Wall clock time and date at job start Mon Mar 30 2020 04:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35311 * 126.12641 * 2 1 4 4 C 1.39869 * 107.91956 * 180.14993 * 3 2 1 5 5 C 1.50706 * 125.90188 * 179.86436 * 4 3 2 6 6 O 1.45200 * 109.46954 * 359.71411 * 5 4 3 7 7 C 1.34222 * 117.00098 * 179.97438 * 6 5 4 8 8 O 1.20822 * 120.00130 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99989 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.47031 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47459 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99475 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99920 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00452 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99519 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47230 * 90.00311 * 16 14 12 18 18 H 1.48500 * 109.46939 * 210.00296 * 16 14 12 19 19 H 1.48499 * 109.47072 * 330.00097 * 16 14 12 20 20 N 1.30836 * 108.20146 * 359.60152 * 4 3 2 21 21 N 1.34942 * 126.12640 * 179.71386 * 2 1 3 22 22 C 1.46502 * 126.03959 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.46997 * 270.29156 * 1 2 3 24 24 H 1.09005 * 109.46876 * 30.29069 * 1 2 3 25 25 H 1.08995 * 109.47114 * 150.28941 * 1 2 3 26 26 H 1.08000 * 126.04641 * 0.02721 * 3 2 1 27 27 H 1.09000 * 109.47318 * 119.70829 * 5 4 3 28 28 H 1.09000 * 109.47161 * 239.71460 * 5 4 3 29 29 H 1.09003 * 109.47158 * 299.99912 * 9 7 6 30 30 H 1.09003 * 109.47345 * 60.00083 * 9 7 6 31 31 H 1.09003 * 109.46727 * 299.99747 * 10 9 7 32 32 H 1.08998 * 109.47391 * 60.00135 * 10 9 7 33 33 H 1.09003 * 109.47242 * 300.00337 * 11 10 9 34 34 H 1.09003 * 109.47442 * 59.99524 * 11 10 9 35 35 H 0.96996 * 120.00086 * 179.97438 * 15 14 12 36 36 H 1.09010 * 109.47120 * 270.02907 * 22 21 2 37 37 H 1.08999 * 109.46909 * 30.02230 * 22 21 2 38 38 H 1.08997 * 109.47660 * 150.02688 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0035 5 6 4.8544 1.5394 -0.0076 6 8 4.4439 2.9322 -0.0142 7 6 5.4187 3.8548 -0.0180 8 8 6.5767 3.5101 -0.0163 9 6 5.0689 5.3206 -0.0255 10 6 6.3536 6.1516 -0.0293 11 6 5.9985 7.6398 -0.0363 12 6 7.2638 8.4582 -0.0393 13 1 8.2251 7.9661 -0.0361 14 6 7.1941 9.8352 -0.0462 15 7 6.0235 10.4344 -0.0496 16 14 8.7627 10.8497 -0.0506 17 1 9.1789 11.1116 -1.4518 18 1 8.5196 12.1400 0.6430 19 1 9.8366 10.1039 0.6535 20 7 3.6334 -0.6524 0.0031 21 7 2.3026 -1.0899 0.0054 22 6 1.8539 -2.4845 0.0129 23 1 -0.3633 0.0052 1.0277 24 1 -0.3633 0.8874 -0.5184 25 1 -0.3633 -0.8925 -0.5093 26 1 1.9742 2.1211 0.0004 27 1 5.4499 1.3405 0.8834 28 1 5.4500 1.3320 -0.8966 29 1 4.4854 5.5504 -0.9172 30 1 4.4840 5.5592 0.8628 31 1 6.9374 5.9219 0.8622 32 1 6.9381 5.9130 -0.9178 33 1 5.4144 7.8697 -0.9274 34 1 5.4141 7.8781 0.8525 35 1 5.9745 11.4031 -0.0540 36 1 1.7425 -2.8249 1.0425 37 1 0.8955 -2.5606 -0.5005 38 1 2.5899 -3.1058 -0.4975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848865337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:24 Heat of formation + Delta-G solvation = -28.604841 kcal Electronic energy + Delta-G solvation = -18932.416528 eV Core-core repulsion = 15776.358017 eV Total energy + Delta-G solvation = -3156.058511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.54531 -40.17157 -36.57477 -34.27724 -34.04423 -32.28105 -32.09902 -29.38680 -27.87685 -27.31504 -25.56972 -23.94912 -21.32490 -20.43107 -19.95798 -19.52741 -17.31571 -16.93653 -16.62421 -16.31765 -15.90789 -15.58999 -14.47694 -14.44114 -14.35133 -13.96321 -13.59788 -13.30821 -13.27339 -12.77203 -12.65077 -12.45820 -12.28159 -11.99465 -11.85246 -11.41336 -10.81604 -10.81474 -10.77756 -10.65823 -10.55625 -10.19394 -9.71009 -9.38062 -9.30939 -9.07241 -8.70012 -8.32360 -5.97863 -3.99562 1.56035 2.06011 2.50276 2.54404 2.86975 3.35407 3.41308 3.45948 4.18161 4.30657 4.49404 4.58820 4.68895 4.78112 4.99979 5.04857 5.11564 5.20727 5.22750 5.38343 5.43364 5.46124 5.62227 5.65701 5.69259 5.97372 6.13579 6.36541 6.59946 6.65194 6.75710 6.84987 7.10303 7.43922 7.69241 7.81029 8.02034 8.04367 8.45076 9.07276 9.64500 11.13593 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.052886 B = 0.002615 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.311577 B =10704.067151 C =11191.721966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.077 3.923 3 C -0.246 4.246 4 C 0.074 3.926 5 C 0.151 3.849 6 O -0.355 6.355 7 C 0.463 3.537 8 O -0.507 6.507 9 C -0.110 4.110 10 C -0.100 4.100 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.290 5.290 21 N -0.373 5.373 22 C 0.102 3.898 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.156 0.844 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.737 -23.948 0.064 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.275 4.275 4 C -0.091 4.091 5 C 0.075 3.925 6 O -0.272 6.272 7 C 0.307 3.693 8 O -0.393 6.393 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.016 4.016 12 C -0.557 4.557 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 N -0.114 5.114 21 N -0.157 5.157 22 C -0.040 4.040 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.173 0.827 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.801 -25.111 0.073 28.186 hybrid contribution 0.376 1.099 -0.002 1.161 sum -12.425 -24.012 0.071 27.037 Atomic orbital electron populations 1.20453 0.87077 1.03896 1.03427 1.21155 0.94809 0.87176 1.01877 1.21126 0.91020 0.99599 1.15768 1.21750 0.95491 0.91448 1.00426 1.20651 0.91041 0.77018 1.03801 1.86469 1.40223 1.15904 1.84627 1.24438 0.83522 0.89650 0.71697 1.90655 1.21138 1.82367 1.45185 1.21700 1.03062 0.84591 1.05376 1.21590 0.93162 0.97019 1.02033 1.19129 0.97117 0.87934 0.97451 1.21243 0.92953 0.91164 1.50385 0.92529 1.25016 0.96071 0.98062 0.95346 1.69956 1.23362 1.09270 1.51020 0.86582 0.83678 0.79583 0.78111 1.20669 1.21258 1.19843 1.77267 0.96670 1.11282 1.26176 1.48387 1.03471 1.06069 1.57775 1.21836 1.00966 0.77814 1.03363 0.90098 0.89329 0.91256 0.82677 0.89279 0.89272 0.87974 0.87971 0.92391 0.92389 0.96335 0.96326 0.93018 0.90731 0.89484 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 10.12 36.01 0.36 -0.12 16 2 C 0.08 0.74 6.93 -82.27 -0.57 0.17 16 3 C -0.25 -2.92 10.06 -40.01 -0.40 -3.33 16 4 C 0.07 0.99 7.19 -82.40 -0.59 0.40 16 5 C 0.15 2.03 6.09 36.01 0.22 2.25 16 6 O -0.36 -5.19 9.56 -39.24 -0.37 -5.56 16 7 C 0.46 7.68 7.96 36.01 0.29 7.97 16 8 O -0.51 -9.79 15.73 -18.75 -0.29 -10.09 16 9 C -0.11 -1.81 5.81 -27.88 -0.16 -1.98 16 10 C -0.10 -2.11 4.44 -26.73 -0.12 -2.23 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 N -0.29 -3.86 12.58 33.67 0.42 -3.44 16 21 N -0.37 -3.85 4.01 -63.88 -0.26 -4.10 16 22 C 0.10 0.55 11.27 59.85 0.67 1.23 16 23 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.25 7.08 -51.93 -0.37 -0.12 16 26 H 0.16 1.72 7.90 -52.49 -0.41 1.30 16 27 H 0.09 1.17 8.13 -51.93 -0.42 0.75 16 28 H 0.09 1.17 8.13 -51.93 -0.42 0.75 16 29 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.32 8.14 -51.92 -0.42 -0.11 16 37 H 0.09 0.25 7.05 -51.93 -0.37 -0.12 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -34.48 331.12 -6.41 -40.89 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -5.76 Total: -4.52 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.85 Total: -8.91 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.90 Total: -33.70 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.67 Total: -15.65 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.48 -6.41 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848865337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.285 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds