Wall clock time and date at job start Mon Mar 30 2020 04:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46724 * 270.00149 * 3 2 1 5 5 H 1.48491 * 109.46836 * 30.00185 * 3 2 1 6 6 H 1.48495 * 109.47083 * 150.00370 * 3 2 1 7 7 C 1.38813 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00298 * 200.60413 * 7 2 1 9 9 N 1.36942 * 119.99618 * 20.60053 * 7 2 1 10 10 C 1.46497 * 120.00147 * 37.88668 * 9 7 2 11 11 C 1.53001 * 109.47115 * 89.99835 * 10 9 7 12 12 H 1.08997 * 110.46820 * 57.36785 * 11 10 9 13 13 C 1.54090 * 110.51828 * 180.02562 * 11 10 9 14 14 N 1.47098 * 103.77648 * 118.76845 * 13 11 10 15 15 C 1.46497 * 125.56002 * 179.97438 * 14 13 11 16 16 C 1.53007 * 117.49860 * 188.62545 * 15 14 13 17 17 C 1.52997 * 117.49794 * 120.00408 * 15 14 13 18 18 C 1.34004 * 108.87912 * 359.97438 * 14 13 11 19 19 O 1.21517 * 123.07108 * 179.97438 * 18 14 13 20 20 O 1.33769 * 113.85584 * 0.23286 * 18 14 13 21 21 C 1.46507 * 119.99824 * 217.88304 * 9 7 2 22 22 C 1.52998 * 117.49950 * 14.21584 * 21 9 7 23 23 C 1.52996 * 60.00045 * 252.51181 * 22 21 9 24 24 H 0.96998 * 120.00109 * 354.94143 * 1 2 3 25 25 H 1.09007 * 109.47129 * 329.99780 * 10 9 7 26 26 H 1.08997 * 109.47115 * 210.00221 * 10 9 7 27 27 H 1.08999 * 110.56742 * 0.19654 * 13 11 10 28 28 H 1.08998 * 110.69019 * 237.40238 * 13 11 10 29 29 H 1.08998 * 115.54945 * 334.32737 * 15 14 13 30 30 H 1.08998 * 117.49449 * 359.97438 * 16 15 14 31 31 H 1.08999 * 117.49799 * 145.01953 * 16 15 14 32 32 H 1.09000 * 117.49960 * 214.98030 * 17 15 14 33 33 H 1.08995 * 117.50171 * 359.97438 * 17 15 14 34 34 H 1.09000 * 115.54680 * 159.92350 * 21 9 7 35 35 H 1.09007 * 117.49886 * 359.97438 * 22 21 9 36 36 H 1.08996 * 117.50092 * 145.01598 * 22 21 9 37 37 H 1.09000 * 117.49652 * 252.51238 * 23 22 21 38 38 H 1.09004 * 117.50253 * 107.49339 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0384 -1.2322 0.3286 9 7 1.3911 -2.3500 -0.4183 10 6 0.4580 -2.3098 -1.5470 11 6 1.2227 -2.5522 -2.8498 12 1 1.7499 -3.5054 -2.8107 13 6 0.2627 -2.5143 -4.0545 14 7 0.7653 -1.3965 -4.8679 15 6 0.1924 -0.9413 -6.1371 16 6 0.9765 0.1055 -6.9311 17 6 -0.3120 0.5015 -6.2074 18 6 1.8326 -0.8624 -4.2586 19 8 2.4514 0.0806 -4.7108 20 8 2.1580 -1.4658 -3.1099 21 6 1.6621 -3.6181 0.2633 22 6 2.3683 -3.5546 1.6191 23 6 3.1229 -4.0560 0.3863 24 1 -0.4850 0.8367 0.0741 25 1 -0.0243 -1.3330 -1.5850 26 1 -0.2988 -3.0839 -1.4204 27 1 -0.7579 -2.3194 -3.7250 28 1 0.3112 -3.4478 -4.6151 29 1 -0.3567 -1.6945 -6.7020 30 1 1.9184 0.4557 -6.5089 31 1 0.9435 0.0409 -8.0187 32 1 -1.1928 0.6975 -6.8188 33 1 -0.2180 1.1118 -5.3092 34 1 0.9133 -4.3974 0.1215 35 1 2.6316 -2.5693 2.0038 36 1 2.0840 -4.2921 2.3697 37 1 3.3352 -5.1234 0.3258 38 1 3.8825 -3.4006 -0.0400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844289709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:16 Heat of formation + Delta-G solvation = 0.155521 kcal Electronic energy + Delta-G solvation = -21310.236367 eV Core-core repulsion = 18155.424999 eV Total energy + Delta-G solvation = -3154.811368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.52495 -39.15943 -38.41928 -37.73142 -35.32906 -34.67668 -33.03859 -30.61596 -27.17802 -25.35231 -24.81860 -23.51576 -23.05288 -22.89884 -21.73161 -21.04402 -18.62019 -18.36586 -17.75014 -17.43054 -16.90005 -16.71087 -16.23936 -15.79567 -15.17399 -15.15365 -14.76421 -14.60393 -14.17015 -13.95351 -13.62358 -13.22297 -13.09790 -12.81970 -12.62488 -12.42362 -12.33983 -12.13806 -12.07218 -11.93215 -11.56287 -11.42170 -11.29863 -11.17274 -10.87263 -10.45803 -9.65066 -8.45400 -7.90369 -5.46997 1.29380 1.38704 1.43548 1.50886 1.68308 2.39623 2.68125 2.86893 3.13909 3.23717 3.47747 3.65925 3.68541 3.91334 3.98083 4.07814 4.24335 4.36102 4.47875 4.51132 4.57382 4.61005 4.72309 4.76986 4.92652 4.96780 4.99969 5.07758 5.17042 5.28095 5.40520 5.59230 5.59936 5.62608 5.70244 6.42052 6.52634 7.02722 7.13190 7.82992 8.27214 9.04730 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.007722 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.586958 B = 3624.928200 C = 4450.413605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.017 4.017 3 Si 0.927 3.073 4 H -0.308 1.308 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.235 4.235 8 H 0.041 0.959 9 N -0.561 5.561 10 C 0.138 3.862 11 C 0.049 3.951 12 H 0.121 0.879 13 C 0.083 3.917 14 N -0.603 5.603 15 C 0.101 3.899 16 C -0.197 4.197 17 C -0.194 4.194 18 C 0.627 3.373 19 O -0.581 6.581 20 O -0.331 6.331 21 C 0.108 3.892 22 C -0.199 4.199 23 C -0.208 4.208 24 H 0.251 0.749 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.185 0.815 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.053 0.947 34 H 0.125 0.875 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 -10.407 -10.975 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.215 4.215 3 Si 0.758 3.242 4 H -0.236 1.236 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.366 4.366 8 H 0.059 0.941 9 N -0.277 5.277 10 C 0.011 3.989 11 C -0.008 4.008 12 H 0.138 0.862 13 C -0.040 4.040 14 N -0.348 5.348 15 C -0.001 4.001 16 C -0.234 4.234 17 C -0.233 4.233 18 C 0.383 3.617 19 O -0.471 6.471 20 O -0.240 6.240 21 C 0.000 4.000 22 C -0.238 4.238 23 C -0.248 4.248 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.123 0.877 28 H 0.152 0.848 29 H 0.202 0.798 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.434 -9.753 -11.043 15.386 hybrid contribution 0.855 1.657 0.469 1.923 sum -3.578 -8.096 -10.574 13.789 Atomic orbital electron populations 1.69899 1.05782 1.25799 1.53930 1.25407 0.95566 0.99949 1.00536 0.85890 0.79325 0.82401 0.76603 1.23607 1.21045 1.19617 1.18752 0.93205 0.86020 1.38633 0.94100 1.43427 1.50011 1.02892 1.31395 1.21365 0.91007 1.03326 0.83173 1.25137 0.89358 0.88631 0.97715 0.86178 1.23094 0.99403 0.91099 0.90359 1.47601 1.29265 1.34506 1.23477 1.21900 1.01674 0.92777 0.83724 1.23686 0.97164 1.02265 1.00269 1.23393 0.99420 0.98037 1.02422 1.19151 0.80946 0.81963 0.79690 1.90807 1.59147 1.29755 1.67433 1.87457 1.52576 1.47222 1.36749 1.21523 0.93217 0.89804 0.95488 1.23056 1.07048 1.01404 0.92276 1.23308 0.97919 1.00498 1.03085 0.93953 0.91372 0.89461 0.87721 0.84771 0.79765 0.89430 0.84818 0.84429 0.92816 0.85728 0.91798 0.87667 0.87128 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.40 11.44 21.65 0.25 -52.15 16 2 C -0.02 -0.97 4.97 84.86 0.42 -0.55 16 3 Si 0.93 48.99 29.61 68.60 2.03 51.03 16 4 H -0.31 -17.59 7.11 99.48 0.71 -16.89 16 5 H -0.28 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.27 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.24 -12.90 7.65 84.03 0.64 -12.25 16 8 H 0.04 2.38 7.21 -2.91 -0.02 2.36 16 9 N -0.56 -25.89 2.77 -678.02 -1.88 -27.77 16 10 C 0.14 5.56 4.92 86.38 0.42 5.98 16 11 C 0.05 1.67 4.10 30.96 0.13 1.79 16 12 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 13 C 0.08 2.02 7.34 86.63 0.64 2.65 16 14 N -0.60 -19.08 3.30 -927.34 -3.06 -22.14 16 15 C 0.10 2.41 6.95 44.99 0.31 2.72 16 16 C -0.20 -5.22 9.78 30.60 0.30 -4.92 16 17 C -0.19 -5.03 10.36 30.59 0.32 -4.71 16 18 C 0.63 27.68 8.74 129.91 1.13 28.82 16 19 O -0.58 -29.65 14.65 19.63 0.29 -29.36 16 20 O -0.33 -15.40 10.40 -47.29 -0.49 -15.89 16 21 C 0.11 4.05 6.62 44.99 0.30 4.35 16 22 C -0.20 -7.41 9.81 30.59 0.30 -7.11 16 23 C -0.21 -7.21 10.08 30.59 0.31 -6.90 16 24 H 0.25 14.27 8.32 -92.71 -0.77 13.49 16 25 H 0.07 3.39 5.51 -2.38 -0.01 3.37 16 26 H 0.09 2.87 8.04 -2.39 -0.02 2.85 16 27 H 0.10 2.31 7.73 -2.39 -0.02 2.29 16 28 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.19 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.09 3.22 5.34 -2.39 -0.01 3.21 16 31 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.13 3.81 8.10 -2.39 -0.02 3.79 16 35 H 0.06 2.84 6.96 -2.38 -0.02 2.82 16 36 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.06 2.34 7.99 -2.39 -0.02 2.32 16 Total: -1.00 -76.34 315.11 3.41 -72.93 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.05 Total: 13.48 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 5.22 Total: 9.87 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -4.69 Total: -102.05 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.20 Total: -45.25 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.03 kcal Total: -76.34 3.41 -72.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844289709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.083 kcal (2) G-P(sol) polarization free energy of solvation -76.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds