Wall clock time and date at job start Mon Mar 30 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46679 * 2 1 4 4 H 1.08996 * 109.47330 * 305.10821 * 3 2 1 5 5 C 1.50706 * 109.46893 * 185.11113 * 3 2 1 6 6 H 1.07998 * 120.00248 * 245.45238 * 5 3 2 7 7 C 1.37883 * 119.99872 * 65.45265 * 5 3 2 8 8 N 1.31523 * 119.99641 * 9.50057 * 7 5 3 9 9 Si 1.86797 * 120.00289 * 189.50092 * 7 5 3 10 10 H 1.48498 * 109.47195 * 84.99010 * 9 7 5 11 11 H 1.48494 * 109.47415 * 204.99509 * 9 7 5 12 12 H 1.48507 * 109.46716 * 324.99473 * 9 7 5 13 13 O 1.45194 * 109.47668 * 65.11655 * 3 2 1 14 14 C 1.34231 * 116.99994 * 269.99831 * 13 3 2 15 15 O 1.20826 * 119.99894 * 359.97438 * 14 13 3 16 16 C 1.50704 * 120.00323 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.46814 * 59.99763 * 16 14 13 18 18 C 1.53004 * 109.46849 * 300.00130 * 16 14 13 19 19 C 1.50698 * 109.46952 * 179.97438 * 16 14 13 20 20 C 1.39867 * 126.04080 * 59.69590 * 19 16 14 21 21 N 1.30840 * 108.20307 * 179.81221 * 20 19 16 22 22 N 1.40079 * 108.20120 * 0.43983 * 21 20 19 23 23 C 1.46510 * 126.03474 * 179.73663 * 22 21 20 24 24 C 1.34945 * 107.93257 * 359.71538 * 22 21 20 25 25 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47548 * 299.99946 * 1 2 3 27 27 H 1.09001 * 109.47430 * 60.00341 * 1 2 3 28 28 H 1.08994 * 109.46902 * 239.99797 * 2 1 3 29 29 H 1.09000 * 109.46691 * 119.99745 * 2 1 3 30 30 H 0.96998 * 119.99655 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47112 * 299.99450 * 18 16 14 32 32 H 1.08998 * 109.47236 * 59.99878 * 18 16 14 33 33 H 1.09004 * 109.46739 * 180.02562 * 18 16 14 34 34 H 1.08006 * 125.89934 * 359.97438 * 20 19 16 35 35 H 1.08999 * 109.46751 * 269.97524 * 23 22 21 36 36 H 1.08997 * 109.46915 * 29.97651 * 23 22 21 37 37 H 1.09001 * 109.46932 * 149.97474 * 23 22 21 38 38 H 1.07994 * 126.13072 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6038 1.9820 -0.8407 5 6 3.5416 1.4444 -0.1266 6 1 4.1517 1.8083 0.6869 7 6 4.1367 0.9817 -1.2811 8 7 3.4015 0.7150 -2.3385 9 14 5.9871 0.7337 -1.3434 10 1 6.3254 -0.6067 -0.8010 11 1 6.4524 0.8302 -2.7502 12 1 6.6545 1.7804 -0.5283 13 8 1.6582 2.0909 1.2418 14 6 0.4750 2.7246 1.2597 15 8 -0.2185 2.7375 0.2703 16 6 0.0116 3.4201 2.5138 17 1 0.7290 4.1941 2.7863 18 6 -0.0971 2.4022 3.6509 19 6 -1.3365 4.0484 2.2708 20 6 -2.5033 3.3741 1.8966 21 7 -3.4657 4.2534 1.7852 22 7 -2.9385 5.5183 2.0757 23 6 -3.6768 6.7837 2.0623 24 6 -1.6305 5.3655 2.3706 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8202 0.3898 -3.1508 31 1 -0.8146 1.6282 3.3784 32 1 0.8781 1.9481 3.8265 33 1 -0.4327 2.9051 4.5579 34 1 -2.5948 2.3107 1.7309 35 1 -3.6214 7.2260 1.0676 36 1 -4.7196 6.5986 2.3201 37 1 -3.2387 7.4677 2.7891 38 1 -0.9420 6.1531 2.6385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787077287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:26 Heat of formation + Delta-G solvation = -20.671920 kcal Electronic energy + Delta-G solvation = -20587.324982 eV Core-core repulsion = 17431.610468 eV Total energy + Delta-G solvation = -3155.714514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.20045 -39.42668 -35.85015 -34.22595 -33.37281 -32.48514 -31.37786 -29.39938 -27.22988 -26.48058 -24.41137 -23.08278 -21.36903 -21.00497 -19.93009 -19.05323 -17.03877 -16.58729 -16.37510 -15.46149 -15.36446 -14.98060 -14.48868 -14.15861 -14.03864 -13.02273 -13.01345 -12.84731 -12.82509 -12.59861 -12.44479 -11.73915 -11.53228 -11.52617 -11.39064 -11.12942 -11.08470 -10.92861 -10.60656 -10.37903 -10.22558 -9.79271 -9.44872 -9.31408 -9.20408 -8.75898 -8.41426 -8.30168 -6.16251 -4.19662 1.95229 2.57073 2.88565 3.18317 3.27409 3.32968 3.35958 3.92056 4.38286 4.50277 4.84740 5.00456 5.05298 5.16492 5.20488 5.24537 5.37950 5.48365 5.76427 5.81827 5.99467 6.07285 6.21869 6.24180 6.32464 6.40376 6.47222 6.75910 6.89061 7.02115 7.05201 7.19299 7.29615 7.63502 7.74625 7.79311 7.96471 8.21080 8.74913 9.00744 9.44514 10.92699 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032129 B = 0.004512 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.266569 B = 6204.279771 C = 6312.310283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.052 0.948 5 C -0.524 4.524 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.906 3.094 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.272 1.272 13 O -0.356 6.356 14 C 0.453 3.547 15 O -0.509 6.509 16 C -0.007 4.007 17 H 0.104 0.896 18 C -0.136 4.136 19 C -0.215 4.215 20 C 0.084 3.916 21 N -0.304 5.304 22 N -0.383 5.383 23 C 0.105 3.895 24 C 0.059 3.941 25 H 0.032 0.968 26 H 0.036 0.964 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.266 0.734 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.179 0.821 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 8.405 11.300 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.070 0.930 5 C -0.562 4.562 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.273 6.273 14 C 0.295 3.705 15 O -0.398 6.398 16 C -0.028 4.028 17 H 0.122 0.878 18 C -0.193 4.193 19 C -0.227 4.227 20 C -0.102 4.102 21 N -0.125 5.125 22 N -0.165 5.165 23 C -0.036 4.036 24 C -0.086 4.086 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.196 0.804 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.030 8.659 10.501 17.519 hybrid contribution 1.798 -0.253 -0.223 1.829 sum -9.232 8.406 10.279 16.172 Atomic orbital electron populations 1.21862 0.98075 0.99002 1.01110 1.21900 0.92992 0.99493 1.02097 1.20617 0.95005 0.88516 0.79177 0.92982 1.21006 0.89732 1.43690 1.01746 0.91384 1.24895 0.98953 0.95249 0.94678 1.69999 1.35898 1.44141 1.02195 0.86386 0.84254 0.78884 0.77197 1.20266 1.21141 1.19696 1.86455 1.34428 1.62586 1.43788 1.23218 0.80749 0.77070 0.89428 1.90609 1.55366 1.57957 1.35827 1.19145 0.93104 0.97913 0.92588 0.87779 1.21708 1.03181 0.98065 0.96355 1.19536 0.95923 0.92613 1.14579 1.23629 0.90091 0.99595 0.96906 1.77340 1.22972 0.88018 1.24189 1.48353 1.07315 1.06804 1.54002 1.21783 0.97706 0.81108 1.03037 1.22214 0.86673 0.97845 1.01907 0.94876 0.94505 0.92715 0.89463 0.93709 0.92467 0.92313 0.90833 0.91819 0.80422 0.90951 0.89542 0.89716 0.80990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.57 37.16 0.32 -2.78 16 2 C -0.13 -3.10 5.54 -26.73 -0.15 -3.25 16 3 C 0.22 5.82 2.11 -27.88 -0.06 5.76 16 4 H 0.05 1.56 7.10 -51.93 -0.37 1.19 16 5 C -0.52 -14.66 8.82 -34.44 -0.30 -14.97 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C 0.07 1.79 5.16 -17.81 -0.09 1.70 16 8 N -0.89 -25.42 12.16 55.43 0.67 -24.75 16 9 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 O -0.36 -8.31 9.71 -39.26 -0.38 -8.69 16 14 C 0.45 9.29 5.67 36.01 0.20 9.50 16 15 O -0.51 -11.81 12.51 -18.75 -0.23 -12.04 16 16 C -0.01 -0.10 3.19 -92.92 -0.30 -0.40 16 17 H 0.10 1.36 8.11 -51.93 -0.42 0.94 16 18 C -0.14 -1.73 9.02 37.16 0.34 -1.40 16 19 C -0.21 -3.18 4.37 -105.05 -0.46 -3.64 16 20 C 0.08 1.34 10.77 -17.36 -0.19 1.15 16 21 N -0.30 -4.81 12.58 30.63 0.39 -4.42 16 22 N -0.38 -4.90 4.01 -68.16 -0.27 -5.17 16 23 C 0.11 0.81 11.47 59.85 0.69 1.50 16 24 C 0.06 0.74 11.38 -17.22 -0.20 0.55 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.75 6.06 -51.93 -0.31 0.44 16 27 H 0.05 1.26 7.80 -51.93 -0.41 0.86 16 28 H 0.09 2.31 6.80 -51.93 -0.35 1.96 16 29 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.06 0.76 8.03 -51.93 -0.42 0.34 16 32 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.18 2.70 8.06 -52.48 -0.42 2.28 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -33.30 321.02 -5.84 -39.14 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.63 Total: 1.33 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -0.20 Total: -6.28 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.79 Total: -34.35 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.62 Total: -20.73 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.30 -5.84 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.464 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds