Wall clock time and date at job start Mon Mar 30 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99846 * 2 1 4 4 N 1.46500 * 109.47284 * 125.48606 * 3 2 1 5 5 C 1.46499 * 119.99885 * 265.03654 * 4 3 2 6 6 C 1.50697 * 109.47553 * 277.58312 * 5 4 3 7 7 H 1.07998 * 119.99456 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00098 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00036 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99726 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47657 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46885 * 120.00132 * 10 8 6 13 13 H 1.48499 * 109.47451 * 240.00036 * 10 8 6 14 14 C 1.34770 * 119.99856 * 85.03615 * 4 3 2 15 15 O 1.21281 * 120.00444 * 6.55995 * 14 4 3 16 16 C 1.50703 * 120.00211 * 186.55541 * 14 4 3 17 17 C 1.53008 * 110.21426 * 290.78213 * 16 14 4 18 18 C 1.54472 * 110.25007 * 168.84924 * 16 14 4 19 19 C 1.54629 * 101.76584 * 266.33082 * 18 16 14 20 20 C 1.51277 * 104.19351 * 335.19973 * 19 18 16 21 21 O 1.21280 * 124.94343 * 196.25213 * 20 19 18 22 22 N 1.34425 * 110.11575 * 16.25376 * 20 19 18 23 23 H 1.08003 * 119.99626 * 180.02562 * 1 2 3 24 24 H 1.07994 * 119.99966 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00292 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.46896 * 5.48461 * 3 2 1 27 27 H 1.09001 * 109.47118 * 245.48663 * 3 2 1 28 28 H 1.09000 * 109.46900 * 37.58908 * 5 4 3 29 29 H 1.09005 * 109.47011 * 157.58203 * 5 4 3 30 30 H 0.97004 * 120.00205 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46562 * 293.66393 * 17 16 14 32 32 H 1.08997 * 109.47336 * 53.65803 * 17 16 14 33 33 H 1.08999 * 109.46853 * 173.66467 * 17 16 14 34 34 H 1.09000 * 110.96915 * 24.44877 * 18 16 14 35 35 H 1.08996 * 110.97548 * 148.20662 * 18 16 14 36 36 H 1.08991 * 110.48866 * 93.87869 * 19 18 16 37 37 H 1.08997 * 110.48559 * 216.52379 * 19 18 16 38 38 H 0.96998 * 124.34880 * 180.42870 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0021 1.3272 1.1247 5 6 2.6133 1.9530 2.3909 6 6 2.8248 3.4424 2.3010 7 1 3.2098 3.8791 1.3913 8 6 2.5257 4.2475 3.3795 9 7 2.0564 3.7157 4.4869 10 14 2.7885 6.0936 3.2682 11 1 3.3219 6.4377 1.9257 12 1 1.4948 6.7913 3.4800 13 1 3.7570 6.5195 4.3101 14 6 4.2230 0.7717 0.9943 15 8 4.5900 0.3603 -0.0859 16 6 5.1326 0.6619 2.1909 17 6 5.6144 2.0499 2.6180 18 6 6.3390 -0.2456 1.8640 19 6 5.8437 -1.6217 2.3661 20 6 4.8122 -1.2829 3.4194 21 8 4.3864 -2.0579 4.2494 22 7 4.4360 0.0023 3.3016 23 1 -0.5400 -0.9354 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3592 2.1312 0.0982 27 1 2.6144 1.4066 -0.9350 28 1 1.5618 1.7466 2.5904 29 1 3.2227 1.5477 3.1987 30 1 1.8463 4.2821 5.2459 31 1 6.2542 2.4674 1.8405 32 1 4.7545 2.7022 2.7698 33 1 6.1777 1.9688 3.5475 34 1 6.5310 -0.2679 0.7912 35 1 7.2264 0.0729 2.4109 36 1 5.3867 -2.1832 1.5513 37 1 6.6662 -2.1862 2.8053 38 1 3.7878 0.4377 3.8769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823090711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:44 Heat of formation + Delta-G solvation = -38.924842 kcal Electronic energy + Delta-G solvation = -21534.252308 eV Core-core repulsion = 18377.746288 eV Total energy + Delta-G solvation = -3156.506020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84869 -38.61495 -36.17336 -35.67697 -33.63510 -32.34763 -30.94143 -30.33801 -27.68770 -26.01985 -24.33692 -23.34578 -21.70248 -20.41042 -19.76131 -18.80214 -17.06407 -16.57787 -16.31864 -15.80200 -15.19211 -14.88571 -14.59838 -14.10007 -13.94690 -13.51747 -13.18190 -12.98845 -12.69849 -12.47209 -12.36481 -12.06653 -11.78311 -11.67557 -11.34201 -11.10020 -10.96606 -10.89544 -10.87355 -10.47220 -10.25242 -9.93050 -9.75115 -9.48498 -9.14145 -8.76276 -8.45506 -7.89922 -6.35489 -4.42849 2.49154 2.88019 3.01220 3.11866 3.22100 3.25169 3.76972 3.89768 4.19642 4.58174 4.73910 4.96071 4.97540 5.17381 5.33599 5.37126 5.50337 5.63901 5.80755 5.88721 6.04786 6.08338 6.12482 6.25706 6.27915 6.30590 6.51025 6.84551 6.88083 6.99020 7.03060 7.22994 7.33232 7.41917 7.59179 7.85390 8.15748 8.56400 8.59933 8.78295 9.23905 10.70254 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.008315 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.397297 B = 3366.508277 C = 4133.796032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.143 3.857 4 N -0.583 5.583 5 C 0.226 3.774 6 C -0.541 4.541 7 H 0.066 0.934 8 C 0.068 3.932 9 N -0.883 5.883 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.515 3.485 15 O -0.564 6.564 16 C 0.150 3.850 17 C -0.184 4.184 18 C -0.116 4.116 19 C -0.157 4.157 20 C 0.516 3.484 21 O -0.544 6.544 22 N -0.709 5.709 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -3.950 -4.920 7.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C 0.021 3.979 4 N -0.312 5.312 5 C 0.106 3.894 6 C -0.579 4.579 7 H 0.084 0.916 8 C -0.137 4.137 9 N -0.520 5.520 10 Si 0.724 3.276 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.207 1.207 14 C 0.300 3.700 15 O -0.443 6.443 16 C 0.060 3.940 17 C -0.241 4.241 18 C -0.154 4.154 19 C -0.197 4.197 20 C 0.303 3.697 21 O -0.422 6.422 22 N -0.371 5.371 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.256 -4.544 -4.899 7.922 hybrid contribution -0.343 1.299 0.361 1.391 sum 3.913 -3.246 -4.537 6.814 Atomic orbital electron populations 1.23778 0.95754 1.01614 1.01623 1.23362 0.96121 0.99220 0.98938 1.20435 0.92073 0.94889 0.90547 1.48131 1.12866 1.54616 1.15563 1.19827 0.97190 0.92797 0.79566 1.21447 1.44780 0.91461 1.00230 0.91593 1.24966 0.94419 0.99224 0.95084 1.69913 1.42494 1.36104 1.03539 0.86455 0.78139 0.84625 0.78431 1.19497 1.20760 1.20664 1.20614 0.82403 0.77425 0.89536 1.90586 1.74690 1.51006 1.28056 1.21033 0.91502 0.96149 0.85317 1.22648 1.05657 0.94703 1.01112 1.22636 0.95991 0.92410 1.04345 1.22370 0.99241 0.99123 0.98943 1.20972 0.82261 0.82159 0.84341 1.90713 1.59746 1.52611 1.39123 1.47049 1.44914 1.12024 1.33146 0.88868 0.88370 0.87978 0.89459 0.90173 0.94619 0.93434 0.92225 0.91589 0.85558 0.91904 0.87618 0.89557 0.88018 0.88256 0.73090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 14.32 29.01 0.42 -2.33 16 2 C -0.16 -2.58 9.81 -36.03 -0.35 -2.93 16 3 C 0.14 2.57 5.86 -5.19 -0.03 2.54 16 4 N -0.58 -11.51 2.46 -176.43 -0.43 -11.94 16 5 C 0.23 4.93 4.47 -5.20 -0.02 4.91 16 6 C -0.54 -12.70 6.96 -34.44 -0.24 -12.94 16 7 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.88 -22.53 13.29 55.43 0.74 -21.79 16 10 Si 0.90 19.15 29.54 -169.99 -5.02 14.13 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 C 0.51 9.91 6.67 -10.99 -0.07 9.84 16 15 O -0.56 -11.52 15.07 5.56 0.08 -11.44 16 16 C 0.15 2.53 0.72 -132.05 -0.09 2.44 16 17 C -0.18 -3.08 8.45 37.16 0.31 -2.77 16 18 C -0.12 -1.60 6.08 -25.10 -0.15 -1.75 16 19 C -0.16 -2.19 6.85 -26.74 -0.18 -2.38 16 20 C 0.52 9.23 8.43 -10.86 -0.09 9.14 16 21 O -0.54 -11.52 18.03 5.56 0.10 -11.42 16 22 N -0.71 -12.61 4.83 -47.68 -0.23 -12.84 16 23 H 0.09 1.19 8.06 -52.48 -0.42 0.76 16 24 H 0.10 1.35 7.84 -52.49 -0.41 0.94 16 25 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.09 1.55 7.69 -51.93 -0.40 1.15 16 27 H 0.08 1.43 7.49 -51.93 -0.39 1.04 16 28 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.05 1.04 2.89 -51.93 -0.15 0.89 16 30 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.13 2.52 3.77 -51.93 -0.20 2.33 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.11 1.49 6.84 -51.93 -0.36 1.13 16 35 H 0.09 1.00 7.91 -51.93 -0.41 0.59 16 36 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.42 8.07 6.35 -40.82 -0.26 7.81 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -27.59 312.32 -5.74 -33.33 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.07 Total: 11.97 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.61 Total: 5.30 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.07 Total: -46.58 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.18 Total: -22.86 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.59 -5.74 -33.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.595 kcal (2) G-P(sol) polarization free energy of solvation -27.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds