.13095 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0051 0.8799 1.3812 10 1 6.5988 1.5451 0.1938 11 1 6.4000 1.6156 2.6092 12 1 6.4962 -0.5191 1.4627 13 8 1.6560 2.0917 -1.2407 14 6 0.4729 2.7253 -1.2560 15 8 -0.2188 2.7376 -0.2654 16 6 0.0071 3.4215 -2.5088 17 1 -0.0719 2.6969 -3.3192 18 6 1.0135 4.5082 -2.8926 19 6 -1.3405 4.0497 -2.2630 20 6 -1.6327 5.0194 -1.2982 21 7 -2.9029 5.3194 -1.3919 22 7 -3.4619 4.5417 -2.4142 23 6 -4.8621 4.5616 -2.8446 24 6 -2.4828 3.7713 -2.9328 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0613 2.9499 31 1 1.0924 5.2329 -2.0822 32 1 1.9884 4.0542 -3.0702 33 1 0.6768 5.0115 -3.7989 34 1 -0.9307 5.4483 -0.5985 35 1 -5.4291 3.8289 -2.2705 36 1 -5.2792 5.5549 -2.6787 37 1 -4.9197 4.3159 -3.9051 38 1 -2.5913 3.0602 -3.7383 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787077285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:23 Heat of formation + Delta-G solvation = -39.398138 kcal Electronic energy + Delta-G solvation = -20566.808940 eV Core-core repulsion = 17410.282396 eV Total energy + Delta-G solvation = -3156.526544 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.28946 -41.10204 -37.63903 -35.58509 -35.25427 -33.57287 -33.18720 -30.40434 -29.27438 -27.33853 -25.88687 -24.87837 -22.88021 -22.02406 -21.54416 -20.53966 -18.81566 -18.23486 -17.72691 -17.16526 -16.77551 -16.34800 -16.07875 -15.28175 -15.12756 -14.90841 -14.69644 -14.02139 -13.81930 -13.58166 -13.46723 -13.37949 -13.31728 -13.07016 -12.91444 -12.82141 -12.55734 -12.46151 -12.42766 -12.10146 -11.72528 -11.47892 -11.36453 -10.97979 -10.75344 -10.48489 -10.31677 -9.35518 -8.24227 -6.40590 0.95138 1.43207 1.43659 1.55232 1.57679 1.66464 1.74131 2.29034 2.55211 3.05512 3.59204 3.90248 4.02852 4.25049 4.28760 4.36422 4.40302 4.42752 4.44988 4.47653 4.63819 4.72034 4.84241 4.86371 4.89273 5.04922 5.10194 5.17133 5.25734 5.36853 5.44323 5.55875 5.63899 5.72625 6.04784 6.17841 6.24725 6.66516 6.72395 7.15002 7.33951 8.82594 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.004565 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.034409 B = 6132.173336 C = 6465.444840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.979 3.021 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.272 1.272 13 O -0.362 6.362 14 C 0.446 3.554 15 O -0.541 6.541 16 C 0.007 3.993 17 H 0.136 0.864 18 C -0.132 4.132 19 C -0.242 4.242 20 C 0.063 3.937 21 N -0.338 5.338 22 N -0.380 5.380 23 C 0.094 3.906 24 C 0.078 3.922 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.269 0.731 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 5.468 -14.548 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.019 0.981 5 C -0.583 4.583 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.803 3.197 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.197 1.197 13 O -0.279 6.279 14 C 0.291 3.709 15 O -0.431 6.431 16 C -0.013 4.013 17 H 0.153 0.847 18 C -0.189 4.189 19 C -0.254 4.254 20 C -0.123 4.123 21 N -0.160 5.160 22 N -0.161 5.161 23 C -0.046 4.046 24 C -0.069 4.069 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.182 0.818 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.141 0.859 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -12.900 6.087 -13.646 19.740 hybrid contribution 1.423 -0.585 0.779 1.725 sum -11.476 5.502 -12.867 18.098 Atomic orbital electron populations 1.21680 0.96384 1.00325 0.99991 1.21854 0.94334 0.98289 1.02248 1.20277 0.94361 0.89168 0.78965 0.98057 1.21392 0.90676 1.39522 1.06743 0.91502 1.25803 1.04121 0.94001 0.94440 1.70035 1.37306 1.38217 1.09911 0.85186 0.77920 0.78259 0.78355 1.18601 1.20391 1.19741 1.86453 1.36281 1.63115 1.42021 1.24470 0.79201 0.76011 0.91261 1.90594 1.55900 1.59033 1.37567 1.19233 0.91933 0.97695 0.92436 0.84662 1.21712 0.97858 0.96797 1.02534 1.19599 0.95678 1.06016 1.04082 1.23635 0.93202 0.97185 0.98249 1.77268 1.10041 1.19345 1.09357 1.48791 1.10188 1.30635 1.26525 1.22218 0.74909 1.04861 1.02579 1.22845 0.86818 0.96816 1.00433 0.94147 0.92181 0.95181 0.93378 0.89880 0.92203 0.93548 0.91391 0.88563 0.81751 0.90169 0.89158 0.85875 0.76478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.57 71.98 0.62 -5.05 16 2 C -0.13 -6.59 5.49 30.60 0.17 -6.42 16 3 C 0.23 12.42 2.25 29.85 0.07 12.48 16 4 H 0.00 0.10 7.16 -2.39 -0.02 0.08 16 5 C -0.55 -31.16 8.90 25.60 0.23 -30.94 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.71 16 7 C 0.02 0.87 5.29 84.66 0.45 1.32 16 8 N -0.92 -53.22 11.29 21.45 0.24 -52.97 16 9 Si 0.98 43.23 29.54 68.60 2.03 45.26 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 O -0.36 -17.22 9.71 -51.31 -0.50 -17.72 16 14 C 0.45 18.50 5.66 71.23 0.40 18.90 16 15 O -0.54 -25.93 12.51 21.97 0.27 -25.65 16 16 C 0.01 0.20 3.19 -12.29 -0.04 0.17 16 17 H 0.14 2.99 8.11 -2.39 -0.02 2.97 16 18 C -0.13 -3.30 9.02 71.98 0.65 -2.65 16 19 C -0.24 -6.82 4.37 -20.14 -0.09 -6.91 16 20 C 0.06 2.04 10.76 85.24 0.92 2.96 16 21 N -0.34 -10.65 12.58 -57.02 -0.72 -11.36 16 22 N -0.38 -8.76 4.01 -369.56 -1.48 -10.24 16 23 C 0.09 1.13 11.47 127.77 1.47 2.59 16 24 C 0.08 1.67 11.38 83.54 0.95 2.62 16 25 H 0.04 1.71 6.06 -2.39 -0.01 1.70 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.03 1.44 7.80 -2.39 -0.02 1.43 16 28 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.08 4.65 5.95 -2.39 -0.01 4.64 16 30 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.05 1.27 8.03 -2.39 -0.02 1.25 16 32 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.17 5.53 8.06 -2.91 -0.02 5.51 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.22 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -74.82 319.60 6.67 -68.15 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.04 Total: 15.45 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 5.79 Total: -10.91 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.96 Total: -74.58 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.22 Total: -43.37 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.82 6.67 -68.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.750 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds