Wall clock time and date at job start Mon Mar 30 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47086 * 2 1 4 4 C 1.38122 * 126.29676 * 270.00049 * 3 2 1 5 5 C 1.47292 * 126.42555 * 359.97358 * 4 3 2 6 6 O 1.21524 * 119.99719 * 359.97438 * 5 4 3 7 7 O 1.34752 * 119.99747 * 180.02562 * 5 4 3 8 8 C 1.45201 * 116.99598 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47488 * 30.00261 * 8 7 5 10 10 C 1.50703 * 109.46994 * 150.00034 * 8 7 5 11 11 H 1.07998 * 119.99948 * 0.02562 * 10 8 7 12 12 C 1.37883 * 119.99901 * 179.97438 * 10 8 7 13 13 N 1.31514 * 119.99866 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99806 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47316 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47182 * 120.00052 * 14 12 10 17 17 H 1.48492 * 109.47189 * 240.00072 * 14 12 10 18 18 C 1.53006 * 109.47339 * 270.00121 * 8 7 5 19 19 C 1.52997 * 109.47127 * 64.99923 * 18 8 7 20 20 C 1.41334 * 107.14858 * 180.23730 * 4 3 2 21 21 N 1.30434 * 108.01494 * 359.58946 * 20 4 3 22 22 N 1.34226 * 126.29354 * 89.99113 * 3 2 1 23 23 C 1.46494 * 125.74542 * 0.02562 * 22 3 2 24 24 H 1.09005 * 109.46663 * 60.00717 * 1 2 3 25 25 H 1.09005 * 109.46677 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47916 * 300.00110 * 1 2 3 27 27 H 1.08998 * 109.47565 * 239.99550 * 2 1 3 28 28 H 1.08998 * 109.47187 * 119.99653 * 2 1 3 29 29 H 0.97000 * 119.99365 * 179.97438 * 13 12 10 30 30 H 1.08998 * 109.46505 * 304.99794 * 18 8 7 31 31 H 1.08996 * 109.46884 * 185.00675 * 18 8 7 32 32 H 1.09002 * 109.47153 * 180.02562 * 19 18 8 33 33 H 1.09001 * 109.46832 * 60.00321 * 19 18 8 34 34 H 1.09004 * 109.47261 * 300.00303 * 19 18 8 35 35 H 1.08004 * 125.99567 * 179.75602 * 20 4 3 36 36 H 1.09002 * 109.47427 * 89.99571 * 23 22 3 37 37 H 1.09004 * 109.47148 * 209.99618 * 23 22 3 38 38 H 1.08998 * 109.47235 * 329.99522 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3049 2.1917 -1.1132 5 6 2.1595 1.7791 -2.5197 6 8 1.7653 0.6612 -2.7872 7 8 2.4647 2.6409 -3.5096 8 6 2.2980 2.1661 -4.8716 9 1 1.4935 1.4314 -4.9044 10 6 1.9552 3.3267 -5.7698 11 1 1.8714 4.3216 -5.3582 12 6 1.7495 3.1184 -7.1171 13 7 1.8520 1.9068 -7.6184 14 14 1.3239 4.5568 -8.2303 15 1 1.2687 5.8047 -7.4273 16 1 2.3622 4.6920 -9.2834 17 1 0.0031 4.3174 -8.8652 18 6 3.5996 1.5188 -5.3490 19 6 3.8823 0.2672 -4.5158 20 6 2.7552 3.4487 -0.6496 21 7 2.7412 3.4263 0.6545 22 7 2.2970 2.1700 1.0819 23 6 2.1467 1.7440 2.4754 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7069 1.7603 -8.5662 30 1 4.4209 2.2259 -5.2327 31 1 3.5041 1.2425 -6.3990 32 1 4.8098 -0.1937 -4.8556 33 1 3.0609 -0.4399 -4.6321 34 1 3.9778 0.5436 -3.4657 35 1 3.0555 4.2825 -1.2669 36 1 3.0784 1.2960 2.8209 37 1 1.9069 2.6077 3.0956 38 1 1.3430 1.0112 2.5467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:02 Heat of formation + Delta-G solvation = -26.993848 kcal Electronic energy + Delta-G solvation = -20715.547683 eV Core-core repulsion = 17559.559030 eV Total energy + Delta-G solvation = -3155.988653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35552 -39.03675 -35.62909 -34.30180 -33.35212 -32.92285 -31.27421 -29.28660 -27.56230 -26.83768 -24.07188 -23.19630 -22.26415 -20.83105 -19.65120 -19.05151 -17.33771 -16.51630 -16.00806 -15.68549 -15.15285 -14.90346 -14.47084 -14.34736 -14.11275 -13.38278 -12.98714 -12.93322 -12.81237 -12.65831 -12.26245 -11.96301 -11.69429 -11.37445 -11.30225 -11.16543 -11.08266 -10.90634 -10.62348 -10.52420 -10.20985 -9.70418 -9.46574 -9.34810 -9.25310 -8.70967 -8.50351 -8.37449 -6.13000 -4.19069 1.60378 2.34675 2.38492 3.27203 3.34236 3.39386 3.86842 3.87751 4.37159 4.45580 4.56849 4.88134 4.91400 5.13210 5.19189 5.21398 5.25802 5.44079 5.51146 5.66211 5.81585 6.06836 6.20567 6.26292 6.31581 6.39322 6.53252 6.63464 6.85428 6.97497 7.06214 7.25666 7.37088 7.64491 7.69259 7.82478 8.04943 8.24406 8.76518 9.02834 9.46181 10.93891 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.005034 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.486537 B = 5560.470792 C = 5892.751046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C 0.155 3.845 4 C -0.269 4.269 5 C 0.533 3.467 6 O -0.525 6.525 7 O -0.352 6.352 8 C 0.223 3.777 9 H 0.047 0.953 10 C -0.518 4.518 11 H 0.069 0.931 12 C 0.062 3.938 13 N -0.888 5.888 14 Si 0.909 3.091 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.136 4.136 19 C -0.142 4.142 20 C 0.105 3.895 21 N -0.309 5.309 22 N -0.367 5.367 23 C 0.098 3.902 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.113 0.887 28 H 0.072 0.928 29 H 0.265 0.735 30 H 0.041 0.959 31 H 0.107 0.893 32 H 0.030 0.970 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.198 0.802 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 -2.948 16.812 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C 0.024 3.976 4 C -0.282 4.282 5 C 0.378 3.622 6 O -0.417 6.417 7 O -0.268 6.268 8 C 0.171 3.829 9 H 0.065 0.935 10 C -0.556 4.556 11 H 0.087 0.913 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.736 3.264 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.173 4.173 19 C -0.199 4.199 20 C -0.083 4.083 21 N -0.128 5.128 22 N -0.147 5.147 23 C -0.043 4.043 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.215 0.785 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.284 -2.707 17.736 17.944 hybrid contribution -0.286 0.213 -1.378 1.423 sum -0.002 -2.494 16.358 16.547 Atomic orbital electron populations 1.21648 0.93441 1.02447 1.02326 1.20461 0.97120 0.88402 1.04816 1.21476 0.95142 0.94746 0.86282 1.19421 1.20401 0.96653 0.91689 1.19761 0.74050 0.83128 0.85306 1.90722 1.44837 1.21350 1.84789 1.86519 1.77407 1.44178 1.18677 1.20638 0.94821 0.95697 0.71773 0.93493 1.21103 1.48071 0.94322 0.92108 0.91302 1.24870 0.95054 0.96388 0.97633 1.69905 1.48964 1.20129 1.13659 0.86262 0.78002 0.81994 0.80142 1.19487 1.20784 1.20833 1.22011 0.97656 0.94687 1.02995 1.21850 0.99644 0.99425 0.98973 1.24229 0.95214 0.97573 0.91249 1.77184 1.23079 0.99045 1.13536 1.48271 1.50397 1.09959 1.06055 1.21902 1.03040 1.01709 0.77623 0.91339 0.91491 0.93382 0.86838 0.90938 0.92548 0.94061 0.87456 0.95049 0.92819 0.94815 0.78517 0.90503 0.88963 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.07 -0.84 5.39 -27.88 -0.15 -0.99 16 3 C 0.16 2.30 6.26 -81.59 -0.51 1.79 16 4 C -0.27 -4.84 6.13 -105.08 -0.64 -5.49 16 5 C 0.53 11.54 6.41 34.41 0.22 11.76 16 6 O -0.53 -11.91 12.02 -19.28 -0.23 -12.14 16 7 O -0.35 -8.52 9.65 -40.63 -0.39 -8.91 16 8 C 0.22 5.97 2.25 -27.88 -0.06 5.90 16 9 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 10 C -0.52 -14.56 8.90 -34.44 -0.31 -14.86 16 11 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 12 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 13 N -0.89 -25.14 11.29 55.43 0.63 -24.52 16 14 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.14 -3.40 5.49 -26.73 -0.15 -3.55 16 19 C -0.14 -3.14 8.56 37.16 0.32 -2.82 16 20 C 0.10 1.72 11.87 -16.97 -0.20 1.52 16 21 N -0.31 -4.79 12.50 30.87 0.39 -4.40 16 22 N -0.37 -4.85 3.98 -63.33 -0.25 -5.11 16 23 C 0.10 0.76 11.06 59.84 0.66 1.42 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.11 1.65 6.50 -51.93 -0.34 1.31 16 28 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 34 H 0.03 0.73 6.06 -51.93 -0.31 0.41 16 35 H 0.20 2.90 8.06 -52.48 -0.42 2.48 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.49 7.62 -51.93 -0.40 0.10 16 LS Contribution 317.75 15.07 4.79 4.79 Total: -1.00 -31.92 317.75 -6.10 -38.02 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.46 Total: 1.06 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.55 Total: -4.92 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.76 Total: -34.03 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.62 Total: -21.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.92 -6.10 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.029 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds