Wall clock time and date at job start Mon Mar 30 2020 05:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47348 * 2 1 4 4 H 1.09011 * 109.46666 * 305.10483 * 3 2 1 5 5 C 1.50696 * 109.47331 * 185.10543 * 3 2 1 6 6 H 1.07993 * 120.00112 * 245.45417 * 5 3 2 7 7 C 1.37881 * 120.00231 * 65.44699 * 5 3 2 8 8 N 1.31509 * 119.99615 * 9.50417 * 7 5 3 9 9 Si 1.86796 * 119.99984 * 189.50198 * 7 5 3 10 10 H 1.48498 * 109.46986 * 84.99815 * 9 7 5 11 11 H 1.48501 * 109.46973 * 204.99477 * 9 7 5 12 12 H 1.48494 * 109.47294 * 324.99483 * 9 7 5 13 13 O 1.45198 * 109.47519 * 65.09849 * 3 2 1 14 14 C 1.34225 * 117.00363 * 270.00533 * 13 3 2 15 15 O 1.20828 * 120.00350 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00121 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47847 * 59.99562 * 16 14 13 18 18 C 1.53003 * 109.46935 * 299.99667 * 16 14 13 19 19 C 1.50703 * 109.47152 * 179.97438 * 16 14 13 20 20 C 1.35314 * 126.12740 * 34.68921 * 19 16 14 21 21 C 1.39868 * 107.91893 * 179.90584 * 20 19 16 22 22 N 1.30834 * 108.20347 * 0.36037 * 21 20 19 23 23 N 1.34950 * 126.12443 * 214.99750 * 19 16 14 24 24 C 1.46491 * 126.03918 * 359.97438 * 23 19 16 25 25 H 1.08996 * 109.47481 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47251 * 300.00796 * 1 2 3 27 27 H 1.09006 * 109.46934 * 59.99933 * 1 2 3 28 28 H 1.08997 * 109.47014 * 239.99521 * 2 1 3 29 29 H 1.09002 * 109.46653 * 119.99668 * 2 1 3 30 30 H 0.96998 * 120.00282 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47094 * 59.99734 * 18 16 14 32 32 H 1.09004 * 109.47344 * 180.02562 * 18 16 14 33 33 H 1.08999 * 109.47092 * 299.99847 * 18 16 14 34 34 H 1.08000 * 126.03815 * 0.02962 * 20 19 16 35 35 H 1.08006 * 125.90102 * 180.14550 * 21 20 19 36 36 H 1.08999 * 109.47151 * 89.99969 * 24 23 19 37 37 H 1.09003 * 109.47673 * 209.99870 * 24 23 19 38 38 H 1.09001 * 109.47678 * 330.00177 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6039 1.9820 -0.8408 5 6 3.5417 1.4443 -0.1264 6 1 4.1517 1.8081 0.6871 7 6 4.1370 0.9814 -1.2808 8 7 3.4020 0.7147 -2.3382 9 14 5.9874 0.7334 -1.3427 10 1 6.3255 -0.6070 -0.8002 11 1 6.4529 0.8298 -2.7495 12 1 6.6547 1.7800 -0.5277 13 8 1.6580 2.0910 1.2416 14 6 0.4750 2.7247 1.2593 15 8 -0.2184 2.7376 0.2698 16 6 0.0119 3.4212 2.5128 17 1 0.7293 4.1954 2.7847 18 6 -0.0966 2.4043 3.6509 19 6 -1.3363 4.0494 2.2697 20 6 -2.3192 3.5502 1.4851 21 6 -3.4008 4.4356 1.5347 22 7 -3.0760 5.4344 2.3147 23 7 -1.7772 5.2135 2.7909 24 6 -1.0296 6.0912 3.6947 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8207 0.3894 -3.1504 31 1 0.8786 1.9503 3.8266 32 1 -0.4320 2.9080 4.5575 33 1 -0.8142 1.6301 3.3791 34 1 -2.2768 2.6297 0.9218 35 1 -4.3406 4.3171 1.0157 36 1 -0.4619 6.8155 3.1106 37 1 -1.7254 6.6170 4.3485 38 1 -0.3452 5.4941 4.2974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817731503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:07 Heat of formation + Delta-G solvation = -18.225518 kcal Electronic energy + Delta-G solvation = -20833.368434 eV Core-core repulsion = 17677.760004 eV Total energy + Delta-G solvation = -3155.608430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27651 -39.57434 -35.98094 -34.23651 -33.40867 -32.87076 -31.46511 -28.99225 -27.29132 -26.67267 -24.79608 -23.22779 -21.54363 -20.96626 -19.82391 -19.05479 -17.05727 -16.84722 -16.21131 -15.54822 -15.53519 -15.04190 -14.54767 -14.36818 -13.65146 -13.31433 -13.09742 -12.88748 -12.86616 -12.58941 -12.35339 -12.09922 -11.79019 -11.57973 -11.40067 -11.20451 -11.12170 -11.00114 -10.69960 -10.51199 -10.26795 -9.86896 -9.54857 -9.37767 -9.15841 -8.85933 -8.48324 -8.28507 -6.22479 -4.26428 1.92796 2.52380 2.94862 3.04628 3.23484 3.29214 3.31679 3.64642 4.31560 4.42306 4.58965 4.98722 5.04873 5.10613 5.12751 5.24020 5.31801 5.48191 5.73658 5.76312 5.86245 6.02321 6.12699 6.17288 6.24221 6.37478 6.43936 6.80737 6.86235 6.92467 7.07496 7.10739 7.20111 7.55807 7.66111 7.81705 7.85831 8.10898 8.60980 8.87696 9.37789 10.86465 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030425 B = 0.004910 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.068442 B = 5701.829674 C = 6007.554422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.054 0.946 5 C -0.526 4.526 6 H 0.068 0.932 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.907 3.093 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 O -0.352 6.352 14 C 0.460 3.540 15 O -0.499 6.499 16 C -0.023 4.023 17 H 0.109 0.891 18 C -0.136 4.136 19 C 0.086 3.914 20 C -0.227 4.227 21 C 0.039 3.961 22 N -0.301 5.301 23 N -0.375 5.375 24 C 0.099 3.901 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.267 0.733 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.156 0.844 35 H 0.182 0.818 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 4.844 11.344 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.564 4.564 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.733 3.267 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.197 1.197 13 O -0.268 6.268 14 C 0.301 3.699 15 O -0.387 6.387 16 C -0.044 4.044 17 H 0.127 0.873 18 C -0.194 4.194 19 C -0.040 4.040 20 C -0.256 4.256 21 C -0.146 4.146 22 N -0.123 5.123 23 N -0.159 5.159 24 C -0.043 4.043 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.173 0.827 35 H 0.199 0.801 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.111 5.956 11.422 15.223 hybrid contribution 1.200 -0.862 -0.686 1.629 sum -6.911 5.094 10.736 13.746 Atomic orbital electron populations 1.21873 0.98003 0.99169 1.01100 1.21914 0.93045 0.99347 1.02234 1.20697 0.95152 0.88549 0.78798 0.92784 1.20974 0.89552 1.44012 1.01855 0.91360 1.24885 0.99033 0.95141 0.94623 1.69983 1.35992 1.43906 1.02215 0.86372 0.84102 0.78904 0.77276 1.20221 1.21073 1.19694 1.86445 1.33744 1.62405 1.44217 1.22585 0.81233 0.77376 0.88753 1.90640 1.54899 1.57746 1.35427 1.19361 0.92054 0.98523 0.94500 0.87264 1.21731 1.04122 0.98016 0.95529 1.20339 0.96058 0.88686 0.98942 1.21475 0.93022 1.04886 1.06189 1.23846 1.00034 0.92576 0.98107 1.77282 0.94083 1.23593 1.17345 1.48352 1.12111 1.16991 1.38413 1.21830 0.95903 0.94005 0.92570 0.94754 0.94567 0.92584 0.89309 0.93652 0.92360 0.89917 0.91782 0.91476 0.82656 0.80132 0.90833 0.89365 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.57 37.16 0.32 -2.66 16 2 C -0.13 -3.00 5.54 -26.73 -0.15 -3.15 16 3 C 0.22 5.65 2.11 -27.89 -0.06 5.59 16 4 H 0.05 1.56 7.10 -51.92 -0.37 1.20 16 5 C -0.53 -14.35 8.82 -34.44 -0.30 -14.65 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 7 C 0.07 1.79 5.16 -17.82 -0.09 1.70 16 8 N -0.88 -24.84 12.16 55.43 0.67 -24.17 16 9 Si 0.91 20.67 29.55 -169.99 -5.02 15.65 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 O -0.35 -7.87 9.71 -39.24 -0.38 -8.25 16 14 C 0.46 9.05 5.64 36.00 0.20 9.26 16 15 O -0.50 -10.99 10.87 -18.75 -0.20 -11.19 16 16 C -0.02 -0.34 2.84 -92.92 -0.26 -0.60 16 17 H 0.11 1.38 7.49 -51.93 -0.39 0.99 16 18 C -0.14 -1.64 9.11 37.16 0.34 -1.30 16 19 C 0.09 1.32 5.74 -82.26 -0.47 0.85 16 20 C -0.23 -3.66 9.14 -40.01 -0.37 -4.02 16 21 C 0.04 0.57 12.03 -17.37 -0.21 0.36 16 22 N -0.30 -4.63 12.58 30.62 0.39 -4.25 16 23 N -0.37 -5.27 4.01 -63.89 -0.26 -5.53 16 24 C 0.10 0.91 11.06 59.84 0.66 1.58 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.71 6.06 -51.93 -0.31 0.39 16 27 H 0.06 1.23 7.80 -51.93 -0.41 0.83 16 28 H 0.09 2.28 6.80 -51.93 -0.35 1.93 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.16 2.65 6.79 -52.49 -0.36 2.29 16 35 H 0.18 2.00 8.06 -52.48 -0.42 1.58 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.61 7.55 -51.93 -0.39 0.22 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -31.61 316.70 -5.93 -37.54 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.51 Total: 2.48 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.39 Total: -7.06 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.80 Total: -33.94 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.58 Total: -19.44 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.61 -5.93 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817731503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.316 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds