Wall clock time and date at job start Mon Mar 30 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 O 1.45199 * 109.47075 * 179.97438 * 8 7 6 10 10 C 1.34230 * 116.99614 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00179 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99717 * 179.97438 * 10 9 8 13 13 C 1.53003 * 109.47116 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47081 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47248 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99640 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00260 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47193 * 60.00406 * 19 17 15 21 21 H 1.48504 * 109.46938 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47023 * 300.00531 * 19 17 15 23 23 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 24 24 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 25 25 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 26 26 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 27 27 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 29 29 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 30 30 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 32 32 H 1.09000 * 109.47303 * 300.00327 * 12 10 9 33 33 H 1.09003 * 109.46535 * 60.00663 * 12 10 9 34 34 H 1.09000 * 109.47151 * 300.00236 * 13 12 10 35 35 H 1.09003 * 109.46860 * 60.00013 * 13 12 10 36 36 H 1.09000 * 109.47007 * 299.99939 * 14 13 12 37 37 H 1.09003 * 109.47577 * 60.00068 * 14 13 12 38 38 H 0.97001 * 119.99411 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 8 1.1115 -4.3213 -1.4223 10 6 0.8180 -4.8708 -2.6113 11 8 0.9313 -4.2191 -3.6224 12 6 0.3484 -6.3009 -2.6851 13 6 0.0854 -6.6766 -4.1448 14 6 -0.3921 -8.1282 -4.2196 15 6 -0.6517 -8.4982 -5.6573 16 1 -0.4917 -7.7707 -6.4394 17 6 -1.0925 -9.7656 -5.9742 18 7 -1.2868 -10.6515 -5.0219 19 14 -1.4136 -10.2242 -7.7564 20 1 -0.1610 -10.0738 -8.5397 21 1 -1.8771 -11.6332 -7.8290 22 1 -2.4584 -9.3303 -8.3170 23 1 -0.3633 0.0031 1.0277 24 1 -0.3634 0.8884 -0.5165 25 1 -0.3633 -0.8915 -0.5112 26 1 4.4097 1.3412 -0.0122 27 1 4.4776 -1.2831 -0.0089 28 1 0.9328 -2.5761 0.6021 29 1 2.6188 -3.1229 0.4394 30 1 2.4683 -2.8547 -2.0212 31 1 0.7822 -2.3078 -1.8583 32 1 1.1155 -6.9570 -2.2739 33 1 -0.5709 -6.4114 -2.1098 34 1 -0.6816 -6.0205 -4.5563 35 1 1.0048 -6.5660 -4.7197 36 1 0.3747 -8.7846 -3.8080 37 1 -1.3116 -8.2385 -3.6448 38 1 -1.5972 -11.5430 -5.2449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847687990.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:37 Heat of formation + Delta-G solvation = -65.180350 kcal Electronic energy + Delta-G solvation = -19022.920077 eV Core-core repulsion = 15865.275533 eV Total energy + Delta-G solvation = -3157.644544 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.13002 -41.60503 -38.06892 -36.18728 -35.55436 -34.10581 -32.68485 -30.92889 -29.70080 -27.80692 -26.23869 -24.60483 -22.77455 -22.39250 -21.46258 -20.69853 -18.91958 -18.48237 -17.95221 -17.75642 -17.46534 -16.51400 -16.22394 -16.20972 -15.43663 -14.91617 -14.72604 -14.51406 -14.25234 -13.98529 -13.83284 -13.64496 -13.32442 -13.25258 -13.02243 -13.01446 -12.64113 -12.53409 -12.46928 -11.80829 -11.74524 -11.57166 -11.40987 -11.19950 -11.01815 -10.74329 -10.53817 -9.35007 -8.20368 -6.30083 0.88571 1.11772 1.28276 1.40844 1.42721 1.50919 2.06413 2.11883 2.41837 3.13242 3.47820 3.53122 3.56495 3.74370 3.91874 4.05315 4.14495 4.16698 4.20374 4.42560 4.49962 4.59044 4.66839 4.69527 4.81826 4.90375 5.02004 5.04281 5.13855 5.25651 5.27390 5.53008 5.73452 5.78279 5.86312 6.15800 6.26251 6.65453 6.85487 7.08203 7.38636 8.90828 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.052481 B = 0.002544 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.396898 B =11002.126503 C =11052.145856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.194 3.806 3 N -0.532 5.532 4 C -0.053 4.053 5 C -0.052 4.052 6 N -0.456 5.456 7 C 0.114 3.886 8 C 0.050 3.950 9 O -0.346 6.346 10 C 0.473 3.527 11 O -0.539 6.539 12 C -0.103 4.103 13 C -0.088 4.088 14 C 0.025 3.975 15 C -0.548 4.548 16 H 0.053 0.947 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.270 1.270 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.185 0.815 27 H 0.205 0.795 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.005 0.995 37 H 0.005 0.995 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 16.968 14.557 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 N -0.253 5.253 4 C -0.200 4.200 5 C -0.184 4.184 6 N -0.141 5.141 7 C -0.008 4.008 8 C -0.025 4.025 9 O -0.262 6.262 10 C 0.318 3.682 11 O -0.428 6.428 12 C -0.140 4.140 13 C -0.126 4.126 14 C -0.012 4.012 15 C -0.586 4.586 16 H 0.071 0.929 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.784 3.216 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.195 1.195 23 H 0.117 0.883 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.202 0.798 27 H 0.222 0.778 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.568 17.674 14.313 23.672 hybrid contribution 0.317 -0.997 -1.185 1.580 sum 6.885 16.678 13.128 22.314 Atomic orbital electron populations 1.20354 0.83145 1.04666 1.04851 1.23926 0.96985 0.81356 1.04600 1.70237 1.03588 1.29705 1.21720 1.22727 0.94770 0.94038 1.08446 1.23267 0.87698 0.96943 1.10496 1.45389 1.06808 1.07120 1.54796 1.21690 1.05315 0.78856 0.94981 1.23302 1.00621 0.79873 0.98700 1.86436 1.77244 1.28676 1.33835 1.24270 0.72754 0.90687 0.80515 1.90673 1.50404 1.64322 1.37442 1.21533 1.05129 0.87423 0.99935 1.21290 1.00392 0.97403 0.93523 1.19008 0.95424 0.91233 0.95514 1.21654 1.44846 0.97711 0.94437 0.92906 1.25876 0.95208 0.96500 1.01824 1.70051 1.47150 1.05432 1.34176 0.85585 0.78861 0.77294 0.79831 1.19479 1.20536 1.19461 0.88341 0.89214 0.89735 0.79816 0.77786 0.85662 0.85323 0.91454 0.91236 0.85889 0.85789 0.93402 0.93474 0.97710 0.97660 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.04 71.24 0.72 -0.23 16 2 C 0.19 3.80 7.90 138.13 1.09 4.89 16 3 N -0.53 -12.95 11.25 -188.13 -2.12 -15.07 16 4 C -0.05 -1.05 11.87 83.52 0.99 -0.06 16 5 C -0.05 -0.82 11.58 83.09 0.96 0.14 16 6 N -0.46 -7.36 2.75 -514.30 -1.41 -8.77 16 7 C 0.11 1.31 6.06 86.38 0.52 1.83 16 8 C 0.05 0.91 5.79 71.98 0.42 1.32 16 9 O -0.35 -7.46 10.22 -51.42 -0.53 -7.99 16 10 C 0.47 13.51 7.96 71.24 0.57 14.07 16 11 O -0.54 -19.33 15.73 21.97 0.35 -18.98 16 12 C -0.10 -2.99 5.81 29.85 0.17 -2.81 16 13 C -0.09 -3.54 4.44 30.59 0.14 -3.41 16 14 C 0.03 1.26 4.97 29.85 0.15 1.41 16 15 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 17 C 0.00 0.24 5.46 84.65 0.46 0.70 16 18 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 19 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.08 0.91 7.34 -2.39 -0.02 0.89 16 26 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 28 H 0.13 1.01 7.94 -2.39 -0.02 0.99 16 29 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 31 H 0.07 1.37 7.63 -2.39 -0.02 1.35 16 32 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -73.11 331.47 6.05 -67.06 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.03 Total: 5.29 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 6.42 Total: -12.93 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -3.25 Total: -78.48 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.18 Total: -26.97 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -73.11 6.05 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847687990.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.880 kcal (2) G-P(sol) polarization free energy of solvation -73.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds