Wall clock time and date at job start Mon Mar 30 2020 05:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38116 * 126.29828 * 269.99931 * 3 2 1 5 5 C 1.47292 * 126.42791 * 0.02562 * 4 3 2 6 6 O 1.21527 * 119.99796 * 0.02562 * 5 4 3 7 7 O 1.34746 * 120.00079 * 179.97438 * 5 4 3 8 8 C 1.45205 * 116.99792 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47154 * 329.99786 * 8 7 5 10 10 C 1.50704 * 109.47247 * 209.99871 * 8 7 5 11 11 H 1.08008 * 119.99874 * 0.02562 * 10 8 7 12 12 C 1.37872 * 120.00209 * 180.02562 * 10 8 7 13 13 N 1.31511 * 120.00153 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 119.99825 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47085 * 90.00081 * 14 12 10 16 16 H 1.48504 * 109.46975 * 209.99801 * 14 12 10 17 17 H 1.48497 * 109.47278 * 329.99955 * 14 12 10 18 18 C 1.52997 * 109.46986 * 90.00122 * 8 7 5 19 19 C 1.53003 * 109.47207 * 294.99829 * 18 8 7 20 20 C 1.41346 * 107.14838 * 179.97438 * 4 3 2 21 21 N 1.30431 * 108.01051 * 0.02562 * 20 4 3 22 22 N 1.34224 * 126.29414 * 89.68851 * 3 2 1 23 23 C 1.46505 * 125.74418 * 0.02562 * 22 3 2 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 29 29 H 0.96999 * 120.00450 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.47142 * 54.99843 * 18 8 7 31 31 H 1.09006 * 109.46943 * 174.99760 * 18 8 7 32 32 H 1.08998 * 109.46690 * 300.00347 * 19 18 8 33 33 H 1.08996 * 109.46529 * 60.00262 * 19 18 8 34 34 H 1.09001 * 109.47153 * 180.02562 * 19 18 8 35 35 H 1.08004 * 125.99314 * 179.97438 * 20 4 3 36 36 H 1.08993 * 109.47131 * 89.99523 * 23 22 3 37 37 H 1.08998 * 109.46874 * 209.99901 * 23 22 3 38 38 H 1.09007 * 109.46498 * 329.99217 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3049 2.1917 -1.1131 5 6 2.1586 1.7795 -2.5196 6 8 1.7626 0.6622 -2.7873 7 8 2.4630 2.6416 -3.5095 8 6 2.2953 2.1671 -4.8716 9 1 2.4599 1.0901 -4.9040 10 6 3.2914 2.8548 -5.7693 11 1 3.9818 3.5760 -5.3573 12 6 3.3215 2.5634 -7.1165 13 7 2.4812 1.6848 -7.6182 14 14 4.5568 3.4153 -8.2291 15 1 5.8081 2.6174 -8.2818 16 1 3.9897 3.5376 -9.5961 17 1 4.8545 4.7681 -7.6938 18 6 0.8763 2.4808 -5.3498 19 6 -0.1304 1.6845 -4.5170 20 6 2.7494 3.4508 -0.6495 21 7 2.7410 3.4262 0.6546 22 7 2.2916 2.1719 1.0818 23 6 2.1344 1.7482 2.4754 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.5026 1.4795 -8.5659 30 1 0.6811 3.5469 -5.2338 31 1 0.7776 2.2056 -6.3999 32 1 0.0649 0.6184 -4.6330 33 1 -0.0316 1.9598 -3.4670 34 1 -1.1413 1.9076 -4.8580 35 1 3.0451 4.2862 -1.2667 36 1 3.0643 1.3009 2.8263 37 1 1.8915 2.6131 3.0928 38 1 1.3302 1.0156 2.5439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787089821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:05 Heat of formation + Delta-G solvation = -46.108976 kcal Electronic energy + Delta-G solvation = -20742.994427 eV Core-core repulsion = 17586.176880 eV Total energy + Delta-G solvation = -3156.817547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.56405 -40.80014 -37.45370 -35.56680 -35.16007 -33.97364 -33.26626 -30.49985 -29.31349 -28.06993 -25.48214 -24.79348 -23.72306 -22.32393 -21.34090 -20.43071 -18.93623 -18.44430 -17.48862 -17.11939 -16.68250 -16.39546 -16.23241 -15.42641 -15.22841 -14.80352 -14.71874 -14.28701 -13.98272 -13.64724 -13.46594 -13.31462 -13.25669 -13.22623 -13.05064 -12.76708 -12.64276 -12.51289 -12.19136 -12.10579 -11.71293 -11.69508 -11.37796 -11.09135 -10.74701 -10.48189 -10.43055 -9.75629 -8.23658 -6.39664 0.36163 1.03110 1.34423 1.43793 1.45070 1.56868 2.19704 2.30307 2.49667 3.05942 3.43673 3.56877 3.86235 4.11005 4.28179 4.29975 4.41101 4.42111 4.45216 4.49439 4.56426 4.65784 4.66583 4.73679 4.91128 4.97370 5.12400 5.17396 5.27649 5.31582 5.32965 5.47478 5.56978 5.72804 5.84337 6.04243 6.21491 6.44374 6.66069 7.14549 7.34011 8.83218 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.005122 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.911662 B = 5465.581146 C = 6054.893406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C 0.172 3.828 4 C -0.311 4.311 5 C 0.528 3.472 6 O -0.544 6.544 7 O -0.363 6.363 8 C 0.229 3.771 9 H 0.008 0.992 10 C -0.549 4.549 11 H 0.064 0.936 12 C 0.019 3.981 13 N -0.914 5.914 14 Si 0.978 3.022 15 H -0.273 1.273 16 H -0.275 1.275 17 H -0.264 1.264 18 C -0.129 4.129 19 C -0.126 4.126 20 C 0.098 3.902 21 N -0.316 5.316 22 N -0.354 5.354 23 C 0.082 3.918 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.032 0.968 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.270 0.730 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.203 0.797 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -1.805 18.842 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 C 0.037 3.963 4 C -0.324 4.324 5 C 0.374 3.626 6 O -0.436 6.436 7 O -0.279 6.279 8 C 0.175 3.825 9 H 0.026 0.974 10 C -0.587 4.587 11 H 0.082 0.918 12 C -0.181 4.181 13 N -0.552 5.552 14 Si 0.802 3.198 15 H -0.199 1.199 16 H -0.200 1.200 17 H -0.189 1.189 18 C -0.167 4.167 19 C -0.183 4.183 20 C -0.088 4.088 21 N -0.136 5.136 22 N -0.132 5.132 23 C -0.057 4.057 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.219 0.781 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.104 -1.547 19.815 20.116 hybrid contribution 0.449 -0.114 -1.831 1.889 sum -2.655 -1.662 17.984 18.255 Atomic orbital electron populations 1.21622 0.92445 1.03604 1.01685 1.20564 0.97807 0.86738 1.05615 1.21780 0.93294 0.95421 0.85808 1.19358 1.24298 0.98406 0.90291 1.20356 0.73332 0.82687 0.86176 1.90700 1.45524 1.22209 1.85197 1.86498 1.78265 1.44936 1.18213 1.20326 0.94605 0.94295 0.73239 0.97399 1.21342 1.18430 1.25674 0.93212 0.91826 1.25752 0.97949 0.95596 0.98758 1.70009 1.37360 1.33510 1.14302 0.85249 0.78232 0.78918 0.77413 1.19855 1.19970 1.18875 1.21857 0.94471 0.98245 1.02124 1.21676 0.98619 0.99508 0.98542 1.24323 0.95341 0.97392 0.91791 1.77134 1.23099 1.00605 1.12752 1.48720 1.48044 1.08832 1.07635 1.22485 1.05391 1.03273 0.74502 0.89506 0.90980 0.94899 0.89640 0.86532 0.92083 0.93927 0.89540 0.94260 0.94667 0.92277 0.78078 0.88364 0.87633 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.89 71.98 0.71 -2.02 16 2 C -0.07 -1.53 5.38 29.85 0.16 -1.37 16 3 C 0.17 4.83 6.26 42.16 0.26 5.10 16 4 C -0.31 -11.33 6.13 -20.16 -0.12 -11.45 16 5 C 0.53 23.84 6.41 70.20 0.45 24.29 16 6 O -0.54 -25.85 12.02 19.75 0.24 -25.61 16 7 O -0.36 -18.42 9.65 -56.56 -0.55 -18.96 16 8 C 0.23 12.82 2.25 29.85 0.07 12.89 16 9 H 0.01 0.51 7.16 -2.39 -0.02 0.50 16 10 C -0.55 -31.92 8.90 25.60 0.23 -31.69 16 11 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 12 C 0.02 1.07 5.29 84.65 0.45 1.52 16 13 N -0.91 -52.89 11.29 21.44 0.24 -52.65 16 14 Si 0.98 43.65 29.54 68.60 2.03 45.67 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 C -0.13 -6.68 5.49 30.59 0.17 -6.52 16 19 C -0.13 -5.69 8.56 71.98 0.62 -5.08 16 20 C 0.10 3.24 11.87 85.67 1.02 4.26 16 21 N -0.32 -9.35 12.50 -56.24 -0.70 -10.05 16 22 N -0.35 -8.41 3.98 -354.26 -1.41 -9.82 16 23 C 0.08 0.91 11.06 127.77 1.41 2.33 16 24 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 2.48 6.51 -2.39 -0.02 2.46 16 28 H 0.12 1.58 7.71 -2.39 -0.02 1.57 16 29 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 4.85 5.95 -2.38 -0.01 4.84 16 32 H 0.04 1.85 7.79 -2.39 -0.02 1.83 16 33 H 0.03 1.55 6.06 -2.39 -0.01 1.53 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.20 6.12 8.06 -2.91 -0.02 6.10 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.12 0.66 7.63 -2.38 -0.02 0.65 16 Total: -1.00 -72.07 317.76 6.32 -65.75 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.05 Total: 13.42 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 5.42 Total: -7.74 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.87 Total: -72.53 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.31 Total: -44.58 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -72.07 6.32 -65.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.646 kcal (2) G-P(sol) polarization free energy of solvation -72.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds