Wall clock time and date at job start Mon Mar 30 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 O 1.45203 * 109.47162 * 295.00626 * 3 2 1 14 14 C 1.34228 * 117.00100 * 89.99663 * 13 3 2 15 15 O 1.20817 * 119.99998 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99508 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47381 * 299.99866 * 16 14 13 18 18 C 1.52998 * 109.46940 * 60.00230 * 16 14 13 19 19 C 1.50702 * 109.46995 * 179.97438 * 16 14 13 20 20 C 1.35320 * 126.12296 * 325.02698 * 19 16 14 21 21 C 1.39871 * 107.91833 * 179.97438 * 20 19 16 22 22 N 1.30840 * 108.20156 * 359.97438 * 21 20 19 23 23 N 1.34946 * 126.13008 * 144.71711 * 19 16 14 24 24 C 1.46503 * 126.03493 * 0.03093 * 23 19 16 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.47473 * 60.00171 * 18 16 14 32 32 H 1.09007 * 109.46814 * 179.97438 * 18 16 14 33 33 H 1.09004 * 109.47075 * 299.99139 * 18 16 14 34 34 H 1.07996 * 126.04222 * 359.93740 * 20 19 16 35 35 H 1.08002 * 125.89928 * 179.97438 * 21 20 19 36 36 H 1.08999 * 109.46843 * 90.00214 * 24 23 19 37 37 H 1.08998 * 109.46913 * 210.00229 * 24 23 19 38 38 H 1.08998 * 109.47126 * 330.00342 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2558 15 8 -0.2192 2.7369 -0.2654 16 6 0.0074 3.4227 -2.5083 17 1 0.7244 4.1970 -2.7808 18 6 -0.1030 2.4064 -3.6466 19 6 -1.3408 4.0497 -2.2628 20 6 -2.3244 3.5463 -1.4815 21 6 -3.4050 4.4333 -1.5250 22 7 -3.0816 5.4335 -2.3041 23 7 -1.7814 5.2164 -2.7781 24 6 -1.0331 6.0988 -3.6769 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 -0.8201 1.6320 -3.3741 32 1 -0.4400 2.9106 -4.5524 33 1 0.8720 1.9525 -3.8243 34 1 -2.2826 2.6226 -0.9234 35 1 -4.3441 4.3133 -1.0054 36 1 -1.2294 5.8153 -4.7109 37 1 -1.3466 7.1305 -3.5172 38 1 0.0333 6.0072 -3.4712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817731504.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:11 Heat of formation + Delta-G solvation = -35.117865 kcal Electronic energy + Delta-G solvation = -20841.410730 eV Core-core repulsion = 17685.069793 eV Total energy + Delta-G solvation = -3156.340937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.45906 -41.18463 -37.72964 -35.64099 -35.20023 -33.90590 -33.26985 -30.14995 -29.22655 -27.57188 -26.11134 -25.08570 -23.02953 -22.15655 -21.48325 -20.38881 -18.74622 -18.52302 -17.64661 -17.16514 -16.99199 -16.43868 -16.17676 -15.51168 -14.86503 -14.74722 -14.69267 -14.35457 -14.06244 -13.60796 -13.41000 -13.31984 -13.22776 -13.18149 -13.05136 -13.00470 -12.76603 -12.54614 -12.28915 -12.12329 -11.73001 -11.64710 -11.39128 -11.07505 -10.78302 -10.50313 -10.25011 -9.43270 -8.25439 -6.41926 0.78487 1.36961 1.42362 1.44592 1.49599 1.57075 1.86145 2.15744 2.44908 3.04656 3.25888 3.69754 3.82292 4.01054 4.08085 4.35238 4.41512 4.43995 4.45150 4.59243 4.66306 4.68452 4.75835 4.83478 4.84972 4.90064 5.13388 5.18603 5.25866 5.26535 5.43205 5.54074 5.70729 5.73004 6.00674 6.05058 6.17645 6.63532 6.69614 7.02754 7.29995 8.81139 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.030342 B = 0.004920 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.589234 B = 5689.481262 C = 6030.198419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.978 3.022 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.261 1.261 13 O -0.356 6.356 14 C 0.452 3.548 15 O -0.526 6.526 16 C -0.011 4.011 17 H 0.138 0.862 18 C -0.131 4.131 19 C 0.083 3.917 20 C -0.255 4.255 21 C 0.037 3.963 22 N -0.319 5.319 23 N -0.371 5.371 24 C 0.085 3.915 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.269 0.731 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.207 0.793 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.882 6.268 -12.755 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.802 3.198 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.185 1.185 13 O -0.272 6.272 14 C 0.295 3.705 15 O -0.415 6.415 16 C -0.032 4.032 17 H 0.155 0.845 18 C -0.188 4.188 19 C -0.045 4.045 20 C -0.284 4.284 21 C -0.147 4.147 22 N -0.141 5.141 23 N -0.155 5.155 24 C -0.055 4.055 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.224 0.776 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.358 7.366 -12.879 16.561 hybrid contribution 0.928 -0.873 1.273 1.801 sum -6.430 6.493 -11.607 14.772 Atomic orbital electron populations 1.21710 0.96209 1.00505 1.00222 1.21850 0.94500 0.98047 1.02290 1.20352 0.94392 0.89275 0.78586 0.97699 1.21342 0.90597 1.39793 1.06836 0.91438 1.25769 1.04013 0.93959 0.94453 1.70019 1.37376 1.38033 1.09842 0.85249 0.77997 0.77863 0.78724 1.20000 1.20246 1.18545 1.86433 1.35436 1.62950 1.42423 1.23634 0.79921 0.76660 0.90288 1.90634 1.55335 1.58574 1.36998 1.19441 0.92192 0.99293 0.92284 0.84490 1.21748 1.04147 0.97338 0.95583 1.20369 0.95960 0.89173 0.99030 1.21484 0.94500 1.04972 1.07441 1.24236 1.00729 0.91883 0.97828 1.77245 0.95000 1.24092 1.17777 1.48696 1.11723 1.16561 1.38491 1.22276 0.96107 0.94265 0.92828 0.94704 0.92242 0.94028 0.89835 0.93410 0.92137 0.92424 0.88459 0.89731 0.84539 0.77633 0.88356 0.88441 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.56 71.98 0.62 -4.89 16 2 C -0.13 -6.32 5.49 30.59 0.17 -6.15 16 3 C 0.23 12.01 2.25 29.85 0.07 12.08 16 4 H 0.01 0.31 7.16 -2.38 -0.02 0.30 16 5 C -0.55 -30.31 8.90 25.60 0.23 -30.08 16 6 H 0.07 3.64 7.81 -2.91 -0.02 3.61 16 7 C 0.02 0.97 5.29 84.66 0.45 1.41 16 8 N -0.91 -51.82 11.29 21.45 0.24 -51.58 16 9 Si 0.98 42.14 29.54 68.60 2.03 44.16 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 13 O -0.36 -16.09 9.71 -51.40 -0.50 -16.59 16 14 C 0.45 17.85 5.64 71.24 0.40 18.25 16 15 O -0.53 -23.82 10.88 21.99 0.24 -23.58 16 16 C -0.01 -0.31 3.03 -12.29 -0.04 -0.35 16 17 H 0.14 3.01 6.94 -2.39 -0.02 2.99 16 18 C -0.13 -2.85 9.11 71.98 0.66 -2.20 16 19 C 0.08 2.42 5.73 41.41 0.24 2.65 16 20 C -0.25 -8.20 9.14 21.99 0.20 -8.00 16 21 C 0.04 1.06 12.03 85.24 1.03 2.09 16 22 N -0.32 -9.32 12.58 -57.02 -0.72 -10.04 16 23 N -0.37 -9.62 4.01 -356.03 -1.43 -11.04 16 24 C 0.08 1.29 11.27 127.77 1.44 2.73 16 25 H 0.03 1.59 7.80 -2.39 -0.02 1.57 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.04 1.67 6.06 -2.38 -0.01 1.66 16 28 H 0.08 4.53 5.95 -2.39 -0.01 4.52 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 1.85 8.11 -2.38 -0.02 1.83 16 34 H 0.14 4.85 6.81 -2.91 -0.02 4.83 16 35 H 0.21 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.21 6.97 -2.39 -0.02 1.20 16 Total: -1.00 -69.33 314.59 6.36 -62.97 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.05 Total: 18.16 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.45 Total: -12.46 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.90 Total: -72.66 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -0.26 Total: -40.17 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.33 6.36 -62.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817731504.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.852 kcal (2) G-P(sol) polarization free energy of solvation -69.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds