Wall clock time and date at job start Mon Mar 30 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 O 1.45199 * 109.47075 * 179.97438 * 8 7 6 10 10 C 1.34230 * 116.99614 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99717 * 179.97438 * 10 9 8 13 13 C 1.53003 * 109.47116 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47081 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47248 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99640 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00260 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47193 * 60.00406 * 19 17 15 21 21 H 1.48504 * 109.46938 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47023 * 300.00531 * 19 17 15 23 23 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 24 24 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 25 25 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 26 26 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 27 27 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 29 29 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 30 30 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 32 32 H 1.09000 * 109.47303 * 300.00327 * 12 10 9 33 33 H 1.09003 * 109.46535 * 60.00663 * 12 10 9 34 34 H 1.09000 * 109.47151 * 300.00236 * 13 12 10 35 35 H 1.09003 * 109.46860 * 60.00013 * 13 12 10 36 36 H 1.09000 * 109.47007 * 299.99939 * 14 13 12 37 37 H 1.09003 * 109.47577 * 60.00068 * 14 13 12 38 38 H 0.97001 * 119.99411 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 8 1.1115 -4.3213 -1.4223 10 6 0.8180 -4.8708 -2.6113 11 8 0.9313 -4.2191 -3.6224 12 6 0.3484 -6.3009 -2.6851 13 6 0.0854 -6.6766 -4.1448 14 6 -0.3921 -8.1282 -4.2196 15 6 -0.6517 -8.4982 -5.6573 16 1 -0.4917 -7.7707 -6.4394 17 6 -1.0925 -9.7656 -5.9742 18 7 -1.2868 -10.6515 -5.0219 19 14 -1.4136 -10.2242 -7.7564 20 1 -0.1610 -10.0738 -8.5397 21 1 -1.8771 -11.6332 -7.8290 22 1 -2.4584 -9.3303 -8.3170 23 1 -0.3633 0.0031 1.0277 24 1 -0.3634 0.8884 -0.5165 25 1 -0.3633 -0.8915 -0.5112 26 1 4.4097 1.3412 -0.0122 27 1 4.4776 -1.2831 -0.0089 28 1 0.9328 -2.5761 0.6021 29 1 2.6188 -3.1229 0.4394 30 1 2.4683 -2.8547 -2.0212 31 1 0.7822 -2.3078 -1.8583 32 1 1.1155 -6.9570 -2.2739 33 1 -0.5709 -6.4114 -2.1098 34 1 -0.6816 -6.0205 -4.5563 35 1 1.0048 -6.5660 -4.7197 36 1 0.3747 -8.7846 -3.8080 37 1 -1.3116 -8.2385 -3.6448 38 1 -1.5972 -11.5430 -5.2449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847687990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:37 Heat of formation + Delta-G solvation = -46.226242 kcal Electronic energy + Delta-G solvation = -19022.098166 eV Core-core repulsion = 15865.275533 eV Total energy + Delta-G solvation = -3156.822632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.43964 -40.44666 -36.95703 -34.79308 -34.39623 -32.19565 -32.06793 -29.97031 -28.11594 -27.15307 -24.66685 -23.51773 -21.70751 -21.29856 -20.14199 -19.84027 -17.82720 -17.00571 -16.87774 -16.76866 -16.12753 -15.34994 -15.22307 -14.50935 -14.47026 -14.07845 -13.65632 -13.49587 -13.33130 -12.99370 -12.69092 -12.46566 -12.34065 -12.15324 -11.96448 -11.51713 -10.86535 -10.83535 -10.77634 -10.65139 -10.41739 -10.26420 -10.00555 -9.81180 -9.46409 -9.16319 -8.66630 -8.38650 -6.04260 -4.06478 1.61905 2.06683 2.31397 2.84847 2.92858 3.32323 3.36265 3.39667 4.11320 4.16660 4.25276 4.43328 4.46032 4.71039 4.86400 4.89979 4.99551 5.16431 5.20291 5.23764 5.31893 5.44348 5.50418 5.53362 5.57861 5.94577 5.96546 6.35032 6.44336 6.52827 6.73002 6.81601 6.99018 7.60391 7.71584 7.79043 7.82085 7.94938 8.37308 8.99895 9.57910 11.07098 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.052481 B = 0.002544 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.396898 B =11002.126503 C =11052.145856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.208 3.792 3 N -0.491 5.491 4 C -0.027 4.027 5 C -0.057 4.057 6 N -0.455 5.455 7 C 0.107 3.893 8 C 0.050 3.950 9 O -0.360 6.360 10 C 0.462 3.538 11 O -0.503 6.503 12 C -0.110 4.110 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.171 0.829 27 H 0.176 0.824 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.663 17.128 13.975 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 N -0.211 5.211 4 C -0.174 4.174 5 C -0.189 4.189 6 N -0.140 5.140 7 C -0.016 4.016 8 C -0.025 4.025 9 O -0.278 6.278 10 C 0.306 3.694 11 O -0.389 6.389 12 C -0.147 4.147 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.101 0.899 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.188 0.812 27 H 0.193 0.807 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.330 17.826 13.705 23.359 hybrid contribution 0.357 -1.086 -1.047 1.550 sum 6.688 16.740 12.658 22.026 Atomic orbital electron populations 1.20254 0.84810 1.04331 1.03726 1.23416 0.95851 0.81237 1.04885 1.70277 1.02355 1.28164 1.20270 1.22318 0.94810 0.92777 1.07507 1.22775 0.86916 0.97021 1.12147 1.45264 1.06795 1.06744 1.55177 1.21602 1.03566 0.79615 0.96856 1.23148 1.01314 0.81363 0.96682 1.86478 1.77871 1.27535 1.35867 1.24538 0.73540 0.91056 0.80308 1.90673 1.48661 1.63489 1.36057 1.21734 1.03282 0.86574 1.03139 1.21603 1.01550 1.00602 0.90076 1.19118 0.96465 0.88601 0.97358 1.21190 1.44673 0.97344 0.92808 0.92591 1.25015 0.95520 0.96530 0.97359 1.69947 1.46489 1.05035 1.32078 0.86630 0.78729 0.77361 0.85140 1.20204 1.21268 1.20196 0.89924 0.88921 0.90720 0.81169 0.80665 0.87584 0.87483 0.90600 0.90592 0.87903 0.87871 0.92371 0.92394 0.96335 0.96316 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.04 36.00 0.36 -0.16 16 2 C 0.21 2.15 7.90 -155.41 -1.23 0.92 16 3 N -0.49 -6.03 11.25 -10.82 -0.12 -6.15 16 4 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 5 C -0.06 -0.50 11.58 -16.56 -0.19 -0.69 16 6 N -0.45 -4.11 2.75 -113.91 -0.31 -4.42 16 7 C 0.11 0.77 6.06 -4.04 -0.02 0.75 16 8 C 0.05 0.51 5.79 37.16 0.22 0.72 16 9 O -0.36 -4.35 10.22 -39.26 -0.40 -4.75 16 10 C 0.46 6.99 7.96 36.01 0.29 7.28 16 11 O -0.50 -9.19 15.73 -18.75 -0.29 -9.48 16 12 C -0.11 -1.69 5.81 -27.88 -0.16 -1.85 16 13 C -0.10 -2.03 4.44 -26.73 -0.12 -2.15 16 14 C 0.02 0.53 4.97 -27.89 -0.14 0.40 16 15 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.47 7.34 -51.93 -0.38 0.08 16 26 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 27 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.11 0.61 7.94 -51.93 -0.41 0.20 16 29 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.08 0.80 7.63 -51.93 -0.40 0.41 16 32 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -33.82 331.47 -7.84 -41.66 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -5.80 Total: -3.97 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.62 Total: -8.72 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.30 Total: -36.28 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.70 Total: -14.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.82 -7.84 -41.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847687990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.562 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds