Wall clock time and date at job start Mon Mar 30 2020 05:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47327 * 2 1 4 4 N 1.30254 * 125.61534 * 90.00204 * 3 2 1 5 5 C 1.34483 * 108.70003 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.16500 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46816 * 275.02593 * 6 5 4 8 8 C 1.34777 * 119.99783 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99728 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.99958 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.47171 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47284 * 179.97438 * 11 10 8 13 13 C 1.50696 * 109.47471 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99741 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00576 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99345 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00388 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47129 * 59.99760 * 17 15 13 19 19 H 1.48493 * 109.47402 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46944 * 300.00155 * 17 15 13 21 21 C 1.34322 * 107.66912 * 359.97438 * 5 4 3 22 22 O 1.33960 * 125.62340 * 269.97790 * 3 2 1 23 23 H 1.08999 * 109.47023 * 59.99891 * 1 2 3 24 24 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47215 * 299.99899 * 1 2 3 26 26 H 1.09002 * 109.47215 * 240.00101 * 2 1 3 27 27 H 1.09000 * 109.47436 * 120.00765 * 2 1 3 28 28 H 1.08993 * 109.46964 * 35.02215 * 6 5 4 29 29 H 1.08999 * 109.47047 * 155.02376 * 6 5 4 30 30 H 0.96997 * 119.99905 * 359.97438 * 7 6 5 31 31 H 1.08999 * 109.46881 * 299.99994 * 10 8 7 32 32 H 1.08999 * 109.47185 * 60.00017 * 10 8 7 33 33 H 1.08999 * 109.46740 * 300.00376 * 11 10 8 34 34 H 1.09009 * 109.46980 * 60.00194 * 11 10 8 35 35 H 1.09004 * 109.47289 * 300.00264 * 12 11 10 36 36 H 1.08999 * 109.47085 * 60.00084 * 12 11 10 37 37 H 0.97002 * 119.99724 * 179.97438 * 16 15 13 38 38 H 1.08003 * 126.44526 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1359 1.0589 5 6 2.7147 3.3488 0.6676 6 6 3.1160 4.4848 1.5729 7 7 1.9246 5.2434 1.9620 8 6 2.0419 6.3122 2.7747 9 8 3.1338 6.6456 3.1841 10 6 0.8165 7.0928 3.1745 11 6 1.2239 8.2461 4.0937 12 6 -0.0201 9.0391 4.4992 13 6 0.3812 10.1754 5.4040 14 1 1.4198 10.3175 5.6642 15 6 -0.5772 11.0336 5.8996 16 7 -1.8419 10.8602 5.5831 17 14 -0.0797 12.4425 7.0206 18 1 0.8652 13.3358 6.3034 19 1 -1.2871 13.2121 7.4143 20 1 0.5785 11.8993 8.2360 21 6 2.7214 3.3651 -0.6755 22 8 2.2928 2.1563 -1.0889 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.5997 4.0855 2.4643 29 1 3.8090 5.1413 1.0467 30 1 1.0515 4.9768 1.6342 31 1 0.3330 7.4918 2.2829 32 1 0.1234 6.4366 3.7009 33 1 1.7073 7.8467 4.9853 34 1 1.9172 8.9025 3.5676 35 1 -0.5031 9.4385 3.6073 36 1 -0.7137 8.3830 5.0250 37 1 -2.5163 11.4638 5.9321 38 1 3.0140 4.1921 -1.3056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847073570.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:30 Heat of formation + Delta-G solvation = -68.726220 kcal Electronic energy + Delta-G solvation = -18895.587307 eV Core-core repulsion = 15737.789002 eV Total energy + Delta-G solvation = -3157.798305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.43284 -40.74782 -36.90153 -36.09196 -35.53920 -34.55026 -34.00149 -31.14624 -29.74691 -27.59760 -25.53009 -25.20252 -22.69067 -22.26549 -21.88049 -21.22810 -18.76396 -18.24247 -17.83211 -17.62338 -16.87629 -16.82283 -16.48318 -15.83782 -15.80847 -15.23586 -14.84635 -14.63856 -14.24698 -13.98933 -13.77853 -13.55647 -13.50927 -13.04846 -12.61545 -12.58977 -12.50926 -12.43767 -12.30755 -12.04435 -11.63420 -11.54847 -11.46820 -11.28049 -10.86495 -10.53722 -10.18650 -9.87585 -8.19793 -6.29856 0.37389 1.36745 1.39952 1.43017 1.51102 1.62567 1.75017 2.36285 2.44025 2.90530 3.13115 3.58322 3.82780 3.91281 4.17587 4.22319 4.25589 4.27081 4.37702 4.54312 4.57527 4.75444 4.82142 4.86368 4.97230 4.97567 5.07138 5.11041 5.15718 5.19290 5.33497 5.34467 5.54810 5.76061 5.87388 6.27729 6.47754 6.68073 6.85573 7.20791 7.38715 8.91679 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.002637 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.947612 B =10617.183734 C =11029.360531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.027 4.027 3 C 0.192 3.808 4 N -0.506 5.506 5 C -0.056 4.056 6 C 0.207 3.793 7 N -0.716 5.716 8 C 0.520 3.480 9 O -0.580 6.580 10 C -0.130 4.130 11 C -0.082 4.082 12 C 0.026 3.974 13 C -0.548 4.548 14 H 0.052 0.948 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.962 3.038 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.270 1.270 21 C -0.034 4.034 22 O -0.204 6.204 23 H 0.058 0.942 24 H 0.094 0.906 25 H 0.047 0.953 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.412 0.588 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.002 0.998 36 H -0.001 1.001 37 H 0.265 0.735 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -23.046 -17.196 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.065 4.065 3 C -0.016 4.016 4 N -0.235 5.235 5 C -0.174 4.174 6 C 0.083 3.917 7 N -0.369 5.369 8 C 0.308 3.692 9 O -0.460 6.460 10 C -0.169 4.169 11 C -0.120 4.120 12 C -0.012 4.012 13 C -0.586 4.586 14 H 0.070 0.930 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.195 1.195 21 C -0.106 4.106 22 O -0.091 6.091 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.135 0.865 27 H 0.130 0.870 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.248 0.752 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.018 0.982 37 H 0.073 0.927 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.127 -22.985 -16.299 28.836 hybrid contribution -0.167 1.109 -0.002 1.121 sum 5.960 -21.876 -16.301 27.925 Atomic orbital electron populations 1.21771 0.92483 1.04184 1.02112 1.20321 0.97206 0.82271 1.06654 1.27121 0.98556 0.97879 0.78010 1.70349 1.17396 1.04149 1.31623 1.21623 1.07915 0.94393 0.93511 1.19326 0.87607 0.88191 0.96532 1.45935 1.11198 1.29495 1.50269 1.21034 0.91000 0.80093 0.77062 1.90671 1.30115 1.69356 1.55859 1.21678 0.95458 0.97601 1.02211 1.21165 0.97967 0.95337 0.97574 1.19019 0.93120 0.93933 0.95079 1.21677 0.93761 1.13320 1.29882 0.92969 1.25923 0.94898 1.00644 0.98102 1.70064 1.01272 1.39413 1.46287 0.85543 0.77808 0.78849 0.79120 1.19322 1.20368 1.19466 1.25516 1.01711 0.87655 0.95691 1.84503 1.63614 1.23062 1.37884 0.92313 0.88708 0.93332 0.86509 0.87018 0.91764 0.88643 0.75181 0.87139 0.87753 0.94149 0.93759 0.97976 0.98227 0.92653 0.73136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 71.98 0.71 -0.51 16 2 C -0.03 -0.24 6.56 29.85 0.20 -0.04 16 3 C 0.19 3.26 7.60 88.34 0.67 3.93 16 4 N -0.51 -11.26 11.29 -291.99 -3.30 -14.56 16 5 C -0.06 -1.11 6.48 41.26 0.27 -0.84 16 6 C 0.21 4.65 6.21 85.63 0.53 5.18 16 7 N -0.72 -17.29 5.55 -466.77 -2.59 -19.88 16 8 C 0.52 16.83 7.83 87.66 0.69 17.51 16 9 O -0.58 -23.69 15.98 -3.04 -0.05 -23.73 16 10 C -0.13 -4.31 5.70 29.85 0.17 -4.14 16 11 C -0.08 -3.67 4.44 30.59 0.14 -3.54 16 12 C 0.03 1.37 4.97 29.84 0.15 1.52 16 13 C -0.55 -32.62 9.11 25.60 0.23 -32.39 16 14 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 15 C 0.00 0.13 5.46 84.65 0.46 0.59 16 16 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 17 Si 0.96 45.57 29.54 68.60 2.03 47.59 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.03 -0.50 12.08 66.92 0.81 0.31 16 22 O -0.20 -3.31 10.77 -3.70 -0.04 -3.35 16 23 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.41 8.13 8.46 -92.71 -0.78 7.34 16 31 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 32 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 34 H 0.04 2.04 8.10 -2.38 -0.02 2.02 16 35 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 36 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.25 1.61 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -76.96 332.41 1.63 -75.33 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.27 Total: 7.76 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.02 Total: -12.40 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -5.60 Total: -91.19 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.09 Total: -27.09 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -76.96 1.63 -75.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847073570.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.604 kcal (2) G-P(sol) polarization free energy of solvation -76.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds