Wall clock time and date at job start Mon Mar 30 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47086 * 2 1 4 4 C 1.38122 * 126.29676 * 270.00049 * 3 2 1 5 5 C 1.47292 * 126.42555 * 359.97358 * 4 3 2 6 6 O 1.21524 * 119.99719 * 359.97438 * 5 4 3 7 7 O 1.34752 * 119.99747 * 180.02562 * 5 4 3 8 8 C 1.45201 * 116.99598 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47488 * 30.00261 * 8 7 5 10 10 C 1.50703 * 109.46994 * 150.00034 * 8 7 5 11 11 H 1.07998 * 119.99948 * 0.02562 * 10 8 7 12 12 C 1.37883 * 119.99901 * 179.97438 * 10 8 7 13 13 N 1.31514 * 119.99866 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99806 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47316 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47182 * 120.00052 * 14 12 10 17 17 H 1.48492 * 109.47189 * 240.00072 * 14 12 10 18 18 C 1.53006 * 109.47339 * 270.00121 * 8 7 5 19 19 C 1.52997 * 109.47127 * 64.99923 * 18 8 7 20 20 C 1.41334 * 107.14858 * 180.23730 * 4 3 2 21 21 N 1.30434 * 108.01494 * 359.58946 * 20 4 3 22 22 N 1.34226 * 126.29354 * 89.99113 * 3 2 1 23 23 C 1.46494 * 125.74542 * 0.02562 * 22 3 2 24 24 H 1.09005 * 109.46663 * 60.00717 * 1 2 3 25 25 H 1.09005 * 109.46677 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47916 * 300.00110 * 1 2 3 27 27 H 1.08998 * 109.47565 * 239.99550 * 2 1 3 28 28 H 1.08998 * 109.47187 * 119.99653 * 2 1 3 29 29 H 0.97000 * 119.99365 * 179.97438 * 13 12 10 30 30 H 1.08998 * 109.46505 * 304.99794 * 18 8 7 31 31 H 1.08996 * 109.46884 * 185.00675 * 18 8 7 32 32 H 1.09002 * 109.47153 * 180.02562 * 19 18 8 33 33 H 1.09001 * 109.46832 * 60.00321 * 19 18 8 34 34 H 1.09004 * 109.47261 * 300.00303 * 19 18 8 35 35 H 1.08004 * 125.99567 * 179.75602 * 20 4 3 36 36 H 1.09002 * 109.47427 * 89.99571 * 23 22 3 37 37 H 1.09004 * 109.47148 * 209.99618 * 23 22 3 38 38 H 1.08998 * 109.47235 * 329.99522 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3049 2.1917 -1.1132 5 6 2.1595 1.7791 -2.5197 6 8 1.7653 0.6612 -2.7872 7 8 2.4647 2.6409 -3.5096 8 6 2.2980 2.1661 -4.8716 9 1 1.4935 1.4314 -4.9044 10 6 1.9552 3.3267 -5.7698 11 1 1.8714 4.3216 -5.3582 12 6 1.7495 3.1184 -7.1171 13 7 1.8520 1.9068 -7.6184 14 14 1.3239 4.5568 -8.2303 15 1 1.2687 5.8047 -7.4273 16 1 2.3622 4.6920 -9.2834 17 1 0.0031 4.3174 -8.8652 18 6 3.5996 1.5188 -5.3490 19 6 3.8823 0.2672 -4.5158 20 6 2.7552 3.4487 -0.6496 21 7 2.7412 3.4263 0.6545 22 7 2.2970 2.1700 1.0819 23 6 2.1467 1.7440 2.4754 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7069 1.7603 -8.5662 30 1 4.4209 2.2259 -5.2327 31 1 3.5041 1.2425 -6.3990 32 1 4.8098 -0.1937 -4.8556 33 1 3.0609 -0.4399 -4.6321 34 1 3.9778 0.5436 -3.4657 35 1 3.0555 4.2825 -1.2669 36 1 3.0784 1.2960 2.8209 37 1 1.9069 2.6077 3.0956 38 1 1.3430 1.0112 2.5467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:02 Heat of formation + Delta-G solvation = -46.153441 kcal Electronic energy + Delta-G solvation = -20716.378505 eV Core-core repulsion = 17559.559030 eV Total energy + Delta-G solvation = -3156.819475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.56324 -40.80050 -37.45561 -35.56449 -35.16377 -33.97836 -33.26369 -30.51063 -29.30633 -28.07131 -25.47037 -24.82817 -23.70688 -22.32203 -21.34538 -20.43227 -18.94083 -18.43813 -17.53189 -17.06613 -16.69022 -16.40283 -16.23972 -15.42484 -15.22037 -14.81901 -14.71773 -14.30062 -13.98985 -13.59503 -13.50728 -13.33201 -13.26537 -13.21210 -13.03869 -12.79037 -12.63229 -12.50391 -12.21798 -12.10602 -11.71334 -11.70400 -11.35771 -11.09067 -10.75319 -10.48218 -10.43156 -9.75689 -8.24034 -6.39823 0.36066 1.03039 1.34424 1.43636 1.43755 1.57819 2.19723 2.30257 2.49453 3.05619 3.43606 3.56820 3.86210 4.10890 4.27596 4.29785 4.41403 4.41984 4.45010 4.49355 4.56154 4.65885 4.66251 4.73151 4.90787 4.96633 5.12977 5.16922 5.27906 5.29762 5.32892 5.47409 5.57034 5.72769 5.84349 6.04196 6.21345 6.44280 6.66193 7.14480 7.33889 8.83078 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.005034 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.486537 B = 5560.470792 C = 5892.751046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C 0.172 3.828 4 C -0.311 4.311 5 C 0.528 3.472 6 O -0.544 6.544 7 O -0.363 6.363 8 C 0.228 3.772 9 H 0.008 0.992 10 C -0.548 4.548 11 H 0.063 0.937 12 C 0.019 3.981 13 N -0.914 5.914 14 Si 0.979 3.021 15 H -0.266 1.266 16 H -0.271 1.271 17 H -0.276 1.276 18 C -0.129 4.129 19 C -0.127 4.127 20 C 0.098 3.902 21 N -0.316 5.316 22 N -0.354 5.354 23 C 0.082 3.918 24 H 0.029 0.971 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.270 0.730 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.034 0.966 35 H 0.203 0.797 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -3.026 18.856 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 C 0.037 3.963 4 C -0.324 4.324 5 C 0.375 3.625 6 O -0.436 6.436 7 O -0.279 6.279 8 C 0.175 3.825 9 H 0.026 0.974 10 C -0.585 4.585 11 H 0.081 0.919 12 C -0.181 4.181 13 N -0.552 5.552 14 Si 0.802 3.198 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.201 1.201 18 C -0.167 4.167 19 C -0.184 4.184 20 C -0.089 4.089 21 N -0.136 5.136 22 N -0.132 5.132 23 C -0.057 4.057 24 H 0.048 0.952 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.219 0.781 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.366 -2.783 19.833 20.030 hybrid contribution -0.338 0.165 -1.843 1.881 sum 0.029 -2.618 17.990 18.179 Atomic orbital electron populations 1.21627 0.92659 1.03594 1.01555 1.20564 0.97630 0.86757 1.05721 1.21783 0.93246 0.95479 0.85806 1.19357 1.24158 0.98543 0.90294 1.20356 0.73345 0.82670 0.86175 1.90699 1.45784 1.21954 1.85196 1.86500 1.78168 1.45032 1.18213 1.20332 0.94293 0.94621 0.73248 0.97389 1.21369 1.49552 0.94436 0.93189 0.91854 1.25756 0.94333 0.99223 0.98773 1.70020 1.48879 1.22035 1.14254 0.85197 0.78044 0.78521 0.78022 1.18978 1.19653 1.20127 1.21858 0.96888 0.95848 1.02128 1.21684 1.00384 0.97810 0.98549 1.24321 0.95370 0.97366 0.91795 1.77139 1.23245 1.00457 1.12745 1.48721 1.48126 1.08745 1.07633 1.22484 1.05465 1.03216 0.74498 0.95191 0.89442 0.90995 0.89487 0.86414 0.92091 0.93897 0.89535 0.92224 0.94232 0.94673 0.78081 0.88244 0.87681 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.89 71.98 0.71 -2.12 16 2 C -0.07 -1.52 5.39 29.85 0.16 -1.36 16 3 C 0.17 4.83 6.26 42.17 0.26 5.09 16 4 C -0.31 -11.33 6.13 -20.16 -0.12 -11.45 16 5 C 0.53 23.85 6.41 70.20 0.45 24.30 16 6 O -0.54 -25.86 12.02 19.76 0.24 -25.62 16 7 O -0.36 -18.43 9.65 -56.63 -0.55 -18.97 16 8 C 0.23 12.80 2.25 29.85 0.07 12.87 16 9 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 10 C -0.55 -31.87 8.90 25.60 0.23 -31.64 16 11 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 12 C 0.02 1.05 5.29 84.66 0.45 1.50 16 13 N -0.91 -52.88 11.29 21.45 0.24 -52.63 16 14 Si 0.98 43.68 29.54 68.60 2.03 45.71 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 C -0.13 -6.70 5.49 30.60 0.17 -6.53 16 19 C -0.13 -5.73 8.56 71.98 0.62 -5.11 16 20 C 0.10 3.24 11.87 85.66 1.02 4.26 16 21 N -0.32 -9.35 12.50 -56.25 -0.70 -10.06 16 22 N -0.35 -8.41 3.98 -354.27 -1.41 -9.82 16 23 C 0.08 0.91 11.06 127.77 1.41 2.32 16 24 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.09 1.45 8.14 -2.38 -0.02 1.44 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 2.49 6.50 -2.39 -0.02 2.48 16 28 H 0.12 1.57 7.69 -2.39 -0.02 1.55 16 29 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 4.85 5.95 -2.39 -0.01 4.84 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.86 7.79 -2.39 -0.02 1.84 16 34 H 0.03 1.54 6.06 -2.38 -0.01 1.53 16 35 H 0.20 6.12 8.06 -2.91 -0.02 6.10 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.12 0.67 7.62 -2.39 -0.02 0.65 16 Total: -1.00 -72.18 317.75 6.32 -65.86 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.05 Total: 13.39 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.42 Total: -7.86 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.87 Total: -72.51 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -0.31 Total: -44.59 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.18 6.32 -65.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.708 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds