Wall clock time and date at job start Mon Mar 30 2020 04:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48496 * 109.47329 * 239.99957 * 3 2 1 5 5 H 1.48500 * 109.46938 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47160 * 119.99815 * 3 2 1 7 7 C 1.38811 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00573 * 158.11704 * 7 2 1 9 9 N 1.36938 * 120.00197 * 338.11647 * 7 2 1 10 10 C 1.46498 * 119.99863 * 324.74007 * 9 7 2 11 11 C 1.53002 * 109.46789 * 269.99618 * 10 9 7 12 12 H 1.08995 * 110.46531 * 303.82233 * 11 10 9 13 13 C 1.54096 * 110.84772 * 181.23242 * 11 10 9 14 14 N 1.47099 * 103.77098 * 241.57848 * 13 11 10 15 15 C 1.46507 * 125.55398 * 179.86959 * 14 13 11 16 16 C 1.52996 * 117.51562 * 171.00613 * 15 14 13 17 17 C 1.52995 * 117.49735 * 239.63580 * 15 14 13 18 18 C 1.33998 * 108.88713 * 359.61149 * 14 13 11 19 19 O 1.21500 * 123.07702 * 180.29583 * 18 14 13 20 20 O 1.33773 * 113.85330 * 0.26226 * 18 14 13 21 21 C 1.46502 * 120.00209 * 144.73238 * 9 7 2 22 22 C 1.52994 * 117.49959 * 3.24155 * 21 9 7 23 23 C 1.52998 * 117.49748 * 294.58148 * 21 9 7 24 24 H 0.96997 * 119.99631 * 355.75760 * 1 2 3 25 25 H 1.08991 * 109.47855 * 149.99735 * 10 9 7 26 26 H 1.08999 * 109.47607 * 29.99161 * 10 9 7 27 27 H 1.09001 * 110.67141 * 122.95734 * 13 11 10 28 28 H 1.08996 * 110.45946 * 0.09955 * 13 11 10 29 29 H 1.08999 * 115.54887 * 25.30432 * 15 14 13 30 30 H 1.08993 * 117.50123 * 214.97287 * 16 15 14 31 31 H 1.09002 * 117.49727 * 359.97438 * 16 15 14 32 32 H 1.09001 * 117.50187 * 359.97304 * 17 15 14 33 33 H 1.08997 * 117.49832 * 145.00335 * 17 15 14 34 34 H 1.08995 * 115.54892 * 148.91245 * 21 9 7 35 35 H 1.09003 * 117.49656 * 0.02562 * 22 21 9 36 36 H 1.08996 * 117.50079 * 145.01926 * 22 21 9 37 37 H 1.09006 * 117.49987 * 214.98034 * 23 21 9 38 38 H 1.09001 * 117.50391 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0320 -1.2357 -0.3491 9 7 1.3997 -2.3456 0.4410 10 6 0.4446 -2.2845 1.5501 11 6 1.1876 -2.4755 2.8739 12 1 1.7457 -3.4117 2.8660 13 6 0.2069 -2.4474 4.0622 14 7 0.6529 -1.2927 4.8570 15 6 0.0400 -0.8293 6.1044 16 6 0.7742 0.2580 6.8914 17 6 -0.5106 0.5978 6.1334 18 6 1.7146 -0.7373 4.2572 19 8 2.2935 0.2346 4.7004 20 8 2.0794 -1.3513 3.1260 21 6 1.7014 -3.6299 -0.1960 22 6 2.7628 -3.6400 -1.2978 23 6 1.2845 -3.8090 -1.6571 24 1 -0.4849 0.8377 0.0621 25 1 -0.2987 -3.0731 1.4336 26 1 -0.0520 -1.3142 1.5491 27 1 0.2821 -3.3654 4.6450 28 1 -0.8139 -2.2986 3.7103 29 1 -0.4969 -1.5876 6.6745 30 1 0.7205 0.2152 7.9792 31 1 1.7137 0.6285 6.4814 32 1 -0.4165 1.1921 5.2245 33 1 -1.4097 0.7785 6.7225 34 1 1.6430 -4.5025 0.4546 35 1 3.2370 -2.6910 -1.5485 36 1 3.4025 -4.5193 -1.3723 37 1 0.9522 -4.7995 -1.9680 38 1 0.7854 -2.9714 -2.1445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844289674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:13 Heat of formation + Delta-G solvation = 1.407068 kcal Electronic energy + Delta-G solvation = -21279.631401 eV Core-core repulsion = 18124.874304 eV Total energy + Delta-G solvation = -3154.757097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.51475 -39.14856 -38.41196 -37.72288 -35.33332 -34.66698 -33.01630 -30.62138 -27.19178 -25.33453 -24.80732 -23.54486 -23.13251 -22.85696 -21.69885 -20.97193 -18.60870 -18.34986 -17.72615 -17.36688 -16.91686 -16.74555 -16.35641 -15.78932 -15.15635 -15.10714 -14.85366 -14.37015 -14.28203 -13.94520 -13.68438 -13.27732 -13.14991 -12.75239 -12.61301 -12.41484 -12.38560 -12.06973 -11.99934 -11.83897 -11.53084 -11.41653 -11.24836 -11.16213 -10.86480 -10.48088 -9.64079 -8.56181 -7.85525 -5.45688 1.31060 1.37054 1.47590 1.51813 1.69491 2.43617 2.69299 2.87864 3.12243 3.26871 3.43924 3.66617 3.69403 3.92204 3.99133 4.09210 4.24328 4.36611 4.48499 4.50482 4.54296 4.65957 4.71405 4.77321 4.93318 4.98226 4.99383 5.08911 5.17112 5.28889 5.39563 5.57632 5.62553 5.64711 5.73868 6.40395 6.53691 7.03934 7.13234 7.84127 8.26890 9.04347 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.019581 B = 0.007524 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.580444 B = 3720.597540 C = 4546.029086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.022 4.022 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.293 1.293 6 H -0.300 1.300 7 C -0.233 4.233 8 H 0.051 0.949 9 N -0.563 5.563 10 C 0.135 3.865 11 C 0.049 3.951 12 H 0.122 0.878 13 C 0.083 3.917 14 N -0.603 5.603 15 C 0.101 3.899 16 C -0.196 4.196 17 C -0.194 4.194 18 C 0.627 3.373 19 O -0.580 6.580 20 O -0.330 6.330 21 C 0.104 3.896 22 C -0.190 4.190 23 C -0.212 4.212 24 H 0.247 0.753 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.104 0.896 29 H 0.185 0.815 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 -10.522 11.399 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.219 4.219 3 Si 0.752 3.248 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.228 1.228 7 C -0.364 4.364 8 H 0.068 0.932 9 N -0.279 5.279 10 C 0.008 3.992 11 C -0.008 4.008 12 H 0.140 0.860 13 C -0.039 4.039 14 N -0.349 5.349 15 C -0.001 4.001 16 C -0.234 4.234 17 C -0.233 4.233 18 C 0.382 3.618 19 O -0.471 6.471 20 O -0.239 6.239 21 C -0.004 4.004 22 C -0.229 4.229 23 C -0.253 4.253 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.122 0.878 29 H 0.202 0.798 30 H 0.151 0.849 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.995 -9.859 11.357 15.561 hybrid contribution 0.633 1.690 -0.527 1.880 sum -3.362 -8.170 10.830 13.976 Atomic orbital electron populations 1.70060 1.05774 1.25680 1.53644 1.25307 0.95384 0.99954 1.01277 0.86042 0.78727 0.82315 0.77688 1.19636 1.21880 1.22808 1.18920 0.93594 0.86665 1.37232 0.93157 1.43460 1.48781 1.02146 1.33510 1.21350 0.90953 1.03648 0.83217 1.25124 0.90321 0.87659 0.97731 0.85988 1.23091 0.99859 0.90053 0.90931 1.47601 1.30113 1.31808 1.25333 1.21892 1.01078 0.92534 0.84570 1.23681 0.97556 1.01999 1.00135 1.23393 0.99114 0.98565 1.02205 1.19147 0.80674 0.82369 0.79564 1.90804 1.61086 1.27998 1.67225 1.87475 1.53531 1.44761 1.38139 1.21643 1.01304 0.89486 0.87965 1.23037 0.92164 1.02013 1.05638 1.23273 0.97319 1.01055 1.03653 0.94374 0.89829 0.91058 0.84732 0.87795 0.79815 0.84868 0.89396 0.92743 0.84486 0.85388 0.91549 0.87041 0.87538 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.69 11.33 21.65 0.25 -52.45 16 2 C -0.02 -1.26 4.97 84.86 0.42 -0.84 16 3 Si 0.92 49.00 29.61 68.60 2.03 51.03 16 4 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 6 H -0.30 -17.11 7.11 99.48 0.71 -16.41 16 7 C -0.23 -12.74 8.25 84.03 0.69 -12.04 16 8 H 0.05 2.85 6.56 -2.91 -0.02 2.83 16 9 N -0.56 -25.85 2.77 -678.06 -1.88 -27.73 16 10 C 0.13 5.45 4.93 86.38 0.43 5.88 16 11 C 0.05 1.64 4.09 30.97 0.13 1.77 16 12 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 13 C 0.08 2.00 7.35 86.64 0.64 2.63 16 14 N -0.60 -18.86 3.30 -927.35 -3.06 -21.92 16 15 C 0.10 2.39 6.95 44.99 0.31 2.70 16 16 C -0.20 -5.16 9.78 30.59 0.30 -4.86 16 17 C -0.19 -4.98 10.36 30.59 0.32 -4.67 16 18 C 0.63 27.41 8.74 129.91 1.13 28.55 16 19 O -0.58 -29.39 14.65 19.68 0.29 -29.10 16 20 O -0.33 -15.22 10.42 -47.33 -0.49 -15.71 16 21 C 0.10 3.86 6.56 44.99 0.30 4.16 16 22 C -0.19 -6.89 9.80 30.62 0.30 -6.59 16 23 C -0.21 -7.77 10.36 30.62 0.32 -7.45 16 24 H 0.25 14.26 8.32 -92.71 -0.77 13.49 16 25 H 0.08 2.82 8.07 -2.39 -0.02 2.80 16 26 H 0.07 3.57 5.36 -2.39 -0.01 3.55 16 27 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.10 2.28 7.74 -2.39 -0.02 2.26 16 29 H 0.18 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.09 3.21 5.34 -2.39 -0.01 3.19 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.13 3.73 8.14 -2.39 -0.02 3.72 16 35 H 0.07 2.84 6.37 -2.39 -0.02 2.82 16 36 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 38 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -76.61 314.72 3.47 -73.14 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.06 Total: 13.51 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.28 Total: 9.23 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -4.69 Total: -102.10 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.20 Total: -44.81 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Total: -76.61 3.47 -73.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844289674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.548 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds