Wall clock time and date at job start Mon Mar 30 2020 04:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46724 * 270.00149 * 3 2 1 5 5 H 1.48491 * 109.46836 * 30.00185 * 3 2 1 6 6 H 1.48495 * 109.47083 * 150.00370 * 3 2 1 7 7 C 1.38813 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00298 * 200.60413 * 7 2 1 9 9 N 1.36942 * 119.99618 * 20.60053 * 7 2 1 10 10 C 1.46497 * 120.00147 * 37.88668 * 9 7 2 11 11 C 1.53001 * 109.47115 * 89.99835 * 10 9 7 12 12 H 1.08997 * 110.46820 * 57.36785 * 11 10 9 13 13 C 1.54090 * 110.51828 * 180.02562 * 11 10 9 14 14 N 1.47098 * 103.77648 * 118.76845 * 13 11 10 15 15 C 1.46497 * 125.56002 * 179.97438 * 14 13 11 16 16 C 1.53007 * 117.49860 * 188.62545 * 15 14 13 17 17 C 1.52997 * 117.49794 * 120.00408 * 15 14 13 18 18 C 1.34004 * 108.87912 * 359.97438 * 14 13 11 19 19 O 1.21517 * 123.07108 * 179.97438 * 18 14 13 20 20 O 1.33769 * 113.85584 * 0.23286 * 18 14 13 21 21 C 1.46507 * 119.99824 * 217.88304 * 9 7 2 22 22 C 1.52998 * 117.49950 * 14.21584 * 21 9 7 23 23 C 1.52996 * 60.00045 * 252.51181 * 22 21 9 24 24 H 0.96998 * 120.00109 * 354.94143 * 1 2 3 25 25 H 1.09007 * 109.47129 * 329.99780 * 10 9 7 26 26 H 1.08997 * 109.47115 * 210.00221 * 10 9 7 27 27 H 1.08999 * 110.56742 * 0.19654 * 13 11 10 28 28 H 1.08998 * 110.69019 * 237.40238 * 13 11 10 29 29 H 1.08998 * 115.54945 * 334.32737 * 15 14 13 30 30 H 1.08998 * 117.49449 * 359.97438 * 16 15 14 31 31 H 1.08999 * 117.49799 * 145.01953 * 16 15 14 32 32 H 1.09000 * 117.49960 * 214.98030 * 17 15 14 33 33 H 1.08995 * 117.50171 * 359.97438 * 17 15 14 34 34 H 1.09000 * 115.54680 * 159.92350 * 21 9 7 35 35 H 1.09007 * 117.49886 * 359.97438 * 22 21 9 36 36 H 1.08996 * 117.50092 * 145.01598 * 22 21 9 37 37 H 1.09000 * 117.49652 * 252.51238 * 23 22 21 38 38 H 1.09004 * 117.50253 * 107.49339 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0384 -1.2322 0.3286 9 7 1.3911 -2.3500 -0.4183 10 6 0.4580 -2.3098 -1.5470 11 6 1.2227 -2.5522 -2.8498 12 1 1.7499 -3.5054 -2.8107 13 6 0.2627 -2.5143 -4.0545 14 7 0.7653 -1.3965 -4.8679 15 6 0.1924 -0.9413 -6.1371 16 6 0.9765 0.1055 -6.9311 17 6 -0.3120 0.5015 -6.2074 18 6 1.8326 -0.8624 -4.2586 19 8 2.4514 0.0806 -4.7108 20 8 2.1580 -1.4658 -3.1099 21 6 1.6621 -3.6181 0.2633 22 6 2.3683 -3.5546 1.6191 23 6 3.1229 -4.0560 0.3863 24 1 -0.4850 0.8367 0.0741 25 1 -0.0243 -1.3330 -1.5850 26 1 -0.2988 -3.0839 -1.4204 27 1 -0.7579 -2.3194 -3.7250 28 1 0.3112 -3.4478 -4.6151 29 1 -0.3567 -1.6945 -6.7020 30 1 1.9184 0.4557 -6.5089 31 1 0.9435 0.0409 -8.0187 32 1 -1.1928 0.6975 -6.8188 33 1 -0.2180 1.1118 -5.3092 34 1 0.9133 -4.3974 0.1215 35 1 2.6316 -2.5693 2.0038 36 1 2.0840 -4.2921 2.3697 37 1 3.3352 -5.1234 0.3258 38 1 3.8825 -3.4006 -0.0400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844289709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:17 Heat of formation + Delta-G solvation = 20.394288 kcal Electronic energy + Delta-G solvation = -21309.358748 eV Core-core repulsion = 18155.424999 eV Total energy + Delta-G solvation = -3153.933749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.05048 -37.67469 -36.90116 -36.22292 -33.55319 -33.32856 -31.19597 -28.99426 -25.44440 -23.72342 -23.50815 -22.31749 -21.67348 -21.38064 -20.07334 -19.55849 -17.05394 -16.92219 -16.14908 -15.73703 -15.36617 -15.25420 -14.43884 -13.97505 -13.94529 -13.64935 -13.38378 -12.94879 -12.76363 -12.64695 -11.93159 -11.62345 -11.42140 -11.12375 -10.92313 -10.77813 -10.69985 -10.57909 -10.52322 -10.36295 -9.99945 -9.79543 -9.68201 -9.63910 -9.30644 -8.43608 -8.39672 -6.54457 -5.86013 -3.41219 2.81094 3.22715 3.42728 3.49360 3.57311 3.96730 4.08377 4.42683 4.64017 4.80141 4.90284 4.92409 5.03500 5.17044 5.29462 5.36089 5.49408 5.51559 5.76816 5.82522 5.84766 5.96013 6.08218 6.13771 6.22094 6.29336 6.39987 6.46007 6.50344 6.60193 6.86783 6.96416 7.16967 7.35262 7.83131 7.99352 8.46502 8.57783 9.10069 9.73317 10.25958 11.16658 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.007722 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.586958 B = 3624.928200 C = 4450.413605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.022 3.978 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.062 0.938 9 N -0.542 5.542 10 C 0.139 3.861 11 C 0.051 3.949 12 H 0.098 0.902 13 C 0.075 3.925 14 N -0.611 5.611 15 C 0.102 3.898 16 C -0.190 4.190 17 C -0.192 4.192 18 C 0.641 3.359 19 O -0.537 6.537 20 O -0.289 6.289 21 C 0.122 3.878 22 C -0.194 4.194 23 C -0.227 4.227 24 H 0.256 0.744 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 -7.171 -9.548 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.080 0.920 9 N -0.257 5.257 10 C 0.012 3.988 11 C -0.007 4.007 12 H 0.116 0.884 13 C -0.049 4.049 14 N -0.357 5.357 15 C -0.001 4.001 16 C -0.227 4.227 17 C -0.231 4.231 18 C 0.397 3.603 19 O -0.424 6.424 20 O -0.197 6.197 21 C 0.013 3.987 22 C -0.233 4.233 23 C -0.268 4.268 24 H 0.066 0.934 25 H 0.126 0.874 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.816 -6.478 -9.625 11.938 hybrid contribution 0.312 0.716 0.015 0.781 sum -2.504 -5.762 -9.610 11.481 Atomic orbital electron populations 1.69838 1.05593 1.26187 1.51968 1.25109 0.95058 0.98696 0.98906 0.86404 0.79429 0.83270 0.78433 1.20507 1.21839 1.20162 1.18838 0.94036 0.84424 1.40634 0.91998 1.43259 1.49774 1.02751 1.29930 1.21379 0.90597 1.04350 0.82488 1.25083 0.89090 0.89164 0.97379 0.88434 1.22869 1.00266 0.89951 0.91837 1.47402 1.30959 1.34635 1.22742 1.21222 1.02206 0.91700 0.85012 1.23756 0.99091 1.01595 0.98285 1.23394 0.97992 0.98221 1.03506 1.18830 0.79786 0.82024 0.79654 1.90834 1.57320 1.27844 1.66411 1.87520 1.50654 1.45671 1.35814 1.21176 0.91559 0.90500 0.95463 1.23054 1.06600 1.02157 0.91444 1.23378 0.99778 0.99002 1.04644 0.93355 0.87369 0.92795 0.89196 0.90072 0.85174 0.85031 0.88615 0.88294 0.88448 0.89315 0.88246 0.90804 0.90941 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 11.44 55.49 0.63 -24.46 16 2 C 0.02 0.62 4.97 -17.43 -0.09 0.53 16 3 Si 0.90 22.88 29.61 -169.99 -5.03 17.85 16 4 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.69 7.65 -15.06 -0.12 -6.80 16 8 H 0.06 1.72 7.21 -52.49 -0.38 1.34 16 9 N -0.54 -12.67 2.77 -165.66 -0.46 -13.13 16 10 C 0.14 2.90 4.92 -4.04 -0.02 2.88 16 11 C 0.05 0.93 4.10 -26.16 -0.11 0.82 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 13 C 0.07 1.05 7.34 -3.15 -0.02 1.03 16 14 N -0.61 -10.22 3.30 -171.22 -0.56 -10.78 16 15 C 0.10 1.38 6.95 -67.93 -0.47 0.90 16 16 C -0.19 -2.63 9.78 -26.73 -0.26 -2.90 16 17 C -0.19 -2.62 10.36 -26.73 -0.28 -2.89 16 18 C 0.64 13.84 8.74 53.71 0.47 14.31 16 19 O -0.54 -12.93 14.65 -19.12 -0.28 -13.21 16 20 O -0.29 -6.58 10.40 -37.82 -0.39 -6.97 16 21 C 0.12 2.45 6.62 -67.93 -0.45 2.00 16 22 C -0.19 -3.76 9.81 -26.73 -0.26 -4.03 16 23 C -0.23 -4.21 10.08 -26.73 -0.27 -4.48 16 24 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 25 H 0.11 2.67 5.51 -51.92 -0.29 2.39 16 26 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 27 H 0.09 1.18 7.73 -51.93 -0.40 0.78 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.13 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.13 2.32 5.34 -51.93 -0.28 2.04 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 35 H 0.10 2.18 6.96 -51.92 -0.36 1.82 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.77 7.99 -51.93 -0.41 1.35 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -31.90 315.11 -8.70 -40.59 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.47 Total: 3.97 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.87 Total: 1.39 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.39 Total: -48.37 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.67 Total: -20.18 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.90 -8.70 -40.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844289709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.988 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds