Wall clock time and date at job start Mon Mar 30 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 O 1.45194 * 109.46709 * 294.99556 * 3 2 1 14 14 C 1.34234 * 117.00022 * 90.00375 * 13 3 2 15 15 O 1.20830 * 119.99698 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00215 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.46885 * 299.99584 * 16 14 13 18 18 C 1.52999 * 109.46965 * 60.00012 * 16 14 13 19 19 C 1.50700 * 109.46835 * 179.97438 * 16 14 13 20 20 C 1.39874 * 126.04165 * 299.68975 * 19 16 14 21 21 N 1.30832 * 108.20074 * 179.82155 * 20 19 16 22 22 N 1.40090 * 108.20990 * 0.43888 * 21 20 19 23 23 C 1.46496 * 126.03956 * 179.74314 * 22 21 20 24 24 C 1.34948 * 107.92010 * 359.71795 * 22 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47342 * 59.99615 * 18 16 14 32 32 H 1.09003 * 109.47107 * 180.02562 * 18 16 14 33 33 H 1.09000 * 109.47003 * 299.99528 * 18 16 14 34 34 H 1.07997 * 125.89768 * 0.02562 * 20 19 16 35 35 H 1.09007 * 109.46753 * 269.97376 * 23 22 21 36 36 H 1.08991 * 109.47348 * 29.97323 * 23 22 21 37 37 H 1.08997 * 109.47030 * 149.97626 * 23 22 21 38 38 H 1.08006 * 126.12645 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2192 2.7370 -0.2656 16 6 0.0075 3.4225 -2.5086 17 1 0.7245 4.1968 -2.7811 18 6 -0.1029 2.4061 -3.6468 19 6 -1.3407 4.0495 -2.2632 20 6 -2.5096 3.3722 -1.9004 21 7 -3.4696 4.2522 -1.7749 22 7 -2.9436 5.5180 -2.0640 23 6 -3.6826 6.7828 -2.0470 24 6 -1.6359 5.3665 -2.3605 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 -0.8199 1.6317 -3.3742 32 1 -0.4390 2.9103 -4.5529 33 1 0.8721 1.9522 -3.8245 34 1 -2.6027 2.3072 -1.7470 35 1 -4.1053 6.9699 -3.0342 36 1 -4.4861 6.7243 -1.3128 37 1 -3.0062 7.5952 -1.7814 38 1 -0.9480 6.1551 -2.6280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787077288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:29 Heat of formation + Delta-G solvation = -19.304640 kcal Electronic energy + Delta-G solvation = -20593.585037 eV Core-core repulsion = 17437.929813 eV Total energy + Delta-G solvation = -3155.655224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20317 -39.42614 -35.85173 -34.23078 -33.41787 -32.49120 -31.26132 -29.40179 -27.22880 -26.47987 -24.41266 -23.08966 -21.34931 -21.00403 -19.88935 -19.04252 -17.03836 -16.59164 -16.39434 -15.46776 -15.35086 -14.96077 -14.50469 -14.17050 -14.04467 -13.01821 -12.98771 -12.83848 -12.81133 -12.60865 -12.42357 -11.75324 -11.52751 -11.46670 -11.33311 -11.15799 -11.06886 -10.90145 -10.60024 -10.37954 -10.23820 -9.71925 -9.43903 -9.30607 -9.20819 -8.72993 -8.40742 -8.30435 -6.14419 -4.21194 1.94784 2.56546 2.88461 3.18086 3.26486 3.32203 3.36224 3.91883 4.37634 4.51018 4.84239 4.98855 5.05283 5.16750 5.20496 5.24268 5.37894 5.48421 5.76748 5.81559 6.00137 6.07364 6.24119 6.29804 6.36214 6.41327 6.53335 6.75675 6.94222 7.02914 7.05929 7.24009 7.36198 7.67103 7.78929 7.80729 8.04226 8.22913 8.74016 8.99841 9.44159 10.92264 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032035 B = 0.004523 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.838783 B = 6189.737158 C = 6342.112209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.045 0.955 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.509 6.509 16 C -0.007 4.007 17 H 0.104 0.896 18 C -0.136 4.136 19 C -0.214 4.214 20 C 0.084 3.916 21 N -0.304 5.304 22 N -0.383 5.383 23 C 0.106 3.894 24 C 0.059 3.941 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.179 0.821 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 9.119 -10.780 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.063 0.937 5 C -0.558 4.558 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.736 3.264 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.296 3.704 15 O -0.398 6.398 16 C -0.027 4.027 17 H 0.122 0.878 18 C -0.193 4.193 19 C -0.226 4.226 20 C -0.103 4.103 21 N -0.125 5.125 22 N -0.165 5.165 23 C -0.036 4.036 24 C -0.087 4.087 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.196 0.804 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.879 9.334 -9.991 17.472 hybrid contribution 1.768 -0.113 0.211 1.784 sum -9.110 9.222 -9.779 16.238 Atomic orbital electron populations 1.21856 0.98388 0.98868 1.00812 1.21999 0.92636 0.99429 1.03219 1.20617 0.94819 0.88751 0.78914 0.93696 1.21063 0.89852 1.38764 1.06137 0.91394 1.24884 0.99108 0.94840 0.95139 1.69895 1.35308 1.37936 1.09456 0.86312 0.84094 0.77639 0.78315 1.20484 1.20998 1.19597 1.86459 1.34415 1.62561 1.43830 1.23213 0.80751 0.77065 0.89417 1.90607 1.55450 1.58025 1.35746 1.19146 0.93084 0.97908 0.92612 0.87783 1.21710 1.03216 0.98080 0.96327 1.19535 0.95846 0.92568 1.14651 1.23632 0.90079 0.99579 0.96964 1.77338 1.23068 0.87968 1.24108 1.48351 1.07384 1.06818 1.53938 1.21777 0.97450 0.81076 1.03308 1.22214 0.86659 0.97901 1.01892 0.94960 0.94786 0.92903 0.87518 0.94039 0.92467 0.92292 0.91822 0.90827 0.80422 0.91063 0.89485 0.89697 0.80994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.57 37.16 0.32 -2.81 16 2 C -0.13 -3.36 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.89 2.25 -27.88 -0.06 5.83 16 4 H 0.05 1.34 7.16 -51.93 -0.37 0.97 16 5 C -0.52 -14.56 8.90 -34.44 -0.31 -14.87 16 6 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.23 11.29 55.43 0.63 -24.61 16 9 Si 0.91 21.06 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 O -0.36 -8.33 9.71 -39.27 -0.38 -8.72 16 14 C 0.45 9.31 5.67 36.01 0.20 9.51 16 15 O -0.51 -11.81 12.53 -18.75 -0.23 -12.05 16 16 C -0.01 -0.10 3.19 -92.92 -0.30 -0.40 16 17 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 18 C -0.14 -1.75 9.01 37.16 0.33 -1.41 16 19 C -0.21 -3.18 4.36 -105.05 -0.46 -3.64 16 20 C 0.08 1.33 10.78 -17.37 -0.19 1.14 16 21 N -0.30 -4.80 12.58 30.62 0.39 -4.42 16 22 N -0.38 -4.89 4.01 -68.16 -0.27 -5.17 16 23 C 0.11 0.81 11.47 59.84 0.69 1.50 16 24 C 0.06 0.74 11.38 -17.22 -0.20 0.54 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 27 H 0.05 1.23 7.80 -51.93 -0.40 0.83 16 28 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.06 0.77 8.02 -51.93 -0.42 0.35 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.18 2.71 8.06 -52.49 -0.42 2.28 16 35 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -33.08 319.61 -5.87 -38.95 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.59 Total: 1.64 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.20 Total: -6.49 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.74 Total: -34.19 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.62 Total: -20.76 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.08 -5.87 -38.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.649 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds