Wall clock time and date at job start Mon Mar 30 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 O 1.45194 * 109.46709 * 294.99556 * 3 2 1 14 14 C 1.34234 * 117.00022 * 90.00375 * 13 3 2 15 15 O 1.20830 * 119.99698 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00215 * 179.97438 * 14 13 3 17 17 C 1.50700 * 109.46835 * 179.97438 * 16 14 13 18 18 C 1.39864 * 126.04011 * 269.68945 * 17 16 14 19 19 N 1.30840 * 108.20219 * 179.82146 * 18 17 16 20 20 N 1.40085 * 108.20720 * 0.43964 * 19 18 17 21 21 C 1.46494 * 126.04158 * 179.69870 * 20 19 18 22 22 C 1.53004 * 109.46852 * 305.02728 * 21 20 19 23 23 C 1.34948 * 107.92017 * 359.71547 * 20 19 18 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46885 * 299.99584 * 16 14 13 31 31 H 1.09004 * 109.46955 * 60.00156 * 16 14 13 32 32 H 1.08005 * 125.90232 * 0.02562 * 18 17 16 33 33 H 1.09000 * 109.47148 * 65.01833 * 21 20 19 34 34 H 1.08992 * 109.47530 * 185.02442 * 21 20 19 35 35 H 1.08992 * 109.47287 * 59.99564 * 22 21 20 36 36 H 1.09005 * 109.46830 * 180.02562 * 22 21 20 37 37 H 1.09006 * 109.46949 * 299.99588 * 22 21 20 38 38 H 1.08003 * 126.12415 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2192 2.7370 -0.2656 16 6 0.0075 3.4225 -2.5086 17 6 -1.3407 4.0495 -2.2632 18 6 -2.5821 3.4417 -2.4772 19 7 -3.5173 4.2953 -2.1474 20 7 -2.8997 5.4785 -1.7219 21 6 -3.5829 6.6930 -1.2700 22 6 -4.5659 7.1560 -2.3472 23 6 -1.5643 5.3019 -1.8023 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 5.8770 0.4827 2.1133 30 1 0.7245 4.1968 -2.7811 31 1 -0.0712 2.6983 -3.3195 32 1 -2.7413 2.4397 -2.8473 33 1 -4.1261 6.4829 -0.3487 34 1 -2.8479 7.4769 -1.0878 35 1 -5.3009 6.3721 -2.5295 36 1 -5.0739 8.0600 -2.0111 37 1 -4.0227 7.3662 -3.2686 38 1 -0.8091 6.0298 -1.5446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086097.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:46 Heat of formation + Delta-G solvation = -35.128160 kcal Electronic energy + Delta-G solvation = -20234.249331 eV Core-core repulsion = 17077.907947 eV Total energy + Delta-G solvation = -3156.341383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.23158 -41.18470 -37.71877 -35.50481 -35.45424 -33.93800 -32.91857 -31.08412 -29.80575 -28.05419 -24.90590 -24.60992 -23.20836 -21.74313 -21.56171 -20.74218 -19.17540 -18.40041 -17.88964 -17.51812 -16.97628 -16.38351 -16.04913 -15.38099 -15.29850 -14.95243 -14.75813 -14.44454 -14.00919 -13.86882 -13.79327 -13.39562 -13.25370 -13.17211 -13.06023 -12.96671 -12.66705 -12.54894 -12.24890 -11.99888 -11.53785 -11.49706 -11.45095 -11.17077 -11.06474 -10.69890 -10.33850 -9.35443 -8.43463 -6.50822 0.95599 1.22972 1.30512 1.40200 1.50024 1.59803 1.70912 2.20010 2.41306 2.89102 3.56569 3.95637 3.98021 4.08722 4.12367 4.16501 4.21390 4.24521 4.35039 4.41171 4.49336 4.63965 4.73716 4.76474 4.84090 4.95553 4.97818 4.99586 5.07833 5.17085 5.23273 5.36747 5.40828 5.68754 5.81521 6.15709 6.24277 6.53792 6.74872 7.05413 7.18719 8.72505 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.034912 B = 0.004217 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.828116 B = 6637.797225 C = 6712.398733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.146 4.146 3 C 0.202 3.798 4 H 0.026 0.974 5 C -0.537 4.537 6 H 0.048 0.952 7 C 0.031 3.969 8 N -0.931 5.931 9 Si 0.937 3.063 10 H -0.252 1.252 11 H -0.285 1.285 12 H -0.259 1.259 13 O -0.357 6.357 14 C 0.445 3.555 15 O -0.538 6.538 16 C -0.022 4.022 17 C -0.243 4.243 18 C 0.053 3.947 19 N -0.329 5.329 20 N -0.375 5.375 21 C 0.119 3.881 22 C -0.156 4.156 23 C 0.070 3.930 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.274 0.726 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.195 0.805 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.638 9.882 -7.807 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.148 3.852 4 H 0.043 0.957 5 C -0.575 4.575 6 H 0.067 0.933 7 C -0.169 4.169 8 N -0.569 5.569 9 Si 0.762 3.238 10 H -0.177 1.177 11 H -0.211 1.211 12 H -0.183 1.183 13 O -0.273 6.273 14 C 0.290 3.710 15 O -0.429 6.429 16 C -0.060 4.060 17 C -0.255 4.255 18 C -0.132 4.132 19 N -0.150 5.150 20 N -0.157 5.157 21 C 0.000 4.000 22 C -0.214 4.214 23 C -0.077 4.077 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.212 0.788 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -19.015 10.178 -7.239 22.750 hybrid contribution 1.025 -0.650 0.916 1.521 sum -17.990 9.528 -6.323 21.317 Atomic orbital electron populations 1.21780 0.94546 1.01753 1.01417 1.22259 0.96436 0.97674 1.01984 1.20547 0.93667 0.89669 0.81346 0.95651 1.21035 0.89931 1.39485 1.07033 0.93339 1.25529 0.96007 0.95688 0.99643 1.69956 1.10284 1.45704 1.30978 0.86025 0.79209 0.80268 0.78254 1.17725 1.21128 1.18343 1.86496 1.36870 1.63297 1.40648 1.24665 0.78752 0.76010 0.91604 1.90591 1.55734 1.59056 1.37486 1.19606 0.93517 1.00781 0.92121 1.19582 0.94613 0.95723 1.15583 1.24060 0.90218 0.99941 0.99009 1.77204 1.22904 0.93428 1.21467 1.48926 1.04390 1.12138 1.50271 1.22045 0.97513 0.82084 0.98397 1.21990 0.98852 1.02320 0.98213 1.22795 0.86894 0.99018 0.98982 0.90974 0.92927 0.94052 0.92684 0.90714 0.91626 0.85266 0.84928 0.78841 0.89795 0.85783 0.93116 0.88269 0.92472 0.78466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 8.57 71.98 0.62 -4.59 16 2 C -0.15 -6.47 5.15 30.60 0.16 -6.31 16 3 C 0.20 10.16 1.84 29.85 0.05 10.22 16 4 H 0.03 1.38 6.22 -2.39 -0.01 1.36 16 5 C -0.54 -31.50 9.48 25.60 0.24 -31.26 16 6 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 7 C 0.03 1.80 5.45 84.66 0.46 2.26 16 8 N -0.93 -57.11 13.96 21.45 0.30 -56.81 16 9 Si 0.94 44.78 24.41 68.60 1.67 46.46 16 10 H -0.25 -11.16 6.83 99.48 0.68 -10.48 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -12.22 6.53 99.48 0.65 -11.57 16 13 O -0.36 -15.83 9.81 -51.45 -0.50 -16.34 16 14 C 0.45 16.48 6.41 71.24 0.46 16.93 16 15 O -0.54 -22.86 13.18 21.95 0.29 -22.57 16 16 C -0.02 -0.54 6.30 29.10 0.18 -0.36 16 17 C -0.24 -6.16 4.59 -20.14 -0.09 -6.25 16 18 C 0.05 1.39 11.96 85.23 1.02 2.41 16 19 N -0.33 -9.07 12.42 -57.02 -0.71 -9.77 16 20 N -0.38 -8.58 3.68 -348.07 -1.28 -9.86 16 21 C 0.12 1.71 7.23 86.38 0.62 2.33 16 22 C -0.16 -1.92 10.10 71.98 0.73 -1.20 16 23 C 0.07 1.59 11.36 83.54 0.95 2.54 16 24 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.05 1.91 6.06 -2.39 -0.01 1.89 16 26 H 0.04 1.66 7.80 -2.38 -0.02 1.64 16 27 H 0.06 2.50 3.21 -2.39 -0.01 2.49 16 28 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.13 2.60 8.14 -2.38 -0.02 2.59 16 32 H 0.19 4.11 8.06 -2.91 -0.02 4.08 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.12 1.03 8.07 -2.39 -0.02 1.01 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.20 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -75.34 315.31 6.13 -69.21 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.96 Total: 12.96 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 5.40 Total: -13.27 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.69 Total: -76.44 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.22 Total: -38.91 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.67 Total: 46.46 kcal Total: -75.34 6.13 -69.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086097.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.079 kcal (2) G-P(sol) polarization free energy of solvation -75.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds