Wall clock time and date at job start Mon Mar 30 2020 04:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48496 * 109.47329 * 239.99957 * 3 2 1 5 5 H 1.48500 * 109.46938 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47160 * 119.99815 * 3 2 1 7 7 C 1.38811 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00573 * 158.11704 * 7 2 1 9 9 N 1.36938 * 120.00197 * 338.11647 * 7 2 1 10 10 C 1.46498 * 119.99863 * 324.74007 * 9 7 2 11 11 C 1.53002 * 109.46789 * 269.99618 * 10 9 7 12 12 H 1.08995 * 110.46531 * 303.82233 * 11 10 9 13 13 C 1.54096 * 110.84772 * 181.23242 * 11 10 9 14 14 N 1.47099 * 103.77098 * 241.57848 * 13 11 10 15 15 C 1.46507 * 125.55398 * 179.86959 * 14 13 11 16 16 C 1.52996 * 117.51562 * 171.00613 * 15 14 13 17 17 C 1.52995 * 117.49735 * 239.63580 * 15 14 13 18 18 C 1.33998 * 108.88713 * 359.61149 * 14 13 11 19 19 O 1.21500 * 123.07702 * 180.29583 * 18 14 13 20 20 O 1.33773 * 113.85330 * 0.26226 * 18 14 13 21 21 C 1.46502 * 120.00209 * 144.73238 * 9 7 2 22 22 C 1.52994 * 117.49959 * 3.24155 * 21 9 7 23 23 C 1.52998 * 117.49748 * 294.58148 * 21 9 7 24 24 H 0.96997 * 119.99631 * 355.75760 * 1 2 3 25 25 H 1.08991 * 109.47855 * 149.99735 * 10 9 7 26 26 H 1.08999 * 109.47607 * 29.99161 * 10 9 7 27 27 H 1.09001 * 110.67141 * 122.95734 * 13 11 10 28 28 H 1.08996 * 110.45946 * 0.09955 * 13 11 10 29 29 H 1.08999 * 115.54887 * 25.30432 * 15 14 13 30 30 H 1.08993 * 117.50123 * 214.97287 * 16 15 14 31 31 H 1.09002 * 117.49727 * 359.97438 * 16 15 14 32 32 H 1.09001 * 117.50187 * 359.97304 * 17 15 14 33 33 H 1.08997 * 117.49832 * 145.00335 * 17 15 14 34 34 H 1.08995 * 115.54892 * 148.91245 * 21 9 7 35 35 H 1.09003 * 117.49656 * 0.02562 * 22 21 9 36 36 H 1.08996 * 117.50079 * 145.01926 * 22 21 9 37 37 H 1.09006 * 117.49987 * 214.98034 * 23 21 9 38 38 H 1.09001 * 117.50391 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0320 -1.2357 -0.3491 9 7 1.3997 -2.3456 0.4410 10 6 0.4446 -2.2845 1.5501 11 6 1.1876 -2.4755 2.8739 12 1 1.7457 -3.4117 2.8660 13 6 0.2069 -2.4474 4.0622 14 7 0.6529 -1.2927 4.8570 15 6 0.0400 -0.8293 6.1044 16 6 0.7742 0.2580 6.8914 17 6 -0.5106 0.5978 6.1334 18 6 1.7146 -0.7373 4.2572 19 8 2.2935 0.2346 4.7004 20 8 2.0794 -1.3513 3.1260 21 6 1.7014 -3.6299 -0.1960 22 6 2.7628 -3.6400 -1.2978 23 6 1.2845 -3.8090 -1.6571 24 1 -0.4849 0.8377 0.0621 25 1 -0.2987 -3.0731 1.4336 26 1 -0.0520 -1.3142 1.5491 27 1 0.2821 -3.3654 4.6450 28 1 -0.8139 -2.2986 3.7103 29 1 -0.4969 -1.5876 6.6745 30 1 0.7205 0.2152 7.9792 31 1 1.7137 0.6285 6.4814 32 1 -0.4165 1.1921 5.2245 33 1 -1.4097 0.7785 6.7225 34 1 1.6430 -4.5025 0.4546 35 1 3.2370 -2.6910 -1.5485 36 1 3.4025 -4.5193 -1.3723 37 1 0.9522 -4.7995 -1.9680 38 1 0.7854 -2.9714 -2.1445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844289674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:14 Heat of formation + Delta-G solvation = 21.684716 kcal Electronic energy + Delta-G solvation = -21278.752096 eV Core-core repulsion = 18124.874304 eV Total energy + Delta-G solvation = -3153.877792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05313 -37.67253 -36.89342 -36.22671 -33.55495 -33.33390 -31.17354 -29.00119 -25.47294 -23.69720 -23.50898 -22.32836 -21.76892 -21.33949 -20.07884 -19.47168 -17.04232 -16.92172 -16.11877 -15.72089 -15.36376 -15.28821 -14.61251 -13.97086 -13.92641 -13.58507 -13.41399 -12.88365 -12.75071 -12.63220 -12.03322 -11.65873 -11.42484 -11.20845 -10.92778 -10.80159 -10.64132 -10.49876 -10.38579 -10.32839 -9.99524 -9.72260 -9.65042 -9.63792 -9.33247 -8.44151 -8.39839 -6.63436 -5.81359 -3.40015 2.80747 3.22416 3.44155 3.50048 3.62229 3.96647 4.08139 4.45307 4.65627 4.79750 4.89259 4.90271 5.02550 5.16238 5.30131 5.36541 5.50426 5.50911 5.76614 5.79368 5.85750 5.98092 6.07724 6.12802 6.21183 6.28751 6.40671 6.46576 6.56143 6.58122 6.86430 6.99275 7.18796 7.40371 7.81829 7.99266 8.43784 8.57601 9.10278 9.74750 10.25716 11.16717 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.007524 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.580444 B = 3720.597540 C = 4546.029086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.018 3.982 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.247 4.247 8 H 0.066 0.934 9 N -0.544 5.544 10 C 0.136 3.864 11 C 0.051 3.949 12 H 0.096 0.904 13 C 0.075 3.925 14 N -0.611 5.611 15 C 0.102 3.898 16 C -0.190 4.190 17 C -0.192 4.192 18 C 0.641 3.359 19 O -0.536 6.536 20 O -0.288 6.288 21 C 0.116 3.884 22 C -0.194 4.194 23 C -0.219 4.219 24 H 0.254 0.746 25 H 0.054 0.946 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.095 0.905 31 H 0.132 0.868 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -7.175 9.774 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.181 4.181 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.260 5.260 10 C 0.009 3.991 11 C -0.007 4.007 12 H 0.114 0.886 13 C -0.049 4.049 14 N -0.357 5.357 15 C -0.001 4.001 16 C -0.227 4.227 17 C -0.231 4.231 18 C 0.397 3.603 19 O -0.424 6.424 20 O -0.196 6.196 21 C 0.007 3.993 22 C -0.232 4.232 23 C -0.260 4.260 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.707 -6.475 9.742 12.007 hybrid contribution 0.209 0.714 -0.003 0.744 sum -2.498 -5.761 9.739 11.588 Atomic orbital electron populations 1.69983 1.05516 1.26215 1.51496 1.25003 0.94935 0.98683 0.99527 0.86548 0.79624 0.83220 0.78673 1.20751 1.21719 1.19981 1.18911 0.94181 0.85159 1.39371 0.91657 1.43271 1.48577 1.01919 1.32195 1.21385 0.90670 1.04774 0.82277 1.25072 0.89818 0.88134 0.97719 0.88640 1.22862 1.00722 0.89090 0.92217 1.47406 1.31816 1.31823 1.24700 1.21220 1.01688 0.91442 0.85790 1.23751 0.99466 1.01367 0.98157 1.23393 0.97637 0.98684 1.03372 1.18834 0.79530 0.82446 0.79521 1.90830 1.59299 1.26091 1.66168 1.87538 1.51720 1.43101 1.37225 1.21253 1.00920 0.89896 0.87216 1.23033 0.91918 1.01995 1.06254 1.23363 0.97452 1.00693 1.04508 0.93588 0.92798 0.87037 0.90078 0.89163 0.85183 0.88625 0.85035 0.88434 0.88293 0.89522 0.88370 0.90721 0.91196 0.88946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.33 55.49 0.63 -24.41 16 2 C 0.02 0.51 4.97 -17.43 -0.09 0.42 16 3 Si 0.89 22.88 29.61 -169.99 -5.03 17.84 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.25 -6.60 8.25 -15.06 -0.12 -6.72 16 8 H 0.07 1.79 6.56 -52.48 -0.34 1.44 16 9 N -0.54 -12.70 2.77 -165.67 -0.46 -13.16 16 10 C 0.14 2.85 4.93 -4.04 -0.02 2.83 16 11 C 0.05 0.92 4.09 -26.16 -0.11 0.81 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 C 0.08 1.05 7.35 -3.14 -0.02 1.03 16 14 N -0.61 -10.15 3.30 -171.22 -0.56 -10.71 16 15 C 0.10 1.36 6.95 -67.93 -0.47 0.89 16 16 C -0.19 -2.62 9.78 -26.73 -0.26 -2.88 16 17 C -0.19 -2.59 10.36 -26.73 -0.28 -2.87 16 18 C 0.64 13.76 8.74 53.71 0.47 14.23 16 19 O -0.54 -12.86 14.65 -19.11 -0.28 -13.14 16 20 O -0.29 -6.55 10.42 -37.84 -0.39 -6.94 16 21 C 0.12 2.32 6.56 -67.93 -0.45 1.87 16 22 C -0.19 -3.70 9.80 -26.70 -0.26 -3.96 16 23 C -0.22 -4.24 10.36 -26.70 -0.28 -4.52 16 24 H 0.25 7.06 8.32 -40.82 -0.34 6.72 16 25 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 26 H 0.11 2.76 5.36 -51.93 -0.28 2.48 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.18 7.74 -51.93 -0.40 0.78 16 29 H 0.13 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.13 2.30 5.34 -51.93 -0.28 2.03 16 32 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.10 2.09 6.37 -51.93 -0.33 1.76 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -31.91 314.72 -8.66 -40.58 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.41 Total: 4.07 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.89 Total: 1.13 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.40 Total: -48.28 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.67 Total: -20.08 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.91 -8.66 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844289674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.260 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds