Wall clock time and date at job start Mon Mar 30 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 O 1.45194 * 109.46709 * 294.99556 * 3 2 1 14 14 C 1.34234 * 117.00022 * 90.00375 * 13 3 2 15 15 O 1.20830 * 119.99698 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00215 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.46835 * 179.97438 * 16 14 13 18 18 C 1.39864 * 126.04011 * 269.68945 * 17 16 14 19 19 N 1.30840 * 108.20219 * 179.82146 * 18 17 16 20 20 N 1.40085 * 108.20720 * 0.43964 * 19 18 17 21 21 C 1.46494 * 126.04158 * 179.69870 * 20 19 18 22 22 C 1.53004 * 109.46852 * 305.02728 * 21 20 19 23 23 C 1.34948 * 107.92017 * 359.71547 * 20 19 18 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46885 * 299.99584 * 16 14 13 31 31 H 1.09004 * 109.46955 * 60.00156 * 16 14 13 32 32 H 1.08005 * 125.90232 * 0.02562 * 18 17 16 33 33 H 1.09000 * 109.47148 * 65.01833 * 21 20 19 34 34 H 1.08992 * 109.47530 * 185.02442 * 21 20 19 35 35 H 1.08992 * 109.47287 * 59.99564 * 22 21 20 36 36 H 1.09005 * 109.46830 * 180.02562 * 22 21 20 37 37 H 1.09006 * 109.46949 * 299.99588 * 22 21 20 38 38 H 1.08003 * 126.12415 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2192 2.7370 -0.2656 16 6 0.0075 3.4225 -2.5086 17 6 -1.3407 4.0495 -2.2632 18 6 -2.5821 3.4417 -2.4772 19 7 -3.5173 4.2953 -2.1474 20 7 -2.8997 5.4785 -1.7219 21 6 -3.5829 6.6930 -1.2700 22 6 -4.5659 7.1560 -2.3472 23 6 -1.5643 5.3019 -1.8023 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 0.7245 4.1968 -2.7811 31 1 -0.0712 2.6983 -3.3195 32 1 -2.7413 2.4397 -2.8473 33 1 -4.1261 6.4829 -0.3487 34 1 -2.8479 7.4769 -1.0878 35 1 -5.3009 6.3721 -2.5295 36 1 -5.0739 8.0600 -2.0111 37 1 -4.0227 7.3662 -3.2686 38 1 -0.8091 6.0298 -1.5446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:47 Heat of formation + Delta-G solvation = -13.083498 kcal Electronic energy + Delta-G solvation = -20233.293402 eV Core-core repulsion = 17077.907947 eV Total energy + Delta-G solvation = -3155.385455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25122 -39.59019 -36.03267 -34.68802 -33.54249 -32.06895 -31.70888 -30.24715 -27.95876 -26.89529 -23.94997 -22.86269 -21.68521 -20.75658 -20.18566 -19.41021 -17.32600 -17.00195 -16.49051 -15.82986 -15.58574 -15.24676 -14.51589 -14.36128 -14.14582 -13.56524 -13.25867 -13.07470 -12.70466 -12.62376 -12.38145 -12.34969 -11.94208 -11.74364 -11.60705 -11.54529 -11.37483 -11.14794 -10.72090 -10.52803 -10.00716 -9.80616 -9.56073 -9.43223 -9.39403 -9.03132 -8.62750 -8.36964 -6.21245 -4.22951 1.90188 2.45289 2.74974 2.99881 3.20027 3.32082 3.35648 3.84866 4.28254 4.30576 4.67844 4.78479 4.91219 4.97351 5.08660 5.15602 5.26092 5.44129 5.44273 5.65408 5.74686 5.75355 5.87394 5.88265 5.97118 6.07088 6.14119 6.50311 6.60787 6.65214 6.74102 6.79305 6.99739 7.13251 7.43653 7.61428 7.70679 8.30109 8.71331 8.87962 9.36663 10.90873 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034912 B = 0.004217 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.828116 B = 6637.797225 C = 6712.398733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.197 3.803 4 H 0.045 0.955 5 C -0.524 4.524 6 H 0.087 0.913 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.877 3.123 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.261 1.261 13 O -0.344 6.344 14 C 0.448 3.552 15 O -0.512 6.512 16 C -0.035 4.035 17 C -0.221 4.221 18 C 0.064 3.936 19 N -0.299 5.299 20 N -0.374 5.374 21 C 0.131 3.869 22 C -0.164 4.164 23 C 0.071 3.929 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.269 0.731 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.180 0.820 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.979 9.623 -7.713 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.143 3.857 4 H 0.062 0.938 5 C -0.562 4.562 6 H 0.105 0.895 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.706 3.294 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.186 1.186 13 O -0.260 6.260 14 C 0.291 3.709 15 O -0.401 6.401 16 C -0.074 4.074 17 C -0.233 4.233 18 C -0.122 4.122 19 N -0.120 5.120 20 N -0.157 5.157 21 C 0.010 3.990 22 C -0.222 4.222 23 C -0.076 4.076 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.197 0.803 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -17.327 9.907 -7.123 21.193 hybrid contribution 0.511 -0.714 0.946 1.290 sum -16.816 9.194 -6.178 20.136 Atomic orbital electron populations 1.21880 0.96931 0.99845 1.01844 1.22349 0.94376 0.99698 1.02073 1.20909 0.96117 0.88052 0.80583 0.93761 1.20828 0.87896 1.39687 1.07742 0.89524 1.24739 0.94927 0.95319 0.97399 1.69838 1.08492 1.44512 1.29811 0.86995 0.81005 0.80157 0.81240 1.19949 1.21773 1.18555 1.86497 1.34734 1.62592 1.42193 1.23520 0.80353 0.77012 0.90048 1.90606 1.55393 1.58191 1.35935 1.19509 0.93145 1.00121 0.94669 1.19465 0.94786 0.95000 1.14026 1.23712 0.90128 0.99238 0.99142 1.77257 1.21949 0.92351 1.20423 1.48553 1.04169 1.11795 1.51151 1.21649 0.96497 0.82699 0.98162 1.22050 0.99551 1.01965 0.98609 1.22288 0.86248 0.98723 1.00294 0.94099 0.93412 0.92707 0.91994 0.91268 0.92118 0.87658 0.87509 0.80261 0.89895 0.88707 0.91126 0.90861 0.92116 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.57 37.16 0.32 -2.64 16 2 C -0.15 -3.37 5.15 -26.73 -0.14 -3.51 16 3 C 0.20 4.95 1.84 -27.88 -0.05 4.90 16 4 H 0.04 1.19 6.22 -51.93 -0.32 0.86 16 5 C -0.52 -15.00 9.48 -34.44 -0.33 -15.33 16 6 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 7 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 8 N -0.89 -26.81 13.96 55.43 0.77 -26.03 16 9 Si 0.88 21.83 24.41 -169.99 -4.15 17.68 16 10 H -0.27 -6.52 6.83 56.52 0.39 -6.14 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 13 O -0.34 -7.70 9.81 -39.27 -0.39 -8.08 16 14 C 0.45 8.57 6.41 36.01 0.23 8.80 16 15 O -0.51 -11.10 13.18 -18.75 -0.25 -11.35 16 16 C -0.04 -0.48 6.30 -29.03 -0.18 -0.66 16 17 C -0.22 -3.01 4.59 -105.05 -0.48 -3.50 16 18 C 0.06 0.88 11.96 -17.37 -0.21 0.67 16 19 N -0.30 -4.27 12.42 30.62 0.38 -3.89 16 20 N -0.37 -4.59 3.68 -61.37 -0.23 -4.82 16 21 C 0.13 1.08 7.23 -4.04 -0.03 1.05 16 22 C -0.16 -1.16 10.10 37.16 0.38 -0.78 16 23 C 0.07 0.88 11.36 -17.22 -0.20 0.68 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.92 6.06 -51.93 -0.31 0.60 16 26 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 27 H 0.06 1.47 3.21 -51.93 -0.17 1.30 16 28 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.18 2.02 8.06 -52.48 -0.42 1.60 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -34.25 315.31 -5.35 -39.60 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.46 Total: 0.28 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -0.79 Total: -8.14 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.93 Total: -34.75 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.63 Total: -19.43 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.15 Total: 17.68 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.25 -5.35 -39.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.517 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds