Wall clock time and date at job start Mon Mar 30 2020 05:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31509 * 120.00318 * 195.78335 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.46877 * 299.99743 * 9 7 5 12 12 H 1.48497 * 109.47480 * 59.99908 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47003 * 179.97438 * 16 14 13 18 18 C 1.39866 * 126.03699 * 269.69497 * 17 16 14 19 19 N 1.30842 * 108.19872 * 179.81976 * 18 17 16 20 20 N 1.40082 * 108.20694 * 0.43231 * 19 18 17 21 21 C 1.46495 * 126.03880 * 179.69845 * 20 19 18 22 22 C 1.52998 * 109.47405 * 305.02501 * 21 20 19 23 23 C 1.34952 * 107.92411 * 359.72575 * 20 19 18 24 24 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 26 26 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 27 27 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 28 28 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 29 29 H 0.97001 * 120.00286 * 354.88832 * 8 7 5 30 30 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 31 31 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 32 32 H 1.07997 * 125.90250 * 359.97438 * 18 17 16 33 33 H 1.09000 * 109.46947 * 65.03234 * 21 20 19 34 34 H 1.09006 * 109.46920 * 185.02488 * 21 20 19 35 35 H 1.08991 * 109.47389 * 300.00288 * 22 21 20 36 36 H 1.09006 * 109.46652 * 60.00396 * 22 21 20 37 37 H 1.08998 * 109.47143 * 179.97438 * 22 21 20 38 38 H 1.07995 * 126.12765 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6879 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2018 -2.5813 12 1 2.5741 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 6 -1.3585 4.0563 2.2283 18 6 -1.5844 5.3522 1.7533 19 7 -2.8767 5.5318 1.6544 20 7 -3.5151 4.3574 2.0734 21 6 -4.9620 4.1347 2.1263 22 6 -5.6164 5.2316 2.9686 23 6 -2.5616 3.4675 2.4204 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.9665 0.8676 -0.4659 30 1 -0.0984 2.7064 3.2986 31 1 0.7019 4.2037 2.7637 32 1 -0.8236 6.0784 1.5079 33 1 -5.3706 4.1598 1.1161 34 1 -5.1638 3.1623 2.5758 35 1 -5.2078 5.2064 3.9788 36 1 -5.4146 6.2039 2.5191 37 1 -6.6931 5.0661 3.0076 38 1 -2.7289 2.4650 2.7855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:44 Heat of formation + Delta-G solvation = -21.134831 kcal Electronic energy + Delta-G solvation = -20245.754724 eV Core-core repulsion = 17090.020137 eV Total energy + Delta-G solvation = -3155.734587 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.25754 -39.56681 -35.99068 -34.69613 -33.50767 -32.07971 -31.68885 -30.25268 -27.78544 -26.79517 -23.94739 -22.53364 -21.60504 -20.76586 -20.07788 -19.35080 -17.75712 -17.01768 -16.83604 -15.71946 -15.58384 -15.17632 -14.44918 -14.19079 -14.00501 -13.37254 -13.30162 -13.00184 -12.76651 -12.49949 -12.42606 -12.39594 -12.29251 -11.78255 -11.62027 -11.42554 -11.24998 -10.88379 -10.54502 -10.48619 -9.96431 -9.77766 -9.59816 -9.42500 -9.39461 -8.80562 -8.39523 -8.33942 -6.60979 -4.21743 1.89009 2.44409 2.75131 3.00610 3.33397 3.41563 3.55600 3.88342 4.29068 4.38588 4.66295 4.75932 4.89623 4.96418 5.13110 5.15415 5.24890 5.42256 5.43340 5.67128 5.73912 5.79498 5.87082 5.92681 5.99993 6.11913 6.13816 6.50639 6.64225 6.66057 6.82561 6.88389 6.99042 7.23189 7.48805 7.70300 7.89393 8.28056 8.61200 8.90291 9.46349 10.81815 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.035904 B = 0.004275 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.675765 B = 6548.067377 C = 6698.197261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.201 3.799 4 H 0.037 0.963 5 C -0.605 4.605 6 H 0.068 0.932 7 C 0.039 3.961 8 N -0.896 5.896 9 Si 1.037 2.963 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.279 1.279 13 O -0.348 6.348 14 C 0.447 3.553 15 O -0.513 6.513 16 C -0.036 4.036 17 C -0.220 4.220 18 C 0.065 3.935 19 N -0.298 5.298 20 N -0.374 5.374 21 C 0.131 3.869 22 C -0.164 4.164 23 C 0.069 3.931 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.271 0.729 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.182 0.818 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.884 4.943 9.307 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.147 3.853 4 H 0.055 0.945 5 C -0.643 4.643 6 H 0.086 0.914 7 C -0.167 4.167 8 N -0.530 5.530 9 Si 0.864 3.136 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.205 1.205 13 O -0.263 6.263 14 C 0.290 3.710 15 O -0.402 6.402 16 C -0.075 4.075 17 C -0.232 4.232 18 C -0.121 4.121 19 N -0.119 5.119 20 N -0.157 5.157 21 C 0.010 3.990 22 C -0.222 4.222 23 C -0.077 4.077 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.198 0.802 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.050 5.164 7.098 21.888 hybrid contribution 0.580 -0.142 1.698 1.800 sum -19.471 5.021 8.796 21.948 Atomic orbital electron populations 1.21889 0.97508 0.99589 1.01439 1.22434 0.93732 0.99561 1.02878 1.20854 0.96039 0.87962 0.80416 0.94522 1.21964 0.88826 1.48917 1.04544 0.91382 1.25651 0.97382 0.92687 1.01027 1.70861 1.07221 1.40984 1.33906 0.84177 0.75556 0.77795 0.76061 1.20522 1.19549 1.20456 1.86530 1.34578 1.62474 1.42766 1.23510 0.80483 0.77031 0.90009 1.90595 1.55969 1.58276 1.35377 1.19513 0.93350 1.00010 0.94637 1.19469 0.93798 0.95889 1.14015 1.23744 0.93532 0.96669 0.98194 1.77268 1.07246 1.05218 1.22162 1.48554 1.06083 1.10434 1.50621 1.21644 0.75216 1.00088 1.02030 1.22049 1.00457 0.99515 1.00170 1.22240 0.88480 0.96078 1.00907 0.94249 0.93973 0.92774 0.90412 0.92059 0.91870 0.87931 0.87458 0.80155 0.89883 0.88782 0.92128 0.91094 0.90861 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.56 37.16 0.32 -2.59 16 2 C -0.15 -3.39 5.32 -26.74 -0.14 -3.53 16 3 C 0.20 5.10 1.84 -27.89 -0.05 5.05 16 4 H 0.04 0.98 5.84 -51.93 -0.30 0.68 16 5 C -0.60 -17.40 9.17 -34.44 -0.32 -17.72 16 6 H 0.07 2.10 8.06 -52.48 -0.42 1.67 16 7 C 0.04 1.11 5.33 -17.82 -0.10 1.02 16 8 N -0.90 -27.22 13.69 55.43 0.76 -26.46 16 9 Si 1.04 25.33 26.27 -169.99 -4.47 20.86 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.07 5.61 56.52 0.32 -5.75 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 O -0.35 -7.96 9.80 -39.26 -0.38 -8.35 16 14 C 0.45 8.73 6.39 36.00 0.23 8.96 16 15 O -0.51 -11.25 13.18 -18.75 -0.25 -11.49 16 16 C -0.04 -0.50 6.30 -29.03 -0.18 -0.68 16 17 C -0.22 -3.05 4.59 -105.05 -0.48 -3.53 16 18 C 0.06 0.92 11.96 -17.36 -0.21 0.71 16 19 N -0.30 -4.33 12.42 30.62 0.38 -3.95 16 20 N -0.37 -4.60 3.68 -61.37 -0.23 -4.82 16 21 C 0.13 1.07 7.23 -4.05 -0.03 1.04 16 22 C -0.16 -1.15 10.10 37.16 0.38 -0.78 16 23 C 0.07 0.85 11.36 -17.22 -0.20 0.66 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.80 6.07 -51.93 -0.32 0.48 16 26 H 0.05 1.11 7.77 -51.93 -0.40 0.71 16 27 H 0.08 1.83 4.67 -51.93 -0.24 1.58 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.11 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -34.34 317.47 -5.75 -40.09 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.57 Total: 0.75 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.78 Total: -11.40 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.91 Total: -35.23 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.63 Total: -19.84 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.47 Total: 20.86 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.34 -5.75 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.953 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds