Wall clock time and date at job start Mon Mar 30 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46679 * 2 1 4 4 H 1.08996 * 109.47330 * 305.10821 * 3 2 1 5 5 C 1.50706 * 109.46893 * 185.11113 * 3 2 1 6 6 H 1.07998 * 120.00248 * 245.45238 * 5 3 2 7 7 C 1.37883 * 119.99872 * 65.45265 * 5 3 2 8 8 N 1.31523 * 119.99641 * 9.50057 * 7 5 3 9 9 Si 1.86797 * 120.00289 * 189.50092 * 7 5 3 10 10 H 1.48498 * 109.47195 * 84.99010 * 9 7 5 11 11 H 1.48494 * 109.47415 * 204.99509 * 9 7 5 12 12 H 1.48507 * 109.46716 * 324.99473 * 9 7 5 13 13 O 1.45194 * 109.47668 * 65.11655 * 3 2 1 14 14 C 1.34231 * 116.99994 * 269.99831 * 13 3 2 15 15 O 1.20826 * 119.99894 * 359.97438 * 14 13 3 16 16 C 1.50704 * 120.00323 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.46814 * 59.99763 * 16 14 13 18 18 C 1.53004 * 109.46849 * 300.00130 * 16 14 13 19 19 C 1.50698 * 109.46952 * 179.97438 * 16 14 13 20 20 C 1.39867 * 126.04080 * 59.69590 * 19 16 14 21 21 N 1.30840 * 108.20307 * 179.81221 * 20 19 16 22 22 N 1.40079 * 108.20120 * 0.43983 * 21 20 19 23 23 C 1.46510 * 126.03474 * 179.73663 * 22 21 20 24 24 C 1.34945 * 107.93257 * 359.71538 * 22 21 20 25 25 H 1.09001 * 109.46935 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47548 * 299.99946 * 1 2 3 27 27 H 1.09001 * 109.47430 * 60.00341 * 1 2 3 28 28 H 1.08994 * 109.46902 * 239.99797 * 2 1 3 29 29 H 1.09000 * 109.46691 * 119.99745 * 2 1 3 30 30 H 0.96998 * 119.99655 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47112 * 299.99450 * 18 16 14 32 32 H 1.08998 * 109.47236 * 59.99878 * 18 16 14 33 33 H 1.09004 * 109.46739 * 180.02562 * 18 16 14 34 34 H 1.08006 * 125.89934 * 359.97438 * 20 19 16 35 35 H 1.08999 * 109.46751 * 269.97524 * 23 22 21 36 36 H 1.08997 * 109.46915 * 29.97651 * 23 22 21 37 37 H 1.09001 * 109.46932 * 149.97474 * 23 22 21 38 38 H 1.07994 * 126.13072 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6038 1.9820 -0.8407 5 6 3.5416 1.4444 -0.1266 6 1 4.1517 1.8083 0.6869 7 6 4.1367 0.9817 -1.2811 8 7 3.4015 0.7150 -2.3385 9 14 5.9871 0.7337 -1.3434 10 1 6.3254 -0.6067 -0.8010 11 1 6.4524 0.8302 -2.7502 12 1 6.6545 1.7804 -0.5283 13 8 1.6582 2.0909 1.2418 14 6 0.4750 2.7246 1.2597 15 8 -0.2185 2.7375 0.2703 16 6 0.0116 3.4201 2.5138 17 1 0.7290 4.1941 2.7863 18 6 -0.0971 2.4022 3.6509 19 6 -1.3365 4.0484 2.2708 20 6 -2.5033 3.3741 1.8966 21 7 -3.4657 4.2534 1.7852 22 7 -2.9385 5.5183 2.0757 23 6 -3.6768 6.7837 2.0623 24 6 -1.6305 5.3655 2.3706 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8202 0.3898 -3.1508 31 1 -0.8146 1.6282 3.3784 32 1 0.8781 1.9481 3.8265 33 1 -0.4327 2.9051 4.5579 34 1 -2.5948 2.3107 1.7309 35 1 -3.6214 7.2260 1.0676 36 1 -4.7196 6.5986 2.3201 37 1 -3.2387 7.4677 2.7891 38 1 -0.9420 6.1531 2.6385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787077287.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:26 Heat of formation + Delta-G solvation = -41.093098 kcal Electronic energy + Delta-G solvation = -20588.210510 eV Core-core repulsion = 17431.610468 eV Total energy + Delta-G solvation = -3156.600043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.28879 -41.09921 -37.62281 -35.54930 -35.22975 -33.59325 -33.27014 -30.42344 -29.23147 -27.33861 -25.85369 -24.91531 -22.86710 -22.04138 -21.56910 -20.52643 -18.78232 -18.30242 -17.71585 -17.02356 -16.89623 -16.33974 -16.05420 -15.32459 -15.18636 -14.72862 -14.66662 -14.24158 -13.77046 -13.59673 -13.43291 -13.37017 -13.31580 -13.06448 -12.98496 -12.73984 -12.57202 -12.48969 -12.40829 -12.11769 -11.74615 -11.47793 -11.37259 -10.97692 -10.74810 -10.51117 -10.31830 -9.35316 -8.26990 -6.39973 0.95009 1.42779 1.45446 1.54737 1.56846 1.66866 1.74213 2.29012 2.55346 3.04307 3.59660 3.89084 4.02973 4.24745 4.29758 4.37559 4.39552 4.40382 4.44815 4.47169 4.62080 4.71514 4.84653 4.87288 4.89316 5.05961 5.10911 5.17539 5.24770 5.37183 5.41224 5.55978 5.64219 5.66120 5.96878 6.17213 6.24922 6.67446 6.72771 7.15265 7.33836 8.82351 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032129 B = 0.004512 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.266569 B = 6204.279771 C = 6312.310283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.224 3.776 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.977 3.023 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.263 1.263 13 O -0.362 6.362 14 C 0.446 3.554 15 O -0.541 6.541 16 C 0.006 3.994 17 H 0.131 0.869 18 C -0.130 4.130 19 C -0.243 4.243 20 C 0.065 3.935 21 N -0.338 5.338 22 N -0.380 5.380 23 C 0.094 3.906 24 C 0.075 3.925 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.269 0.731 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.907 9.741 13.193 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.171 3.829 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.188 1.188 13 O -0.278 6.278 14 C 0.291 3.709 15 O -0.431 6.431 16 C -0.014 4.014 17 H 0.149 0.851 18 C -0.188 4.188 19 C -0.254 4.254 20 C -0.120 4.120 21 N -0.160 5.160 22 N -0.162 5.162 23 C -0.046 4.046 24 C -0.072 4.072 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.186 0.814 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.432 10.006 12.414 19.054 hybrid contribution 1.490 -0.541 -0.822 1.785 sum -8.942 9.465 11.592 17.433 Atomic orbital electron populations 1.21708 0.96081 1.00590 1.00312 1.21743 0.94699 0.98094 1.01245 1.20277 0.94434 0.89131 0.79102 0.97629 1.21327 0.90637 1.44518 1.02211 0.91425 1.25820 1.04003 0.94402 0.93964 1.70129 1.38091 1.44537 1.02787 0.85290 0.77997 0.79309 0.77410 1.19134 1.20680 1.18754 1.86449 1.36263 1.63172 1.41954 1.24474 0.79248 0.76155 0.91061 1.90598 1.55841 1.58982 1.37658 1.19237 0.93776 0.98466 0.89932 0.85088 1.21712 1.02856 0.97594 0.96605 1.19613 0.95283 0.93743 1.16782 1.23645 0.91021 0.99609 0.97731 1.77259 1.23778 0.89517 1.25433 1.48785 1.07892 1.07115 1.52416 1.22211 0.98051 0.79583 1.04711 1.22847 0.86961 0.97910 0.99479 0.91978 0.93725 0.95053 0.91929 0.92681 0.92237 0.93110 0.91229 0.88705 0.81392 0.90270 0.89057 0.85955 0.76716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.57 71.98 0.62 -5.10 16 2 C -0.12 -6.00 5.54 30.59 0.17 -5.83 16 3 C 0.22 12.28 2.11 29.85 0.06 12.34 16 4 H 0.01 0.37 7.10 -2.39 -0.02 0.35 16 5 C -0.55 -31.32 8.82 25.60 0.23 -31.09 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 7 C 0.02 1.01 5.16 84.65 0.44 1.44 16 8 N -0.92 -54.02 12.16 21.45 0.26 -53.76 16 9 Si 0.98 43.12 29.55 68.60 2.03 45.15 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 O -0.36 -17.13 9.71 -51.43 -0.50 -17.63 16 14 C 0.45 18.47 5.67 71.24 0.40 18.88 16 15 O -0.54 -25.95 12.51 21.96 0.27 -25.68 16 16 C 0.01 0.17 3.19 -12.28 -0.04 0.13 16 17 H 0.13 3.03 8.11 -2.39 -0.02 3.01 16 18 C -0.13 -3.09 9.02 71.98 0.65 -2.44 16 19 C -0.24 -6.85 4.37 -20.14 -0.09 -6.93 16 20 C 0.07 2.08 10.77 85.23 0.92 3.00 16 21 N -0.34 -10.56 12.58 -57.02 -0.72 -11.28 16 22 N -0.38 -8.91 4.01 -369.55 -1.48 -10.39 16 23 C 0.09 1.17 11.47 127.77 1.47 2.64 16 24 C 0.08 1.66 11.38 83.54 0.95 2.61 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.04 1.86 6.06 -2.39 -0.01 1.85 16 27 H 0.03 1.49 7.80 -2.39 -0.02 1.47 16 28 H 0.06 3.43 6.80 -2.39 -0.02 3.41 16 29 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 31 H 0.05 1.27 8.03 -2.39 -0.02 1.25 16 32 H 0.07 1.70 8.11 -2.39 -0.02 1.68 16 33 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.17 5.39 8.06 -2.91 -0.02 5.37 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -75.14 321.02 6.67 -68.47 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.04 Total: 15.46 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 5.77 Total: -10.35 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -1.94 Total: -75.43 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.22 Total: -43.30 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.14 6.67 -68.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077287.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.376 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds