Wall clock time and date at job start Mon Mar 30 2020 05:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46881 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.46780 * 180.02562 * 17 16 14 19 19 N 1.46501 * 109.46977 * 180.02562 * 18 17 16 20 20 C 1.34952 * 126.03615 * 124.99763 * 19 18 17 21 21 C 1.35322 * 107.74359 * 179.97438 * 20 19 18 22 22 C 1.39866 * 107.92257 * 0.02562 * 21 20 19 23 23 N 1.30843 * 108.20222 * 359.73466 * 22 21 20 24 24 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 25 25 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 26 26 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 28 28 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 30 30 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 31 31 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 32 32 H 1.08990 * 109.47643 * 300.00395 * 17 16 14 33 33 H 1.08999 * 109.46713 * 60.00671 * 17 16 14 34 34 H 1.08995 * 109.47276 * 300.00082 * 18 17 16 35 35 H 1.08999 * 109.46958 * 60.00812 * 18 17 16 36 36 H 1.07994 * 126.12404 * 359.96173 * 20 19 18 37 37 H 1.08000 * 126.03595 * 180.02562 * 21 20 19 38 38 H 1.07992 * 125.89915 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 6 -1.3615 4.0591 -2.2591 18 6 -1.8342 4.7664 -3.5309 19 7 -3.1445 5.3764 -3.2921 20 6 -3.4622 6.6744 -3.4806 21 6 -4.7643 6.8328 -3.1480 22 6 -5.2591 5.5892 -2.7419 23 7 -4.2905 4.7143 -2.8330 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8292 -0.0558 2.9526 30 1 0.7243 4.1969 -2.7809 31 1 -0.0713 2.6985 -3.3193 32 1 -2.0783 3.2846 -1.9868 33 1 -1.2831 4.7831 -1.4481 34 1 -1.1175 5.5409 -3.8037 35 1 -1.9126 4.0420 -4.3416 36 1 -2.7964 7.4481 -3.8334 37 1 -5.3227 7.7563 -3.1889 38 1 -6.2677 5.3855 -2.4138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787091865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:04 Heat of formation + Delta-G solvation = -26.097362 kcal Electronic energy + Delta-G solvation = -19751.763757 eV Core-core repulsion = 16595.813978 eV Total energy + Delta-G solvation = -3155.949779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20902 -39.65780 -36.21210 -34.99180 -33.50513 -31.80096 -31.27809 -30.10919 -27.65449 -26.75421 -23.54169 -22.73185 -21.22794 -20.72520 -20.37005 -19.37320 -17.55149 -16.77790 -16.63005 -16.07233 -15.33317 -15.23791 -14.56193 -14.43519 -14.13463 -13.75311 -13.01820 -12.93955 -12.89667 -12.51473 -12.31043 -11.89248 -11.72039 -11.43682 -11.26168 -11.17533 -10.98891 -10.94590 -10.68143 -10.63499 -10.28895 -9.79846 -9.61604 -9.52709 -9.36526 -8.80767 -8.72120 -8.46450 -6.19507 -4.26742 1.79410 2.38049 2.74786 3.01625 3.23195 3.28784 3.32476 3.64610 4.29496 4.38596 4.66305 4.81342 4.89063 4.97564 5.11815 5.13213 5.25784 5.42774 5.53661 5.62847 5.86362 5.88158 5.97366 6.21938 6.24143 6.30055 6.46702 6.53645 6.87004 6.89025 6.97583 7.17085 7.27001 7.60512 7.61131 7.73465 7.95460 8.15541 8.63609 8.88859 9.38555 10.87301 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.040452 B = 0.003372 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.014203 B = 8301.235260 C = 8631.909442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.358 6.358 14 C 0.450 3.550 15 O -0.516 6.516 16 C -0.114 4.114 17 C -0.119 4.119 18 C 0.133 3.867 19 N -0.369 5.369 20 C 0.052 3.948 21 C -0.279 4.279 22 C 0.039 3.961 23 N -0.290 5.290 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.108 0.892 29 H 0.266 0.734 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.172 0.828 37 H 0.145 0.855 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.807 10.197 -12.030 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.274 6.274 14 C 0.293 3.707 15 O -0.406 6.406 16 C -0.153 4.153 17 C -0.157 4.157 18 C 0.012 3.988 19 N -0.151 5.151 20 C -0.095 4.095 21 C -0.309 4.309 22 C -0.147 4.147 23 N -0.111 5.111 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.190 0.810 37 H 0.163 0.837 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.463 8.780 -11.398 17.790 hybrid contribution 0.654 0.833 0.160 1.071 sum -9.809 9.613 -11.238 17.746 Atomic orbital electron populations 1.21854 0.98321 0.98998 1.00758 1.22013 0.92657 0.99379 1.03305 1.20663 0.94969 0.88781 0.78710 0.93558 1.21046 0.89715 1.39113 1.06143 0.91369 1.24899 0.99252 0.94754 0.95095 1.69896 1.35392 1.37909 1.09327 0.86284 0.83888 0.77699 0.78328 1.20421 1.20934 1.19601 1.86465 1.34289 1.62486 1.44146 1.23135 0.80896 0.77168 0.89513 1.90628 1.55444 1.58466 1.36023 1.21214 0.97166 1.00966 0.95932 1.21637 0.96131 1.01382 0.96583 1.21789 0.79195 0.98750 0.99072 1.48779 1.09561 1.06318 1.50453 1.22594 0.97608 0.87494 1.01784 1.21502 0.95227 0.99704 1.14457 1.23903 0.99049 0.91573 1.00147 1.77414 0.92274 1.21477 1.19979 0.92842 0.94958 0.94822 0.93997 0.87403 0.92378 0.88095 0.88076 0.89441 0.90431 0.88368 0.89442 0.81032 0.83718 0.80192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.57 37.16 0.32 -2.85 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.88 2.25 -27.88 -0.06 5.82 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.58 8.90 -34.44 -0.31 -14.89 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.13 11.31 55.43 0.63 -24.51 16 9 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 O -0.36 -8.33 9.81 -39.27 -0.39 -8.72 16 14 C 0.45 9.00 6.41 36.00 0.23 9.24 16 15 O -0.52 -11.81 13.12 -18.75 -0.25 -12.05 16 16 C -0.11 -1.50 5.81 -27.88 -0.16 -1.66 16 17 C -0.12 -1.50 4.69 -26.73 -0.13 -1.63 16 18 C 0.13 1.24 6.51 -4.04 -0.03 1.21 16 19 N -0.37 -4.23 3.68 -61.36 -0.23 -4.46 16 20 C 0.05 0.48 11.45 -17.22 -0.20 0.29 16 21 C -0.28 -2.66 10.80 -40.01 -0.43 -3.10 16 22 C 0.04 0.43 12.03 -17.36 -0.21 0.23 16 23 N -0.29 -3.96 12.42 30.62 0.38 -3.58 16 24 H 0.05 1.25 7.80 -51.93 -0.40 0.85 16 25 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.11 2.93 5.96 -51.93 -0.31 2.62 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 33 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.10 0.61 8.07 -51.93 -0.42 0.19 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 321.63 15.07 4.85 4.85 Total: -1.00 -33.20 321.63 -6.82 -40.02 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.59 Total: 1.78 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.21 Total: -9.27 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.78 Total: -32.54 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.63 Total: -20.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.20 -6.82 -40.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787091865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.926 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds