Wall clock time and date at job start Mon Mar 30 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47381 * 299.99866 * 16 14 13 18 18 C 1.52998 * 109.46940 * 60.00230 * 16 14 13 19 19 C 1.50702 * 109.46995 * 179.97438 * 16 14 13 20 20 C 1.35320 * 126.12296 * 325.02698 * 19 16 14 21 21 C 1.39871 * 107.91833 * 179.97438 * 20 19 16 22 22 N 1.30840 * 108.20156 * 359.97438 * 21 20 19 23 23 N 1.34946 * 126.13008 * 144.71711 * 19 16 14 24 24 C 1.46503 * 126.03493 * 0.03093 * 23 19 16 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47473 * 60.00171 * 18 16 14 32 32 H 1.09007 * 109.46814 * 179.97438 * 18 16 14 33 33 H 1.09004 * 109.47075 * 299.99139 * 18 16 14 34 34 H 1.07996 * 126.04222 * 359.93740 * 20 19 16 35 35 H 1.08002 * 125.89928 * 179.97438 * 21 20 19 36 36 H 1.08999 * 109.46843 * 90.00214 * 24 23 19 37 37 H 1.08998 * 109.46913 * 210.00229 * 24 23 19 38 38 H 1.08998 * 109.47126 * 330.00342 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 1 0.7244 4.1970 -2.7808 18 6 -0.1030 2.4064 -3.6466 19 6 -1.3408 4.0497 -2.2628 20 6 -2.3244 3.5463 -1.4815 21 6 -3.4050 4.4333 -1.5250 22 7 -3.0816 5.4335 -2.3041 23 7 -1.7814 5.2164 -2.7781 24 6 -1.0331 6.0988 -3.6769 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 -0.8201 1.6320 -3.3741 32 1 -0.4400 2.9106 -4.5524 33 1 0.8720 1.9525 -3.8243 34 1 -2.2826 2.6226 -0.9234 35 1 -4.3441 4.3133 -1.0054 36 1 -1.2294 5.8153 -4.7109 37 1 -1.3466 7.1305 -3.5172 38 1 0.0333 6.0072 -3.4712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817731504.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:11 Heat of formation + Delta-G solvation = -16.660865 kcal Electronic energy + Delta-G solvation = -20840.610374 eV Core-core repulsion = 17685.069793 eV Total energy + Delta-G solvation = -3155.540581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27989 -39.57604 -35.98348 -34.23343 -33.45339 -32.88382 -31.34857 -28.98956 -27.28914 -26.67555 -24.79993 -23.23875 -21.52463 -20.96011 -19.77853 -19.04307 -17.07831 -16.84319 -16.23280 -15.55231 -15.51579 -15.05463 -14.57045 -14.38527 -13.64133 -13.26626 -13.07251 -12.89437 -12.83444 -12.60345 -12.35440 -12.09342 -11.77829 -11.50732 -11.39039 -11.18045 -11.13666 -10.96596 -10.70345 -10.51355 -10.27871 -9.79394 -9.54543 -9.37594 -9.16419 -8.82599 -8.47756 -8.28333 -6.20761 -4.28000 1.92873 2.51765 2.94503 3.04142 3.22594 3.28487 3.31837 3.64584 4.30790 4.42117 4.59197 4.94649 5.05079 5.11126 5.14162 5.23054 5.32254 5.48624 5.74433 5.77154 5.87488 6.02444 6.14481 6.22477 6.29486 6.41269 6.46257 6.83569 6.87173 6.94682 7.08170 7.15360 7.25545 7.59654 7.71965 7.81359 7.92994 8.13587 8.60617 8.86219 9.37373 10.85941 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030342 B = 0.004920 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.589234 B = 5689.481262 C = 6030.198419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.459 3.541 15 O -0.499 6.499 16 C -0.023 4.023 17 H 0.109 0.891 18 C -0.136 4.136 19 C 0.086 3.914 20 C -0.227 4.227 21 C 0.040 3.960 22 N -0.302 5.302 23 N -0.375 5.375 24 C 0.099 3.901 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.108 0.892 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.182 0.818 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 5.620 -10.838 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.300 3.700 15 O -0.388 6.388 16 C -0.044 4.044 17 H 0.127 0.873 18 C -0.193 4.193 19 C -0.040 4.040 20 C -0.256 4.256 21 C -0.145 4.145 22 N -0.123 5.123 23 N -0.158 5.158 24 C -0.042 4.042 25 H 0.072 0.928 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.173 0.827 35 H 0.199 0.801 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.939 6.696 -10.932 15.079 hybrid contribution 1.170 -0.735 0.683 1.541 sum -6.769 5.961 -10.249 13.653 Atomic orbital electron populations 1.21867 0.98315 0.99038 1.00802 1.22011 0.92692 0.99280 1.03347 1.20698 0.94971 0.88784 0.78537 0.93487 1.21032 0.89673 1.39054 1.06269 0.91372 1.24874 0.99190 0.94740 0.95076 1.69888 1.35388 1.37765 1.09424 0.86298 0.83934 0.77711 0.78344 1.20435 1.20932 1.19600 1.86451 1.33742 1.62374 1.44258 1.22593 0.81240 0.77382 0.88758 1.90634 1.54988 1.57789 1.35361 1.19369 0.92009 0.98520 0.94508 0.87301 1.21723 1.04116 0.97980 0.95529 1.20341 0.96083 0.88595 0.98991 1.21470 0.93068 1.04765 1.06295 1.23847 1.00063 0.92626 0.98003 1.77287 0.94020 1.23768 1.17251 1.48353 1.12033 1.16807 1.38653 1.21826 0.95597 0.94449 0.92370 0.92770 0.94838 0.94845 0.87377 0.93981 0.92367 0.91491 0.91763 0.89926 0.82681 0.80126 0.90852 0.89371 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.16 0.32 -2.69 16 2 C -0.14 -3.25 5.49 -26.73 -0.15 -3.40 16 3 C 0.22 5.72 2.25 -27.88 -0.06 5.65 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.24 8.90 -34.44 -0.31 -14.54 16 6 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.64 11.29 55.43 0.63 -24.01 16 9 Si 0.91 20.66 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 O -0.35 -7.90 9.71 -39.25 -0.38 -8.28 16 14 C 0.46 9.05 5.64 36.01 0.20 9.26 16 15 O -0.50 -10.98 10.88 -18.74 -0.20 -11.19 16 16 C -0.02 -0.34 3.03 -92.92 -0.28 -0.62 16 17 H 0.11 1.36 6.94 -51.93 -0.36 1.00 16 18 C -0.14 -1.66 9.11 37.16 0.34 -1.32 16 19 C 0.09 1.32 5.73 -82.26 -0.47 0.85 16 20 C -0.23 -3.66 9.14 -40.01 -0.37 -4.03 16 21 C 0.04 0.58 12.03 -17.36 -0.21 0.37 16 22 N -0.30 -4.63 12.58 30.63 0.39 -4.24 16 23 N -0.37 -5.26 4.01 -63.88 -0.26 -5.52 16 24 C 0.10 0.92 11.27 59.85 0.67 1.59 16 25 H 0.05 1.20 7.80 -51.93 -0.40 0.80 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 28 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.01 8.11 -51.93 -0.42 0.58 16 34 H 0.16 2.65 6.81 -52.49 -0.36 2.29 16 35 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.66 6.97 -51.93 -0.36 0.30 16 LS Contribution 314.59 15.07 4.74 4.74 Total: -1.00 -31.37 314.59 -5.92 -37.29 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.41 Total: 2.84 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.40 Total: -7.27 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.75 Total: -33.77 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.59 Total: -19.46 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.37 -5.92 -37.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817731504.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.625 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds