Wall clock time and date at job start Mon Mar 30 2020 04:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35311 * 126.12641 * 2 1 4 4 C 1.39869 * 107.91956 * 180.14993 * 3 2 1 5 5 C 1.50706 * 125.90188 * 179.86436 * 4 3 2 6 6 O 1.45200 * 109.46954 * 359.71411 * 5 4 3 7 7 C 1.34222 * 117.00098 * 179.97438 * 6 5 4 8 8 O 1.20822 * 120.00130 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99989 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.47031 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47459 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99475 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99920 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00452 * 0.02562 * 14 12 11 16 16 Si 1.86809 * 119.99519 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47230 * 90.00311 * 16 14 12 18 18 H 1.48500 * 109.46939 * 210.00296 * 16 14 12 19 19 H 1.48499 * 109.47072 * 330.00097 * 16 14 12 20 20 N 1.30836 * 108.20146 * 359.60152 * 4 3 2 21 21 N 1.34942 * 126.12640 * 179.71386 * 2 1 3 22 22 C 1.46502 * 126.03959 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.46997 * 270.29156 * 1 2 3 24 24 H 1.09005 * 109.46876 * 30.29069 * 1 2 3 25 25 H 1.08995 * 109.47114 * 150.28941 * 1 2 3 26 26 H 1.08000 * 126.04641 * 0.02721 * 3 2 1 27 27 H 1.09000 * 109.47318 * 119.70829 * 5 4 3 28 28 H 1.09000 * 109.47161 * 239.71460 * 5 4 3 29 29 H 1.09003 * 109.47158 * 299.99912 * 9 7 6 30 30 H 1.09003 * 109.47345 * 60.00083 * 9 7 6 31 31 H 1.09003 * 109.46727 * 299.99747 * 10 9 7 32 32 H 1.08998 * 109.47391 * 60.00135 * 10 9 7 33 33 H 1.09003 * 109.47242 * 300.00337 * 11 10 9 34 34 H 1.09003 * 109.47442 * 59.99524 * 11 10 9 35 35 H 0.96996 * 120.00086 * 179.97438 * 15 14 12 36 36 H 1.09010 * 109.47120 * 270.02907 * 22 21 2 37 37 H 1.08999 * 109.46909 * 30.02230 * 22 21 2 38 38 H 1.08997 * 109.47660 * 150.02688 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0035 5 6 4.8544 1.5394 -0.0076 6 8 4.4439 2.9322 -0.0142 7 6 5.4187 3.8548 -0.0180 8 8 6.5767 3.5101 -0.0163 9 6 5.0689 5.3206 -0.0255 10 6 6.3536 6.1516 -0.0293 11 6 5.9985 7.6398 -0.0363 12 6 7.2638 8.4582 -0.0393 13 1 8.2251 7.9661 -0.0361 14 6 7.1941 9.8352 -0.0462 15 7 6.0235 10.4344 -0.0496 16 14 8.7627 10.8497 -0.0506 17 1 9.1789 11.1116 -1.4518 18 1 8.5196 12.1400 0.6430 19 1 9.8366 10.1039 0.6535 20 7 3.6334 -0.6524 0.0031 21 7 2.3026 -1.0899 0.0054 22 6 1.8539 -2.4845 0.0129 23 1 -0.3633 0.0052 1.0277 24 1 -0.3633 0.8874 -0.5184 25 1 -0.3633 -0.8925 -0.5093 26 1 1.9742 2.1211 0.0004 27 1 5.4499 1.3405 0.8834 28 1 5.4500 1.3320 -0.8966 29 1 4.4854 5.5504 -0.9172 30 1 4.4840 5.5592 0.8628 31 1 6.9374 5.9219 0.8622 32 1 6.9381 5.9130 -0.9178 33 1 5.4144 7.8697 -0.9274 34 1 5.4141 7.8781 0.8525 35 1 5.9745 11.4031 -0.0540 36 1 1.7425 -2.8249 1.0425 37 1 0.8955 -2.5606 -0.5005 38 1 2.5899 -3.1058 -0.4975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848865337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:24 Heat of formation + Delta-G solvation = -49.427802 kcal Electronic energy + Delta-G solvation = -18933.319479 eV Core-core repulsion = 15776.358017 eV Total energy + Delta-G solvation = -3156.961462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.37108 -41.47956 -37.88113 -36.14931 -34.83240 -34.07100 -32.91151 -30.61106 -29.39551 -27.96205 -26.53608 -25.67864 -22.87285 -21.55404 -21.23972 -20.46599 -18.67862 -18.41280 -17.85304 -17.72413 -16.87051 -16.69001 -16.42610 -15.84263 -15.09399 -14.83494 -14.61768 -14.50012 -14.09698 -13.94603 -13.80991 -13.37405 -13.30459 -13.22569 -13.07684 -12.79004 -12.63772 -12.50728 -12.42033 -11.96290 -11.70840 -11.64204 -11.54824 -11.36900 -11.14619 -10.52095 -10.12715 -9.50831 -8.18258 -6.27867 0.76310 1.18035 1.21645 1.41921 1.42605 1.54046 1.63672 1.83002 2.43492 3.15179 3.35205 3.67100 3.80865 3.98219 4.12364 4.14289 4.20516 4.24149 4.35112 4.40173 4.60716 4.64712 4.74386 4.78134 4.84435 4.94082 5.07358 5.10186 5.18388 5.21281 5.34407 5.50860 5.55982 5.76387 5.88852 6.10587 6.28735 6.57842 6.73051 6.87848 7.40651 8.93286 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.052886 B = 0.002615 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.311577 B =10704.067151 C =11191.721966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.088 3.912 3 C -0.277 4.277 4 C 0.055 3.945 5 C 0.152 3.848 6 O -0.346 6.346 7 C 0.474 3.526 8 O -0.538 6.538 9 C -0.102 4.102 10 C -0.088 4.088 11 C 0.025 3.975 12 C -0.546 4.546 13 H 0.053 0.947 14 C 0.003 3.997 15 N -0.929 5.929 16 Si 0.961 3.039 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.268 1.268 20 N -0.324 5.324 21 N -0.373 5.373 22 C 0.089 3.911 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.157 0.843 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.005 0.995 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -24.974 0.033 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.306 4.306 4 C -0.109 4.109 5 C 0.077 3.923 6 O -0.262 6.262 7 C 0.318 3.682 8 O -0.427 6.427 9 C -0.139 4.139 10 C -0.125 4.125 11 C -0.012 4.012 12 C -0.584 4.584 13 H 0.072 0.928 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.786 3.214 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.193 1.193 20 N -0.150 5.150 21 N -0.156 5.156 22 C -0.050 4.050 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.174 0.826 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.089 -26.166 0.042 29.718 hybrid contribution 0.669 1.308 0.011 1.470 sum -13.420 -24.858 0.052 28.249 Atomic orbital electron populations 1.20629 0.83698 1.05504 1.04779 1.21779 0.96680 0.86288 0.99264 1.21317 0.90881 1.00593 1.17808 1.21724 0.95853 0.91693 1.01638 1.20680 0.91670 0.76203 1.03774 1.86440 1.39265 1.16443 1.84028 1.24263 0.83152 0.89875 0.70864 1.90651 1.22390 1.82842 1.46817 1.21522 1.00958 0.84029 1.07388 1.21293 0.95160 0.94954 1.01125 1.19017 0.95692 0.90549 0.95961 1.21680 0.93949 0.92155 1.50645 0.92838 1.25893 0.99536 0.99316 0.94787 1.70061 1.25463 1.09785 1.51592 0.85508 0.79513 0.77908 0.78489 1.19789 1.20463 1.19253 1.77169 0.99027 1.11276 1.27496 1.48799 1.02532 1.07856 1.56426 1.22261 1.02423 0.75440 1.04869 0.88664 0.88590 0.88816 0.82561 0.89369 0.89343 0.85976 0.85983 0.93321 0.93287 0.97711 0.97712 0.92681 0.89297 0.86230 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.12 71.24 0.72 0.07 16 2 C 0.09 1.55 6.93 41.41 0.29 1.84 16 3 C -0.28 -6.42 10.06 21.99 0.22 -6.20 16 4 C 0.05 1.47 7.19 43.10 0.31 1.78 16 5 C 0.15 4.17 6.09 71.24 0.43 4.60 16 6 O -0.35 -9.99 9.56 -51.34 -0.49 -10.48 16 7 C 0.47 15.54 7.96 71.24 0.57 16.10 16 8 O -0.54 -20.92 15.73 21.98 0.35 -20.57 16 9 C -0.10 -3.28 5.81 29.85 0.17 -3.11 16 10 C -0.09 -3.71 4.44 30.60 0.14 -3.57 16 11 C 0.02 1.29 4.97 29.85 0.15 1.44 16 12 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 13 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -56.01 13.29 21.44 0.28 -55.73 16 16 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 N -0.32 -8.59 12.58 -47.38 -0.60 -9.19 16 21 N -0.37 -7.08 4.01 -356.02 -1.43 -8.51 16 22 C 0.09 0.75 11.27 127.77 1.44 2.19 16 23 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.09 0.26 7.08 -2.39 -0.02 0.24 16 26 H 0.16 3.39 7.90 -2.91 -0.02 3.37 16 27 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 28 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 29 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 31 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 32 H 0.05 2.13 8.10 -2.39 -0.02 2.12 16 33 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.12 0.21 7.05 -2.39 -0.02 0.20 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -74.80 331.12 6.31 -68.49 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.04 Total: 4.70 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.13 Total: -15.63 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.74 Total: -73.43 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.14 Total: -31.05 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -74.80 6.31 -68.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848865337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.060 kcal (2) G-P(sol) polarization free energy of solvation -74.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds