Wall clock time and date at job start Mon Mar 30 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99846 * 2 1 4 4 N 1.46500 * 109.47284 * 125.48606 * 3 2 1 5 5 C 1.46499 * 119.99885 * 265.03654 * 4 3 2 6 6 C 1.50697 * 109.47553 * 277.58312 * 5 4 3 7 7 H 1.07998 * 119.99456 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00098 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00036 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99726 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47657 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46885 * 120.00132 * 10 8 6 13 13 H 1.48499 * 109.47451 * 240.00036 * 10 8 6 14 14 C 1.34770 * 119.99856 * 85.03615 * 4 3 2 15 15 O 1.21281 * 120.00444 * 6.55995 * 14 4 3 16 16 C 1.50703 * 120.00211 * 186.55541 * 14 4 3 17 17 C 1.53008 * 110.21426 * 290.78213 * 16 14 4 18 18 C 1.54472 * 110.25007 * 168.84924 * 16 14 4 19 19 C 1.54629 * 101.76584 * 266.33082 * 18 16 14 20 20 C 1.51277 * 104.19351 * 335.19973 * 19 18 16 21 21 O 1.21280 * 124.94343 * 196.25213 * 20 19 18 22 22 N 1.34425 * 110.11575 * 16.25376 * 20 19 18 23 23 H 1.08003 * 119.99626 * 180.02562 * 1 2 3 24 24 H 1.07994 * 119.99966 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00292 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.46896 * 5.48461 * 3 2 1 27 27 H 1.09001 * 109.47118 * 245.48663 * 3 2 1 28 28 H 1.09000 * 109.46900 * 37.58908 * 5 4 3 29 29 H 1.09005 * 109.47011 * 157.58203 * 5 4 3 30 30 H 0.97004 * 120.00205 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.46562 * 293.66393 * 17 16 14 32 32 H 1.08997 * 109.47336 * 53.65803 * 17 16 14 33 33 H 1.08999 * 109.46853 * 173.66467 * 17 16 14 34 34 H 1.09000 * 110.96915 * 24.44877 * 18 16 14 35 35 H 1.08996 * 110.97548 * 148.20662 * 18 16 14 36 36 H 1.08991 * 110.48866 * 93.87869 * 19 18 16 37 37 H 1.08997 * 110.48559 * 216.52379 * 19 18 16 38 38 H 0.96998 * 124.34880 * 180.42870 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0021 1.3272 1.1247 5 6 2.6133 1.9530 2.3909 6 6 2.8248 3.4424 2.3010 7 1 3.2098 3.8791 1.3913 8 6 2.5257 4.2475 3.3795 9 7 2.0564 3.7157 4.4869 10 14 2.7885 6.0936 3.2682 11 1 3.3219 6.4377 1.9257 12 1 1.4948 6.7913 3.4800 13 1 3.7570 6.5195 4.3101 14 6 4.2230 0.7717 0.9943 15 8 4.5900 0.3603 -0.0859 16 6 5.1326 0.6619 2.1909 17 6 5.6144 2.0499 2.6180 18 6 6.3390 -0.2456 1.8640 19 6 5.8437 -1.6217 2.3661 20 6 4.8122 -1.2829 3.4194 21 8 4.3864 -2.0579 4.2494 22 7 4.4360 0.0023 3.3016 23 1 -0.5400 -0.9354 0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3592 2.1312 0.0982 27 1 2.6144 1.4066 -0.9350 28 1 1.5618 1.7466 2.5904 29 1 3.2227 1.5477 3.1987 30 1 1.8463 4.2821 5.2459 31 1 6.2542 2.4674 1.8405 32 1 4.7545 2.7022 2.7698 33 1 6.1777 1.9688 3.5475 34 1 6.5310 -0.2679 0.7912 35 1 7.2264 0.0729 2.4109 36 1 5.3867 -2.1832 1.5513 37 1 6.6662 -2.1862 2.8053 38 1 3.7878 0.4377 3.8769 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823090711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:43 Heat of formation + Delta-G solvation = -56.121593 kcal Electronic energy + Delta-G solvation = -21534.998016 eV Core-core repulsion = 18377.746288 eV Total energy + Delta-G solvation = -3157.251727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.26455 -40.11267 -37.61494 -37.25188 -35.20179 -33.96775 -32.21308 -31.69308 -29.43120 -27.45687 -25.63347 -25.07966 -23.06107 -21.77861 -21.08363 -20.23995 -18.78285 -18.10272 -17.85792 -17.30097 -16.63335 -16.42814 -16.15968 -15.53309 -15.35703 -14.93681 -14.56124 -14.36673 -14.18322 -14.06121 -13.78820 -13.39937 -13.20790 -13.06394 -12.93408 -12.72008 -12.51588 -12.28352 -12.15659 -12.01218 -11.73995 -11.63043 -11.29861 -10.95042 -10.60350 -10.44058 -9.94345 -9.51903 -8.21619 -6.33578 1.21104 1.41131 1.44760 1.47998 1.53591 1.57300 2.29109 2.44147 2.47117 3.09398 3.31937 3.50962 3.59600 3.93360 4.03411 4.17193 4.20181 4.42944 4.50407 4.71166 4.77998 4.83226 4.86129 4.93882 4.97407 5.05981 5.09833 5.15991 5.54577 5.58441 5.62730 5.70412 5.75849 5.85630 5.98679 6.03056 6.53159 6.78164 7.12392 7.19882 7.37076 8.83456 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.015219 B = 0.008315 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.397297 B = 3366.508277 C = 4133.796032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.180 4.180 3 C 0.142 3.858 4 N -0.589 5.589 5 C 0.240 3.760 6 C -0.536 4.536 7 H 0.058 0.942 8 C 0.028 3.972 9 N -0.913 5.913 10 Si 0.952 3.048 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.278 1.278 14 C 0.509 3.491 15 O -0.576 6.576 16 C 0.147 3.853 17 C -0.179 4.179 18 C -0.105 4.105 19 C -0.146 4.146 20 C 0.510 3.490 21 O -0.583 6.583 22 N -0.711 5.711 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.009 0.991 29 H 0.052 0.948 30 H 0.268 0.732 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 -3.995 -5.542 8.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 C 0.019 3.981 4 N -0.317 5.317 5 C 0.119 3.881 6 C -0.574 4.574 7 H 0.077 0.923 8 C -0.173 4.173 9 N -0.552 5.552 10 Si 0.778 3.222 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.204 1.204 14 C 0.295 3.705 15 O -0.456 6.456 16 C 0.057 3.943 17 C -0.236 4.236 18 C -0.143 4.143 19 C -0.185 4.185 20 C 0.298 3.702 21 O -0.464 6.464 22 N -0.371 5.371 23 H 0.133 0.867 24 H 0.123 0.877 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.124 0.876 37 H 0.149 0.851 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.404 -4.582 -5.558 9.005 hybrid contribution -0.765 1.301 0.510 1.594 sum 4.639 -3.281 -5.048 7.601 Atomic orbital electron populations 1.24021 0.95078 1.03015 0.98367 1.23193 0.96774 0.98059 1.01941 1.20491 0.91932 0.95792 0.89858 1.48172 1.13647 1.54666 1.15261 1.19525 0.95596 0.92262 0.80706 1.21533 1.43930 0.92290 0.99688 0.92335 1.25560 0.94384 1.02531 0.94847 1.69999 1.43818 1.37247 1.04128 0.85594 0.77752 0.80538 0.78349 1.19230 1.21045 1.20367 1.21074 0.82332 0.76829 0.90216 1.90571 1.74851 1.51454 1.28772 1.21205 0.92013 0.97072 0.83985 1.22546 1.04669 0.93910 1.02503 1.22698 0.95446 0.91207 1.04933 1.22396 0.98829 0.99657 0.97641 1.21648 0.82491 0.81574 0.84466 1.90688 1.61291 1.53472 1.40947 1.47137 1.44627 1.12350 1.33009 0.86663 0.87665 0.88685 0.89817 0.90410 0.97252 0.93098 0.92280 0.90071 0.88745 0.90259 0.87382 0.86492 0.87633 0.85138 0.74378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 14.32 67.78 0.97 -3.63 16 2 C -0.18 -5.87 9.81 25.64 0.25 -5.62 16 3 C 0.14 5.11 5.86 85.63 0.50 5.61 16 4 N -0.59 -23.38 2.46 -830.51 -2.04 -25.43 16 5 C 0.24 10.65 4.47 85.63 0.38 11.03 16 6 C -0.54 -25.35 6.96 25.60 0.18 -25.17 16 7 H 0.06 2.82 7.81 -2.91 -0.02 2.79 16 8 C 0.03 1.37 5.46 84.66 0.46 1.83 16 9 N -0.91 -47.06 13.29 21.45 0.28 -46.78 16 10 Si 0.95 39.14 29.54 68.60 2.03 41.17 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 13 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 14 C 0.51 19.27 6.67 87.66 0.58 19.85 16 15 O -0.58 -22.97 15.07 -3.03 -0.05 -23.01 16 16 C 0.15 4.75 0.72 3.31 0.00 4.76 16 17 C -0.18 -5.72 8.45 71.98 0.61 -5.11 16 18 C -0.10 -2.58 6.08 31.65 0.19 -2.39 16 19 C -0.15 -3.68 6.85 30.59 0.21 -3.47 16 20 C 0.51 17.71 8.43 87.90 0.74 18.45 16 21 O -0.58 -24.59 18.03 -3.03 -0.05 -24.65 16 22 N -0.71 -24.97 4.83 -423.36 -2.04 -27.02 16 23 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 24 H 0.11 2.75 7.84 -2.91 -0.02 2.73 16 25 H 0.10 3.22 8.06 -2.91 -0.02 3.19 16 26 H 0.08 3.01 7.69 -2.39 -0.02 2.99 16 27 H 0.08 2.79 7.49 -2.39 -0.02 2.77 16 28 H 0.01 0.46 8.13 -2.39 -0.02 0.44 16 29 H 0.05 2.27 2.89 -2.38 -0.01 2.26 16 30 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 3.72 3.77 -2.39 -0.01 3.71 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.11 2.70 6.84 -2.39 -0.02 2.68 16 35 H 0.12 2.19 7.91 -2.39 -0.02 2.18 16 36 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.13 2.53 8.14 -2.39 -0.02 2.52 16 38 H 0.41 15.99 6.35 -92.71 -0.59 15.40 16 Total: -1.00 -59.04 312.32 3.69 -55.35 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.48 Total: 34.21 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 5.08 Total: 16.16 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -3.80 Total: -99.22 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.10 Total: -47.66 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -59.04 3.69 -55.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.773 kcal (2) G-P(sol) polarization free energy of solvation -59.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds