Wall clock time and date at job start Mon Mar 30 2020 05:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31509 * 120.00318 * 195.78335 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.46877 * 299.99743 * 9 7 5 12 12 H 1.48497 * 109.47480 * 59.99908 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47003 * 179.97438 * 16 14 13 18 18 C 1.39866 * 126.03699 * 269.69497 * 17 16 14 19 19 N 1.30842 * 108.19872 * 179.81976 * 18 17 16 20 20 N 1.40082 * 108.20694 * 0.43231 * 19 18 17 21 21 C 1.46495 * 126.03880 * 179.69845 * 20 19 18 22 22 C 1.52998 * 109.47405 * 305.02501 * 21 20 19 23 23 C 1.34952 * 107.92411 * 359.72575 * 20 19 18 24 24 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 26 26 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 27 27 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 28 28 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 29 29 H 0.97001 * 120.00286 * 354.88832 * 8 7 5 30 30 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 31 31 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 32 32 H 1.07997 * 125.90250 * 359.97438 * 18 17 16 33 33 H 1.09000 * 109.46947 * 65.03234 * 21 20 19 34 34 H 1.09006 * 109.46920 * 185.02488 * 21 20 19 35 35 H 1.08991 * 109.47389 * 300.00288 * 22 21 20 36 36 H 1.09006 * 109.46652 * 60.00396 * 22 21 20 37 37 H 1.08998 * 109.47143 * 179.97438 * 22 21 20 38 38 H 1.07995 * 126.12765 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6879 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2018 -2.5813 12 1 2.5741 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 6 -1.3585 4.0563 2.2283 18 6 -1.5844 5.3522 1.7533 19 7 -2.8767 5.5318 1.6544 20 7 -3.5151 4.3574 2.0734 21 6 -4.9620 4.1347 2.1263 22 6 -5.6164 5.2316 2.9686 23 6 -2.5616 3.4675 2.4204 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 5.9665 0.8676 -0.4659 30 1 -0.0984 2.7064 3.2986 31 1 0.7019 4.2037 2.7637 32 1 -0.8236 6.0784 1.5079 33 1 -5.3706 4.1598 1.1161 34 1 -5.1638 3.1623 2.5758 35 1 -5.2078 5.2064 3.9788 36 1 -5.4146 6.2039 2.5191 37 1 -6.6931 5.0661 3.0076 38 1 -2.7289 2.4650 2.7855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:44 Heat of formation + Delta-G solvation = -42.978575 kcal Electronic energy + Delta-G solvation = -20246.701940 eV Core-core repulsion = 17090.020137 eV Total energy + Delta-G solvation = -3156.681803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.24652 -41.18239 -37.69567 -35.51357 -35.47464 -33.89331 -32.93302 -31.09008 -29.56715 -28.01389 -24.76482 -24.43227 -23.11103 -21.69468 -21.51337 -20.75810 -19.85418 -18.53547 -17.92042 -17.29773 -16.90896 -16.26052 -15.75692 -15.36696 -15.16438 -14.94089 -14.69655 -14.51377 -14.37876 -13.98404 -13.75442 -13.39282 -13.22376 -13.00257 -12.94126 -12.69215 -12.68306 -12.39774 -12.24947 -11.88923 -11.53828 -11.49250 -11.46737 -11.13227 -10.81336 -10.56496 -10.35034 -9.37580 -8.91386 -6.53881 0.94793 1.38355 1.45767 1.48433 1.57982 1.65463 1.70037 2.34964 2.42907 2.92108 3.55137 3.95625 3.98609 4.08944 4.16450 4.21439 4.22189 4.28567 4.35414 4.43650 4.50065 4.64710 4.72468 4.73815 4.83525 4.97297 5.02479 5.10702 5.14581 5.15715 5.23388 5.43675 5.54985 5.67679 5.88934 6.05823 6.16466 6.43487 6.73035 7.07184 7.25900 8.50288 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.035904 B = 0.004275 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.675765 B = 6548.067377 C = 6698.197261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.145 4.145 3 C 0.203 3.797 4 H 0.024 0.976 5 C -0.615 4.615 6 H 0.031 0.969 7 C -0.004 4.004 8 N -0.922 5.922 9 Si 1.070 2.930 10 H -0.274 1.274 11 H -0.237 1.237 12 H -0.273 1.273 13 O -0.363 6.363 14 C 0.444 3.556 15 O -0.537 6.537 16 C -0.022 4.022 17 C -0.245 4.245 18 C 0.049 3.951 19 N -0.329 5.329 20 N -0.374 5.374 21 C 0.120 3.880 22 C -0.157 4.157 23 C 0.076 3.924 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.258 0.742 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.189 0.811 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.099 0.901 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.717 3.969 9.851 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.148 3.852 4 H 0.042 0.958 5 C -0.653 4.653 6 H 0.049 0.951 7 C -0.204 4.204 8 N -0.556 5.556 9 Si 0.891 3.109 10 H -0.199 1.199 11 H -0.161 1.161 12 H -0.198 1.198 13 O -0.280 6.280 14 C 0.288 3.712 15 O -0.427 6.427 16 C -0.061 4.061 17 C -0.256 4.256 18 C -0.137 4.137 19 N -0.150 5.150 20 N -0.156 5.156 21 C 0.000 4.000 22 C -0.215 4.215 23 C -0.071 4.071 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.206 0.794 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -22.912 4.207 7.674 24.526 hybrid contribution 1.412 0.239 1.630 2.170 sum -21.500 4.446 9.304 23.845 Atomic orbital electron populations 1.21780 0.94713 1.01620 1.01255 1.22309 0.96155 0.97300 1.02540 1.20562 0.93618 0.89739 0.81241 0.95811 1.22139 0.91078 1.48511 1.03570 0.95051 1.26968 0.97538 0.91919 1.03975 1.70967 1.08215 1.42991 1.33471 0.83772 0.75444 0.78939 0.72744 1.19911 1.16097 1.19849 1.86518 1.36819 1.63244 1.41376 1.24636 0.78883 0.76033 0.91602 1.90578 1.56280 1.59033 1.36832 1.19594 0.93658 1.00527 0.92304 1.19566 0.94282 0.96015 1.15754 1.24029 0.93833 0.97455 0.98361 1.77213 1.07611 1.06917 1.23295 1.48947 1.07549 1.09679 1.49428 1.22063 0.73109 1.02090 1.02731 1.21995 1.02053 0.98032 0.99395 1.22788 0.87973 0.97049 0.99330 0.91056 0.93417 0.93701 0.91068 0.92114 0.93211 0.84786 0.85851 0.79431 0.89752 0.85467 0.92467 0.93295 0.88196 0.77937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.56 71.98 0.62 -4.36 16 2 C -0.15 -6.40 5.32 30.59 0.16 -6.24 16 3 C 0.20 10.23 1.84 29.84 0.05 10.29 16 4 H 0.02 1.27 5.84 -2.39 -0.01 1.26 16 5 C -0.62 -36.25 9.17 25.60 0.23 -36.01 16 6 H 0.03 2.02 8.06 -2.91 -0.02 1.99 16 7 C 0.00 -0.23 5.33 84.66 0.45 0.23 16 8 N -0.92 -57.27 13.69 21.45 0.29 -56.97 16 9 Si 1.07 50.48 26.27 68.60 1.80 52.28 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.24 -9.89 5.61 99.48 0.56 -9.33 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 O -0.36 -16.44 9.80 -51.44 -0.50 -16.95 16 14 C 0.44 16.67 6.39 71.24 0.45 17.13 16 15 O -0.54 -22.82 13.18 21.97 0.29 -22.53 16 16 C -0.02 -0.57 6.30 29.10 0.18 -0.39 16 17 C -0.24 -6.27 4.59 -20.14 -0.09 -6.36 16 18 C 0.05 1.34 11.96 85.23 1.02 2.36 16 19 N -0.33 -9.28 12.42 -57.03 -0.71 -9.98 16 20 N -0.37 -8.35 3.68 -348.07 -1.28 -9.63 16 21 C 0.12 1.61 7.23 86.38 0.62 2.23 16 22 C -0.16 -1.87 10.10 71.98 0.73 -1.14 16 23 C 0.08 1.64 11.36 83.54 0.95 2.59 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.05 1.66 6.07 -2.38 -0.01 1.65 16 26 H 0.04 1.71 7.77 -2.38 -0.02 1.70 16 27 H 0.07 3.20 4.67 -2.39 -0.01 3.19 16 28 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.26 16.20 8.73 -92.71 -0.81 15.39 16 30 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 32 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.13 0.87 8.07 -2.38 -0.02 0.85 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.20 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -76.15 317.47 6.14 -70.02 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.86 Total: 13.45 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 5.39 Total: -19.68 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -1.69 Total: -76.59 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.21 Total: -39.48 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 1.80 Total: 52.28 kcal Total: -76.15 6.14 -70.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.037 kcal (2) G-P(sol) polarization free energy of solvation -76.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds