Wall clock time and date at job start Mon Mar 30 2020 05:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38116 * 126.29828 * 269.99931 * 3 2 1 5 5 C 1.47292 * 126.42791 * 0.02562 * 4 3 2 6 6 O 1.21527 * 119.99796 * 0.02562 * 5 4 3 7 7 O 1.34746 * 120.00079 * 179.97438 * 5 4 3 8 8 C 1.45205 * 116.99792 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47154 * 329.99786 * 8 7 5 10 10 C 1.50704 * 109.47247 * 209.99871 * 8 7 5 11 11 H 1.08008 * 119.99874 * 0.02562 * 10 8 7 12 12 C 1.37872 * 120.00209 * 180.02562 * 10 8 7 13 13 N 1.31511 * 120.00153 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99825 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47085 * 90.00081 * 14 12 10 16 16 H 1.48504 * 109.46975 * 209.99801 * 14 12 10 17 17 H 1.48497 * 109.47278 * 329.99955 * 14 12 10 18 18 C 1.52997 * 109.46986 * 90.00122 * 8 7 5 19 19 C 1.53003 * 109.47207 * 294.99829 * 18 8 7 20 20 C 1.41346 * 107.14838 * 179.97438 * 4 3 2 21 21 N 1.30431 * 108.01051 * 0.02562 * 20 4 3 22 22 N 1.34224 * 126.29414 * 89.68851 * 3 2 1 23 23 C 1.46505 * 125.74418 * 0.02562 * 22 3 2 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 29 29 H 0.96999 * 120.00450 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.47142 * 54.99843 * 18 8 7 31 31 H 1.09006 * 109.46943 * 174.99760 * 18 8 7 32 32 H 1.08998 * 109.46690 * 300.00347 * 19 18 8 33 33 H 1.08996 * 109.46529 * 60.00262 * 19 18 8 34 34 H 1.09001 * 109.47153 * 180.02562 * 19 18 8 35 35 H 1.08004 * 125.99314 * 179.97438 * 20 4 3 36 36 H 1.08993 * 109.47131 * 89.99523 * 23 22 3 37 37 H 1.08998 * 109.46874 * 209.99901 * 23 22 3 38 38 H 1.09007 * 109.46498 * 329.99217 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3049 2.1917 -1.1131 5 6 2.1586 1.7795 -2.5196 6 8 1.7626 0.6622 -2.7873 7 8 2.4630 2.6416 -3.5095 8 6 2.2953 2.1671 -4.8716 9 1 2.4599 1.0901 -4.9040 10 6 3.2914 2.8548 -5.7693 11 1 3.9818 3.5760 -5.3573 12 6 3.3215 2.5634 -7.1165 13 7 2.4812 1.6848 -7.6182 14 14 4.5568 3.4153 -8.2291 15 1 5.8081 2.6174 -8.2818 16 1 3.9897 3.5376 -9.5961 17 1 4.8545 4.7681 -7.6938 18 6 0.8763 2.4808 -5.3498 19 6 -0.1304 1.6845 -4.5170 20 6 2.7494 3.4508 -0.6495 21 7 2.7410 3.4262 0.6546 22 7 2.2916 2.1719 1.0818 23 6 2.1344 1.7482 2.4754 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.5026 1.4795 -8.5659 30 1 0.6811 3.5469 -5.2338 31 1 0.7776 2.2056 -6.3999 32 1 0.0649 0.6184 -4.6330 33 1 -0.0316 1.9598 -3.4670 34 1 -1.1413 1.9076 -4.8580 35 1 3.0451 4.2862 -1.2667 36 1 3.0643 1.3009 2.8263 37 1 1.8915 2.6131 3.0928 38 1 1.3302 1.0156 2.5439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:05 Heat of formation + Delta-G solvation = -26.975864 kcal Electronic energy + Delta-G solvation = -20742.164753 eV Core-core repulsion = 17586.176880 eV Total energy + Delta-G solvation = -3155.987873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35669 -39.03670 -35.62739 -34.30691 -33.34951 -32.92294 -31.27605 -29.28266 -27.56934 -26.83627 -24.08019 -23.17614 -22.27845 -20.83627 -19.64380 -19.05228 -17.33951 -16.52378 -15.93216 -15.75926 -15.15004 -14.89189 -14.48307 -14.35061 -14.11430 -13.34807 -13.10517 -12.84748 -12.76551 -12.69603 -12.28094 -11.96016 -11.68394 -11.38925 -11.29475 -11.20098 -11.06280 -10.88832 -10.59236 -10.56124 -10.21417 -9.69870 -9.47334 -9.35401 -9.24905 -8.71148 -8.50461 -8.36929 -6.12647 -4.18912 1.60409 2.34777 2.38417 3.28551 3.34126 3.38290 3.86509 3.88095 4.37223 4.45423 4.56869 4.88031 4.91520 5.13127 5.19377 5.21332 5.25316 5.43516 5.50745 5.65965 5.81084 6.06612 6.19094 6.25730 6.32239 6.39422 6.53266 6.63473 6.85467 6.97574 7.06308 7.25823 7.37195 7.64550 7.69181 7.82515 8.05027 8.24523 8.76419 9.02745 9.46322 10.94178 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.005122 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.911662 B = 5465.581146 C = 6054.893406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C 0.155 3.845 4 C -0.269 4.269 5 C 0.533 3.467 6 O -0.525 6.525 7 O -0.352 6.352 8 C 0.224 3.776 9 H 0.047 0.953 10 C -0.519 4.519 11 H 0.068 0.932 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.909 3.091 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.135 4.135 19 C -0.141 4.141 20 C 0.105 3.895 21 N -0.309 5.309 22 N -0.367 5.367 23 C 0.098 3.902 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.265 0.735 30 H 0.040 0.960 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.198 0.802 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 -1.809 16.799 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C 0.024 3.976 4 C -0.282 4.282 5 C 0.378 3.622 6 O -0.417 6.417 7 O -0.268 6.268 8 C 0.171 3.829 9 H 0.065 0.935 10 C -0.557 4.557 11 H 0.086 0.914 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.736 3.264 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.173 4.173 19 C -0.199 4.199 20 C -0.083 4.083 21 N -0.128 5.128 22 N -0.147 5.147 23 C -0.043 4.043 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.215 0.785 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.996 -1.556 17.719 18.038 hybrid contribution 0.436 -0.038 -1.368 1.436 sum -2.560 -1.594 16.351 16.627 Atomic orbital electron populations 1.21645 0.93474 1.02439 1.02267 1.20461 0.97075 0.88419 1.04865 1.21471 0.95192 0.94698 0.86282 1.19422 1.20526 0.96526 0.91688 1.19761 0.74034 0.83147 0.85307 1.90723 1.44538 1.21646 1.84791 1.86518 1.77406 1.44181 1.18681 1.20630 0.93776 0.96726 0.71758 0.93508 1.21063 1.17505 1.24989 0.92133 0.91357 1.24863 0.96222 0.95205 0.97615 1.69891 1.36250 1.32778 1.13750 0.86314 0.80781 0.79887 0.79395 1.20478 1.21022 1.19604 1.22010 0.94452 0.97878 1.02995 1.21847 0.98001 1.01041 0.98972 1.24232 0.95196 0.97593 0.91247 1.77179 1.22937 0.99188 1.13541 1.48271 1.50306 1.10043 1.06060 1.21904 1.03020 1.01731 0.77616 0.91493 0.93404 0.91388 0.86811 0.90915 0.92490 0.94069 0.87463 0.92827 0.94794 0.95074 0.78517 0.90498 0.88971 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 37.16 0.37 -1.20 16 2 C -0.07 -0.85 5.38 -27.88 -0.15 -1.00 16 3 C 0.16 2.30 6.26 -81.59 -0.51 1.79 16 4 C -0.27 -4.84 6.13 -105.08 -0.64 -5.48 16 5 C 0.53 11.54 6.41 34.41 0.22 11.76 16 6 O -0.53 -11.91 12.02 -19.29 -0.23 -12.14 16 7 O -0.35 -8.52 9.65 -40.61 -0.39 -8.91 16 8 C 0.22 5.98 2.25 -27.88 -0.06 5.92 16 9 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 10 C -0.52 -14.59 8.90 -34.44 -0.31 -14.90 16 11 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 12 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 13 N -0.89 -25.15 11.29 55.43 0.63 -24.53 16 14 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16 19 C -0.14 -3.12 8.56 37.16 0.32 -2.81 16 20 C 0.10 1.72 11.87 -16.96 -0.20 1.51 16 21 N -0.31 -4.79 12.50 30.87 0.39 -4.40 16 22 N -0.37 -4.85 3.98 -63.33 -0.25 -5.11 16 23 C 0.10 0.76 11.06 59.85 0.66 1.42 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.11 1.66 6.51 -51.93 -0.34 1.32 16 28 H 0.07 0.65 7.71 -51.93 -0.40 0.25 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 32 H 0.05 1.23 7.79 -51.93 -0.40 0.82 16 33 H 0.03 0.73 6.06 -51.93 -0.31 0.41 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.20 2.90 8.06 -52.48 -0.42 2.48 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.49 7.63 -51.93 -0.40 0.10 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -31.90 317.76 -6.11 -38.01 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.46 Total: 1.03 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.55 Total: -4.88 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.76 Total: -34.03 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.62 Total: -21.05 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.90 -6.11 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.029 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds