Wall clock time and date at job start Mon Mar 30 2020 05:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47327 * 2 1 4 4 N 1.30254 * 125.61534 * 90.00204 * 3 2 1 5 5 C 1.34483 * 108.70003 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.16500 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46816 * 275.02593 * 6 5 4 8 8 C 1.34777 * 119.99783 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99728 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99958 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.47171 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47284 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47471 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99741 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00576 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99345 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00388 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47129 * 59.99760 * 17 15 13 19 19 H 1.48493 * 109.47402 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46944 * 300.00155 * 17 15 13 21 21 C 1.34322 * 107.66912 * 359.97438 * 5 4 3 22 22 O 1.33960 * 125.62340 * 269.97790 * 3 2 1 23 23 H 1.08999 * 109.47023 * 59.99891 * 1 2 3 24 24 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47215 * 299.99899 * 1 2 3 26 26 H 1.09002 * 109.47215 * 240.00101 * 2 1 3 27 27 H 1.09000 * 109.47436 * 120.00765 * 2 1 3 28 28 H 1.08993 * 109.46964 * 35.02215 * 6 5 4 29 29 H 1.08999 * 109.47047 * 155.02376 * 6 5 4 30 30 H 0.96997 * 119.99905 * 359.97438 * 7 6 5 31 31 H 1.08999 * 109.46881 * 299.99994 * 10 8 7 32 32 H 1.08999 * 109.47185 * 60.00017 * 10 8 7 33 33 H 1.08999 * 109.46740 * 300.00376 * 11 10 8 34 34 H 1.09009 * 109.46980 * 60.00194 * 11 10 8 35 35 H 1.09004 * 109.47289 * 300.00264 * 12 11 10 36 36 H 1.08999 * 109.47085 * 60.00084 * 12 11 10 37 37 H 0.97002 * 119.99724 * 179.97438 * 16 15 13 38 38 H 1.08003 * 126.44526 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1359 1.0589 5 6 2.7147 3.3488 0.6676 6 6 3.1160 4.4848 1.5729 7 7 1.9246 5.2434 1.9620 8 6 2.0419 6.3122 2.7747 9 8 3.1338 6.6456 3.1841 10 6 0.8165 7.0928 3.1745 11 6 1.2239 8.2461 4.0937 12 6 -0.0201 9.0391 4.4992 13 6 0.3812 10.1754 5.4040 14 1 1.4198 10.3175 5.6642 15 6 -0.5772 11.0336 5.8996 16 7 -1.8419 10.8602 5.5831 17 14 -0.0797 12.4425 7.0206 18 1 0.8652 13.3358 6.3034 19 1 -1.2871 13.2121 7.4143 20 1 0.5785 11.8993 8.2360 21 6 2.7214 3.3651 -0.6755 22 8 2.2928 2.1563 -1.0889 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.5997 4.0855 2.4643 29 1 3.8090 5.1413 1.0467 30 1 1.0515 4.9768 1.6342 31 1 0.3330 7.4918 2.2829 32 1 0.1234 6.4366 3.7009 33 1 1.7073 7.8467 4.9853 34 1 1.9172 8.9025 3.5676 35 1 -0.5031 9.4385 3.6073 36 1 -0.7137 8.3830 5.0250 37 1 -2.5163 11.4638 5.9321 38 1 3.0140 4.1921 -1.3056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847073570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:30 Heat of formation + Delta-G solvation = -42.282354 kcal Electronic energy + Delta-G solvation = -18894.440615 eV Core-core repulsion = 15737.789002 eV Total energy + Delta-G solvation = -3156.651613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.73506 -39.42405 -35.93032 -34.90491 -34.15001 -33.71541 -32.00917 -30.24043 -28.16802 -26.40509 -24.73813 -23.63057 -21.85563 -21.22585 -20.62920 -19.73792 -17.68363 -17.05808 -16.75623 -16.05344 -15.77255 -15.59889 -15.16279 -15.06068 -14.40637 -14.28502 -13.68070 -13.38869 -13.17326 -12.89339 -12.49124 -12.22681 -12.20372 -11.80163 -11.67852 -11.51088 -11.29190 -10.89070 -10.75659 -10.58920 -10.52399 -9.74721 -9.63957 -9.32606 -9.14366 -9.03698 -8.96127 -8.28975 -5.94897 -3.96225 1.04236 2.14978 2.35045 2.94393 3.38724 3.41718 3.42167 3.46206 3.60014 4.32207 4.43223 4.51763 4.65022 4.66535 4.86468 5.12559 5.20852 5.30360 5.32958 5.41058 5.45615 5.58446 5.62552 5.68886 5.76192 5.76888 5.89469 6.28934 6.42696 6.76694 6.96996 7.19975 7.37462 7.60016 7.74128 7.87277 8.06020 8.45655 8.50215 9.10736 9.67503 11.16656 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.002637 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.947612 B =10617.183734 C =11029.360531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C 0.193 3.807 4 N -0.469 5.469 5 C -0.030 4.030 6 C 0.203 3.797 7 N -0.736 5.736 8 C 0.515 3.485 9 O -0.537 6.537 10 C -0.138 4.138 11 C -0.095 4.095 12 C 0.020 3.980 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.053 4.053 22 O -0.201 6.201 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.400 0.600 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 -22.372 -16.018 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.015 4.015 4 N -0.198 5.198 5 C -0.150 4.150 6 C 0.079 3.921 7 N -0.390 5.390 8 C 0.303 3.697 9 O -0.413 6.413 10 C -0.177 4.177 11 C -0.133 4.133 12 C -0.017 4.017 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.125 4.125 22 O -0.087 6.087 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.234 0.766 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.044 -22.275 -15.096 27.578 hybrid contribution -0.110 0.975 -0.318 1.031 sum 5.934 -21.300 -15.413 26.953 Atomic orbital electron populations 1.21793 0.92880 1.03129 1.03145 1.20084 0.97018 0.84102 1.05230 1.26420 0.99594 0.96968 0.78529 1.70390 1.15950 1.03293 1.30188 1.21770 1.05765 0.94668 0.92784 1.19366 0.88208 0.87717 0.96839 1.46140 1.09959 1.30951 1.51925 1.21281 0.92092 0.79471 0.76873 1.90682 1.28830 1.67900 1.53902 1.21845 0.94795 0.98903 1.02200 1.21449 1.00422 0.94232 0.97189 1.19128 0.91844 0.94373 0.96331 1.21244 0.93658 1.11906 1.28822 0.92614 1.25022 0.94975 0.97897 0.96642 1.69956 1.00245 1.38279 1.45332 0.86645 0.77764 0.82332 0.81201 1.20233 1.21354 1.20225 1.24934 1.04013 0.87414 0.96115 1.84466 1.63650 1.22799 1.37834 0.92117 0.90787 0.91539 0.88880 0.87537 0.89869 0.89840 0.76590 0.89354 0.89313 0.92659 0.92681 0.96621 0.96601 0.93031 0.76457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.89 37.15 0.37 -0.38 16 2 C -0.03 -0.14 6.56 -27.89 -0.18 -0.33 16 3 C 0.19 1.77 7.60 -12.95 -0.10 1.67 16 4 N -0.47 -5.40 11.29 -7.36 -0.08 -5.48 16 5 C -0.03 -0.32 6.48 -82.81 -0.54 -0.86 16 6 C 0.20 2.35 6.21 -5.19 -0.03 2.32 16 7 N -0.74 -9.29 5.55 -61.47 -0.34 -9.63 16 8 C 0.51 8.48 7.83 -10.99 -0.09 8.39 16 9 O -0.54 -10.89 15.98 5.56 0.09 -10.80 16 10 C -0.14 -2.33 5.70 -27.88 -0.16 -2.49 16 11 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 12 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 13 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 14 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 17 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.05 -0.45 12.08 29.35 0.35 -0.09 16 22 O -0.20 -1.84 10.77 5.37 0.06 -1.79 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.40 4.28 8.46 -40.82 -0.35 3.93 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.05 1.25 8.10 -51.92 -0.42 0.83 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.22 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -35.38 332.41 -6.39 -41.77 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -5.80 Total: -2.10 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.04 Total: -7.54 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.31 Total: -41.78 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.15 Total: -12.59 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.38 -6.39 -41.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847073570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.511 kcal (2) G-P(sol) polarization free energy of solvation -35.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds