Wall clock time and date at job start Mon Mar 30 2020 05:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47348 * 2 1 4 4 H 1.09011 * 109.46666 * 305.10483 * 3 2 1 5 5 C 1.50696 * 109.47331 * 185.10543 * 3 2 1 6 6 H 1.07993 * 120.00112 * 245.45417 * 5 3 2 7 7 C 1.37881 * 120.00231 * 65.44699 * 5 3 2 8 8 N 1.31509 * 119.99615 * 9.50417 * 7 5 3 9 9 Si 1.86796 * 119.99984 * 189.50198 * 7 5 3 10 10 H 1.48498 * 109.46986 * 84.99815 * 9 7 5 11 11 H 1.48501 * 109.46973 * 204.99477 * 9 7 5 12 12 H 1.48494 * 109.47294 * 324.99483 * 9 7 5 13 13 O 1.45198 * 109.47519 * 65.09849 * 3 2 1 14 14 C 1.34225 * 117.00363 * 270.00533 * 13 3 2 15 15 O 1.20828 * 120.00350 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00121 * 180.02562 * 14 13 3 17 17 H 1.08998 * 109.47847 * 59.99562 * 16 14 13 18 18 C 1.53003 * 109.46935 * 299.99667 * 16 14 13 19 19 C 1.50703 * 109.47152 * 179.97438 * 16 14 13 20 20 C 1.35314 * 126.12740 * 34.68921 * 19 16 14 21 21 C 1.39868 * 107.91893 * 179.90584 * 20 19 16 22 22 N 1.30834 * 108.20347 * 0.36037 * 21 20 19 23 23 N 1.34950 * 126.12443 * 214.99750 * 19 16 14 24 24 C 1.46491 * 126.03918 * 359.97438 * 23 19 16 25 25 H 1.08996 * 109.47481 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47251 * 300.00796 * 1 2 3 27 27 H 1.09006 * 109.46934 * 59.99933 * 1 2 3 28 28 H 1.08997 * 109.47014 * 239.99521 * 2 1 3 29 29 H 1.09002 * 109.46653 * 119.99668 * 2 1 3 30 30 H 0.96998 * 120.00282 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.47094 * 59.99734 * 18 16 14 32 32 H 1.09004 * 109.47344 * 180.02562 * 18 16 14 33 33 H 1.08999 * 109.47092 * 299.99847 * 18 16 14 34 34 H 1.08000 * 126.03815 * 0.02962 * 20 19 16 35 35 H 1.08006 * 125.90102 * 180.14550 * 21 20 19 36 36 H 1.08999 * 109.47151 * 89.99969 * 24 23 19 37 37 H 1.09003 * 109.47673 * 209.99870 * 24 23 19 38 38 H 1.09001 * 109.47678 * 330.00177 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6039 1.9820 -0.8408 5 6 3.5417 1.4443 -0.1264 6 1 4.1517 1.8081 0.6871 7 6 4.1370 0.9814 -1.2808 8 7 3.4020 0.7147 -2.3382 9 14 5.9874 0.7334 -1.3427 10 1 6.3255 -0.6070 -0.8002 11 1 6.4529 0.8298 -2.7495 12 1 6.6547 1.7800 -0.5277 13 8 1.6580 2.0910 1.2416 14 6 0.4750 2.7247 1.2593 15 8 -0.2184 2.7376 0.2698 16 6 0.0119 3.4212 2.5128 17 1 0.7293 4.1954 2.7847 18 6 -0.0966 2.4043 3.6509 19 6 -1.3363 4.0494 2.2697 20 6 -2.3192 3.5502 1.4851 21 6 -3.4008 4.4356 1.5347 22 7 -3.0760 5.4344 2.3147 23 7 -1.7772 5.2135 2.7909 24 6 -1.0296 6.0912 3.6947 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8207 0.3894 -3.1504 31 1 0.8786 1.9503 3.8266 32 1 -0.4320 2.9080 4.5575 33 1 -0.8142 1.6301 3.3791 34 1 -2.2768 2.6297 0.9218 35 1 -4.3406 4.3171 1.0157 36 1 -0.4619 6.8155 3.1106 37 1 -1.7254 6.6170 4.3485 38 1 -0.3452 5.4941 4.2974 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817731503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:07 Heat of formation + Delta-G solvation = -36.996023 kcal Electronic energy + Delta-G solvation = -20834.182384 eV Core-core repulsion = 17677.760004 eV Total energy + Delta-G solvation = -3156.422380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.45643 -41.18097 -37.72145 -35.61898 -35.17422 -33.90022 -33.37175 -30.14939 -29.22369 -27.57263 -26.10209 -25.07110 -23.04696 -22.16272 -21.50785 -20.39875 -18.74034 -18.51488 -17.62754 -17.16152 -17.01744 -16.43547 -16.13511 -15.50556 -14.87659 -14.75748 -14.69746 -14.37827 -14.07015 -13.62732 -13.43587 -13.34600 -13.20873 -13.17950 -13.07528 -12.99651 -12.76455 -12.52014 -12.30076 -12.13855 -11.76849 -11.64387 -11.40768 -11.06303 -10.79040 -10.53041 -10.24454 -9.43803 -8.28421 -6.41305 0.78067 1.37682 1.42219 1.44947 1.49629 1.56173 1.86667 2.15902 2.44730 3.03419 3.26170 3.70033 3.84198 4.00418 4.10078 4.36481 4.39034 4.40570 4.42721 4.56771 4.66420 4.68445 4.76521 4.82313 4.84805 4.90861 5.11343 5.19085 5.23886 5.26684 5.38920 5.54677 5.63904 5.73022 5.92655 6.04348 6.17581 6.64636 6.69772 7.03201 7.29774 8.80895 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030425 B = 0.004910 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.068442 B = 5701.829674 C = 6007.554422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.120 4.120 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.975 3.025 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.264 1.264 13 O -0.356 6.356 14 C 0.452 3.548 15 O -0.526 6.526 16 C -0.012 4.012 17 H 0.137 0.863 18 C -0.131 4.131 19 C 0.082 3.918 20 C -0.254 4.254 21 C 0.037 3.963 22 N -0.319 5.319 23 N -0.371 5.371 24 C 0.084 3.916 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.269 0.731 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.137 0.863 35 H 0.207 0.793 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 5.250 13.434 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.799 3.201 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.188 1.188 13 O -0.272 6.272 14 C 0.295 3.705 15 O -0.416 6.416 16 C -0.032 4.032 17 H 0.154 0.846 18 C -0.189 4.189 19 C -0.045 4.045 20 C -0.284 4.284 21 C -0.147 4.147 22 N -0.141 5.141 23 N -0.155 5.155 24 C -0.056 4.056 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.224 0.776 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.503 6.385 13.544 16.748 hybrid contribution 0.951 -0.911 -1.331 1.873 sum -6.552 5.474 12.213 14.901 Atomic orbital electron populations 1.21721 0.95925 1.00726 1.00425 1.21754 0.94821 0.97872 1.01381 1.20355 0.94490 0.89219 0.78749 0.97274 1.21298 0.90542 1.44655 1.02248 0.91384 1.25781 1.03869 0.94396 0.93980 1.70109 1.38084 1.44398 1.02793 0.85310 0.78123 0.79304 0.77400 1.19099 1.20752 1.18849 1.86426 1.35417 1.62979 1.42372 1.23629 0.79921 0.76653 0.90286 1.90641 1.55275 1.58551 1.37088 1.19434 0.92172 0.99307 0.92330 0.84568 1.21762 1.04224 0.97349 0.95527 1.20381 0.95952 0.89243 0.98969 1.21493 0.94439 1.05114 1.07316 1.24238 1.00707 0.91837 0.97918 1.77238 0.95100 1.23920 1.17869 1.48692 1.11802 1.16742 1.38278 1.22281 0.96518 0.94249 0.92511 0.91969 0.93753 0.94717 0.91826 0.92600 0.92174 0.89642 0.88408 0.92343 0.84480 0.77640 0.90037 0.87797 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.57 71.98 0.62 -4.84 16 2 C -0.12 -5.77 5.54 30.59 0.17 -5.60 16 3 C 0.23 11.86 2.11 29.85 0.06 11.92 16 4 H 0.01 0.57 7.10 -2.38 -0.02 0.55 16 5 C -0.55 -30.41 8.82 25.60 0.23 -30.18 16 6 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 7 C 0.02 1.09 5.16 84.66 0.44 1.52 16 8 N -0.92 -52.69 12.16 21.45 0.26 -52.43 16 9 Si 0.98 42.20 29.55 68.60 2.03 44.23 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 O -0.36 -16.00 9.71 -51.37 -0.50 -16.50 16 14 C 0.45 17.85 5.64 71.24 0.40 18.25 16 15 O -0.53 -23.91 10.87 21.96 0.24 -23.67 16 16 C -0.01 -0.32 2.84 -12.28 -0.03 -0.35 16 17 H 0.14 3.02 7.49 -2.39 -0.02 3.00 16 18 C -0.13 -2.80 9.11 71.98 0.66 -2.14 16 19 C 0.08 2.41 5.74 41.41 0.24 2.65 16 20 C -0.25 -8.20 9.14 21.99 0.20 -7.99 16 21 C 0.04 1.06 12.03 85.24 1.02 2.08 16 22 N -0.32 -9.36 12.58 -57.02 -0.72 -10.08 16 23 N -0.37 -9.66 4.01 -356.04 -1.43 -11.09 16 24 C 0.08 1.29 11.06 127.77 1.41 2.71 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.04 1.75 6.06 -2.38 -0.01 1.73 16 27 H 0.03 1.57 7.80 -2.38 -0.02 1.55 16 28 H 0.06 3.36 6.80 -2.39 -0.02 3.35 16 29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.08 1.81 8.11 -2.39 -0.02 1.79 16 32 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.14 4.86 6.79 -2.91 -0.02 4.84 16 35 H 0.21 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.11 7.55 -2.39 -0.02 1.09 16 Total: -1.00 -70.18 316.70 6.34 -63.84 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 1.05 Total: 17.68 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.41 Total: -11.98 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.88 Total: -73.60 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.26 Total: -40.16 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -70.18 6.34 -63.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817731503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.845 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds