Wall clock time and date at job start Mon Mar 30 2020 05:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 O 1.45194 * 109.46709 * 294.99556 * 3 2 1 14 14 C 1.34234 * 117.00022 * 90.00375 * 13 3 2 15 15 O 1.20830 * 119.99698 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00215 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.46885 * 299.99584 * 16 14 13 18 18 C 1.52999 * 109.46965 * 60.00012 * 16 14 13 19 19 C 1.50700 * 109.46835 * 179.97438 * 16 14 13 20 20 C 1.39874 * 126.04165 * 299.68975 * 19 16 14 21 21 N 1.30832 * 108.20074 * 179.82155 * 20 19 16 22 22 N 1.40090 * 108.20990 * 0.43888 * 21 20 19 23 23 C 1.46496 * 126.03956 * 179.74314 * 22 21 20 24 24 C 1.34948 * 107.92010 * 359.71795 * 22 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47342 * 59.99615 * 18 16 14 32 32 H 1.09003 * 109.47107 * 180.02562 * 18 16 14 33 33 H 1.09000 * 109.47003 * 299.99528 * 18 16 14 34 34 H 1.07997 * 125.89768 * 0.02562 * 20 19 16 35 35 H 1.09007 * 109.46753 * 269.97376 * 23 22 21 36 36 H 1.08991 * 109.47348 * 29.97323 * 23 22 21 37 37 H 1.08997 * 109.47030 * 149.97626 * 23 22 21 38 38 H 1.08006 * 126.12645 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2192 2.7370 -0.2656 16 6 0.0075 3.4225 -2.5086 17 1 0.7245 4.1968 -2.7811 18 6 -0.1029 2.4061 -3.6468 19 6 -1.3407 4.0495 -2.2632 20 6 -2.5096 3.3722 -1.9004 21 7 -3.4696 4.2522 -1.7749 22 7 -2.9436 5.5180 -2.0640 23 6 -3.6826 6.7828 -2.0470 24 6 -1.6359 5.3665 -2.3605 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 -0.8199 1.6317 -3.3742 32 1 -0.4390 2.9103 -4.5529 33 1 0.8721 1.9522 -3.8245 34 1 -2.6027 2.3072 -1.7470 35 1 -4.1053 6.9699 -3.0342 36 1 -4.4861 6.7243 -1.3128 37 1 -3.0062 7.5952 -1.7814 38 1 -0.9480 6.1551 -2.6280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787077288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:28 Heat of formation + Delta-G solvation = -39.439463 kcal Electronic energy + Delta-G solvation = -20594.458148 eV Core-core repulsion = 17437.929813 eV Total energy + Delta-G solvation = -3156.528336 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.28981 -41.10155 -37.63035 -35.56944 -35.26431 -33.56633 -33.19472 -30.42587 -29.23575 -27.33727 -25.85904 -24.92455 -22.84547 -22.03636 -21.54608 -20.52572 -18.78281 -18.31520 -17.71756 -17.02970 -16.88292 -16.35066 -16.04067 -15.31728 -15.19904 -14.71982 -14.67425 -14.22736 -13.78115 -13.58488 -13.37446 -13.36694 -13.30275 -13.06991 -12.96399 -12.75212 -12.56261 -12.50983 -12.41804 -12.10473 -11.70554 -11.47788 -11.35447 -10.97952 -10.75013 -10.48120 -10.31932 -9.35278 -8.23978 -6.40658 0.95015 1.43117 1.45021 1.55102 1.57224 1.65979 1.74837 2.28741 2.55639 3.05585 3.59075 3.89408 4.02632 4.24200 4.29771 4.38084 4.40942 4.43525 4.46196 4.48215 4.64637 4.71500 4.84269 4.86662 4.89039 5.05179 5.12907 5.17632 5.26883 5.36879 5.45292 5.55731 5.65036 5.72794 6.05089 6.17218 6.24860 6.66226 6.72589 7.15032 7.33934 8.82622 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.032035 B = 0.004523 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.838783 B = 6189.737158 C = 6342.112209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.226 3.774 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.980 3.020 10 H -0.273 1.273 11 H -0.277 1.277 12 H -0.261 1.261 13 O -0.362 6.362 14 C 0.447 3.553 15 O -0.541 6.541 16 C 0.006 3.994 17 H 0.132 0.868 18 C -0.131 4.131 19 C -0.242 4.242 20 C 0.065 3.935 21 N -0.337 5.337 22 N -0.380 5.380 23 C 0.094 3.906 24 C 0.076 3.924 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.030 0.970 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.269 0.731 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.169 0.831 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 10.687 -12.477 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.803 3.197 10 H -0.199 1.199 11 H -0.202 1.202 12 H -0.185 1.185 13 O -0.279 6.279 14 C 0.291 3.709 15 O -0.431 6.431 16 C -0.014 4.014 17 H 0.150 0.850 18 C -0.188 4.188 19 C -0.254 4.254 20 C -0.121 4.121 21 N -0.160 5.160 22 N -0.162 5.162 23 C -0.046 4.046 24 C -0.072 4.072 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.186 0.814 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.294 10.915 -11.704 19.028 hybrid contribution 1.461 -0.487 0.747 1.712 sum -8.832 10.428 -10.957 17.516 Atomic orbital electron populations 1.21698 0.96365 1.00366 1.00107 1.21842 0.94376 0.98267 1.02167 1.20272 0.94333 0.89185 0.78931 0.98088 1.21370 0.90691 1.39672 1.06792 0.91471 1.25812 1.04165 0.93955 0.94436 1.70030 1.37408 1.38134 1.09877 0.85228 0.77842 0.77889 0.78730 1.19871 1.20237 1.18529 1.86455 1.36272 1.63149 1.42003 1.24470 0.79243 0.76154 0.91053 1.90594 1.55899 1.59031 1.37557 1.19235 0.93795 0.98443 0.89927 0.85015 1.21712 1.02826 0.97631 0.96637 1.19605 0.95182 0.93707 1.16908 1.23643 0.91024 0.99576 0.97811 1.77258 1.23868 0.89460 1.25377 1.48785 1.07950 1.07122 1.52348 1.22206 0.97997 0.79637 1.04715 1.22845 0.86932 0.97961 0.99429 0.92248 0.93998 0.95048 0.89925 0.93484 0.92192 0.93156 0.88687 0.91299 0.81425 0.88897 0.89673 0.86688 0.76694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.57 71.98 0.62 -5.14 16 2 C -0.13 -6.58 5.49 30.60 0.17 -6.41 16 3 C 0.23 12.44 2.25 29.85 0.07 12.51 16 4 H 0.00 0.08 7.16 -2.39 -0.02 0.07 16 5 C -0.55 -31.23 8.90 25.60 0.23 -31.00 16 6 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 7 C 0.02 0.88 5.29 84.66 0.45 1.32 16 8 N -0.92 -53.20 11.29 21.45 0.24 -52.96 16 9 Si 0.98 43.05 29.54 68.60 2.03 45.08 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 O -0.36 -17.22 9.71 -51.45 -0.50 -17.72 16 14 C 0.45 18.49 5.67 71.24 0.40 18.90 16 15 O -0.54 -25.89 12.53 21.95 0.28 -25.62 16 16 C 0.01 0.18 3.19 -12.29 -0.04 0.14 16 17 H 0.13 3.03 8.11 -2.39 -0.02 3.01 16 18 C -0.13 -3.14 9.01 71.98 0.65 -2.49 16 19 C -0.24 -6.83 4.36 -20.14 -0.09 -6.92 16 20 C 0.06 2.07 10.78 85.24 0.92 2.99 16 21 N -0.34 -10.54 12.58 -57.03 -0.72 -11.26 16 22 N -0.38 -8.87 4.01 -369.57 -1.48 -10.35 16 23 C 0.09 1.16 11.47 127.77 1.47 2.62 16 24 C 0.08 1.66 11.38 83.54 0.95 2.61 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.04 1.78 6.06 -2.39 -0.01 1.76 16 27 H 0.03 1.51 7.80 -2.38 -0.02 1.49 16 28 H 0.08 4.64 5.95 -2.39 -0.01 4.63 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.05 1.28 8.02 -2.39 -0.02 1.26 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.72 8.11 -2.39 -0.02 1.70 16 34 H 0.17 5.39 8.06 -2.91 -0.02 5.37 16 35 H 0.09 0.78 8.14 -2.38 -0.02 0.77 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.22 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -74.44 319.61 6.67 -67.76 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.04 Total: 15.93 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 5.79 Total: -10.87 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.96 Total: -74.57 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -0.22 Total: -43.34 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -74.44 6.67 -67.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787077288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.324 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds